| Back to Build/check report for BioC 3.17 experimental data | 
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This page was generated on 2023-10-12 14:51:35 -0400 (Thu, 12 Oct 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs | 
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 22.04.2 LTS) | x86_64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4626 | 
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 59/421 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
| ChIPXpressData 1.38.0  (landing page) George Wu 
 | nebbiolo1 | Linux (Ubuntu 22.04.2 LTS) / x86_64 | OK | OK | WARNINGS |  | |||||||
| To the developers/maintainers of the ChIPXpressData package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. | 
| Package: ChIPXpressData | 
| Version: 1.38.0 | 
| Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:ChIPXpressData.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/site-library --timings ChIPXpressData_1.38.0.tar.gz | 
| StartedAt: 2023-10-12 11:06:15 -0400 (Thu, 12 Oct 2023) | 
| EndedAt: 2023-10-12 11:09:32 -0400 (Thu, 12 Oct 2023) | 
| EllapsedTime: 197.0 seconds | 
| RetCode: 0 | 
| Status: WARNINGS | 
| CheckDir: ChIPXpressData.Rcheck | 
| Warnings: 1 | 
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### Running command:
###
###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:ChIPXpressData.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/site-library --timings ChIPXpressData_1.38.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.17-data-experiment/meat/ChIPXpressData.Rcheck’
* using R version 4.3.1 (2023-06-16)
* using platform: x86_64-pc-linux-gnu (64-bit)
* R was compiled by
    gcc (Ubuntu 11.3.0-1ubuntu1~22.04.1) 11.3.0
    GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04.1) 11.3.0
* running under: Ubuntu 22.04.3 LTS
* using session charset: UTF-8
* checking for file ‘ChIPXpressData/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘ChIPXpressData’ version ‘1.38.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
  .BBSoptions
These were most likely included in error. See section ‘Package
structure’ in the ‘Writing R Extensions’ manual.
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘ChIPXpressData’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 3743.5Mb
  sub-directories of 1Mb or more:
    extdata  3742.5Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... WARNING
  
  Note: significantly better compression could be obtained
        by using R CMD build --resave-data
                  old_size new_size compress
  GPL1261mean.rda    215Kb    180Kb       xz
  GPL1261var.rda     216Kb    189Kb       xz
  GPL570mean.rda     198Kb    159Kb       xz
  GPL570var.rda      209Kb    181Kb       xz
* checking examples ... OK
* checking PDF version of manual ... OK
* DONE
Status: 1 WARNING, 2 NOTEs
See
  ‘/home/biocbuild/bbs-3.17-data-experiment/meat/ChIPXpressData.Rcheck/00check.log’
for details.
ChIPXpressData.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL ChIPXpressData ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/site-library’ * installing *source* package ‘ChIPXpressData’ ... ** using staged installation ** data ** inst ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ChIPXpressData)
ChIPXpressData.Rcheck/ChIPXpressData-Ex.timings
| name | user | system | elapsed | |
| DB_GPL1261.bigmemory | 0.060 | 0.127 | 0.191 | |
| DB_GPL570.bigmemory | 0.228 | 0.250 | 0.479 | |
| GPL1261mean | 0.023 | 0.000 | 0.023 | |
| GPL1261var | 0.01 | 0.00 | 0.01 | |
| GPL570mean | 0.012 | 0.001 | 0.012 | |
| GPL570var | 0.009 | 0.000 | 0.010 | |