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This page was generated on 2023-01-02 09:00:54 -0500 (Mon, 02 Jan 2023).

HostnameOSArch (*)R versionInstalled pkgs
palomino5Windows Server 2022 Datacenterx64R Under development (unstable) (2022-12-25 r83502 ucrt) -- "Unsuffered Consequences" 4165
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BUILD BIN results for trackViewer on palomino5


To the developers/maintainers of the trackViewer package:
Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 2050/2158HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
trackViewer 1.35.2  (landing page)
Jianhong Ou
Snapshot Date: 2022-12-28 11:00:06 -0500 (Wed, 28 Dec 2022)
git_url: https://git.bioconductor.org/packages/trackViewer
git_branch: master
git_last_commit: 8720113
git_last_commit_date: 2022-12-21 12:39:13 -0500 (Wed, 21 Dec 2022)
palomino5Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  

Summary

Package: trackViewer
Version: 1.35.2
Command: rm -rf trackViewer.buildbin-libdir && mkdir trackViewer.buildbin-libdir && F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL --build --library=trackViewer.buildbin-libdir trackViewer_1.35.2.tar.gz
StartedAt: 2022-12-29 05:52:00 -0500 (Thu, 29 Dec 2022)
EndedAt: 2022-12-29 05:53:22 -0500 (Thu, 29 Dec 2022)
EllapsedTime: 81.8 seconds
RetCode: 0
Status:   OK  
PackageFile: trackViewer_1.35.2.zip
PackageFileSize: 6.318 MiB

Command output

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### Running command:
###
###   rm -rf trackViewer.buildbin-libdir && mkdir trackViewer.buildbin-libdir && F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL --build --library=trackViewer.buildbin-libdir trackViewer_1.35.2.tar.gz
###
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* installing *source* package 'trackViewer' ...
** using staged installation
** libs
using C++ compiler: 'G__~1.EXE (GCC) 12.2.0'
g++ -std=gnu++11  -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include'   -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++11  -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include'   -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c hic.cpp -o hic.o
hic.cpp: In member function 'void HicFileHead::readHeader(std::ifstream&)':
hic.cpp:247:16: warning: unused variable 'nviPosition' [-Wunused-variable]
  247 |           long nviPosition = readLong(ifile);
      |                ^~~~~~~~~~~
hic.cpp:248:16: warning: unused variable 'nviLength' [-Wunused-variable]
  248 |           long nviLength = readLong(ifile);
      |                ^~~~~~~~~
In member function 'int body::getResolution(int)',
    inlined from 'std::vector<cellData> getByCoor(std::string, int, int, std::string, int, int, int, std::string, std::string, HicFileHead&, HicFileFoot&, std::ifstream&)' at hic.cpp:799:33:
hic.cpp:751:19: warning: 'bd.body::data.resolutions::nResolutions' may be used uninitialized [-Wmaybe-uninitialized]
  751 |     for(int i=0; i<data.nResolutions; i++){
      |                  ~^~~~~~~~~~~~~~~~~~
hic.cpp: In function 'std::vector<cellData> getByCoor(std::string, int, int, std::string, int, int, int, std::string, std::string, HicFileHead&, HicFileFoot&, std::ifstream&)':
hic.cpp:797:10: note: 'bd.body::data.resolutions::nResolutions' was declared here
  797 |     body bd;
      |          ^~
hic.cpp:803:39: warning: 'bd.body::data.resolutions::res' may be used uninitialized [-Wmaybe-uninitialized]
  803 |     resolution res = bd.data.res[resId];
      |                                       ^
hic.cpp:797:10: note: 'bd.body::data.resolutions::res' was declared here
  797 |     body bd;
      |          ^~
g++ -std=gnu++11 -shared -s -static-libgcc -o trackViewer.dll tmp.def RcppExports.o hic.o -lz -Lc:/rtools42/x86_64-w64-mingw32.static.posix/lib/x64 -Lc:/rtools42/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.17-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.17-bioc-rtools43/meat/trackViewer.buildbin-libdir/00LOCK-trackViewer/00new/trackViewer/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'trackViewer' as trackViewer_1.35.2.zip
* DONE (trackViewer)