| Back to Build/check report for BioC 3.17 annotations |
|
This page was generated on 2023-10-11 08:30:04 -0400 (Wed, 11 Oct 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 22.04.2 LTS) | x86_64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4626 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 31/37 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
| rat2302frmavecs 0.99.11 (landing page) Sylvain Gubian
| nebbiolo1 | Linux (Ubuntu 22.04.2 LTS) / x86_64 | OK | OK | OK | ||||||||
|
To the developers/maintainers of the rat2302frmavecs package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: rat2302frmavecs |
| Version: 0.99.11 |
| Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:rat2302frmavecs.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/site-library --timings rat2302frmavecs_0.99.11.tar.gz |
| StartedAt: 2023-10-11 05:33:38 -0400 (Wed, 11 Oct 2023) |
| EndedAt: 2023-10-11 05:36:42 -0400 (Wed, 11 Oct 2023) |
| EllapsedTime: 183.4 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: rat2302frmavecs.Rcheck |
| Warnings: 0 |
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### Running command:
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### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:rat2302frmavecs.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/site-library --timings rat2302frmavecs_0.99.11.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.17-data-annotation/meat/rat2302frmavecs.Rcheck’
* using R version 4.3.1 (2023-06-16)
* using platform: x86_64-pc-linux-gnu (64-bit)
* R was compiled by
gcc (Ubuntu 11.3.0-1ubuntu1~22.04.1) 11.3.0
GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04.1) 11.3.0
* running under: Ubuntu 22.04.3 LTS
* using session charset: UTF-8
* checking for file ‘rat2302frmavecs/DESCRIPTION’ ... OK
* this is package ‘rat2302frmavecs’ version ‘0.99.11’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘rat2302frmavecs’ can be installed ... OK
* checking installed package size ... NOTE
installed size is 14.0Mb
sub-directories of 1Mb or more:
data 10.0Mb
extdata 3.9Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... NOTE
File
LICENSE
is not mentioned in the DESCRIPTION file.
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
‘rat2302frmavecs-vignette.Rmd’ using ‘UTF-8’... OK
NONE
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
‘/home/biocbuild/bbs-3.17-data-annotation/meat/rat2302frmavecs.Rcheck/00check.log’
for details.
rat2302frmavecs.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL rat2302frmavecs ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/site-library’ * installing *source* package ‘rat2302frmavecs’ ... ** using staged installation ** data ** inst ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rat2302frmavecs)
rat2302frmavecs.Rcheck/rat2302frmavecs-Ex.timings
| name | user | system | elapsed | |
| rat2302frmavecs | 2.519 | 0.096 | 2.615 | |