Back to Build/check report for BioC 3.17 |
|
This page was generated on 2023-01-02 09:00:50 -0500 (Mon, 02 Jan 2023).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
palomino5 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2022-12-25 r83502 ucrt) -- "Unsuffered Consequences" | 4165 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the seqArchRplus package: Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1820/2158 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
seqArchRplus 0.99.8 (landing page) Sarvesh Nikumbh
| palomino5 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | ||||||||
Package: seqArchRplus |
Version: 0.99.8 |
Command: F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:seqArchRplus.install-out.txt --library=F:\biocbuild\bbs-3.17-bioc\R\library --no-vignettes --timings seqArchRplus_0.99.8.tar.gz |
StartedAt: 2022-12-29 03:29:07 -0500 (Thu, 29 Dec 2022) |
EndedAt: 2022-12-29 03:33:08 -0500 (Thu, 29 Dec 2022) |
EllapsedTime: 241.3 seconds |
RetCode: 0 |
Status: OK |
CheckDir: seqArchRplus.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:seqArchRplus.install-out.txt --library=F:\biocbuild\bbs-3.17-bioc\R\library --no-vignettes --timings seqArchRplus_0.99.8.tar.gz ### ############################################################################## ############################################################################## * using log directory 'F:/biocbuild/bbs-3.17-bioc-rtools43/meat/seqArchRplus.Rcheck' * using R Under development (unstable) (2022-12-25 r83502 ucrt) * using platform: x86_64-w64-mingw32 (64-bit) * R was compiled by gcc.exe (GCC) 10.4.0 GNU Fortran (GCC) 10.4.0 * running under: Windows Server x64 (build 20348) * using session charset: UTF-8 * using option '--no-vignettes' * checking for file 'seqArchRplus/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'seqArchRplus' version '0.99.8' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'seqArchRplus' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in 'vignettes' ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed per_cluster_go_term_enrichments 30.30 2.12 32.95 generate_all_plots 30.89 1.51 33.14 per_cluster_annotations 8.30 0.16 8.45 curate_clusters 6.64 0.38 7.89 plot_motif_heatmaps2 3.99 1.06 6.29 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
seqArchRplus.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL seqArchRplus ### ############################################################################## ############################################################################## * installing to library 'F:/biocbuild/bbs-3.17-bioc/R/library' * installing *source* package 'seqArchRplus' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (seqArchRplus)
seqArchRplus.Rcheck/seqArchRplus-Ex.timings
name | user | system | elapsed | |
curate_clusters | 6.64 | 0.38 | 7.89 | |
generate_all_plots | 30.89 | 1.51 | 33.14 | |
handle_tc_from_cage | 0.62 | 0.11 | 0.97 | |
iqw_tpm_plots | 0.41 | 0.00 | 0.40 | |
order_clusters_iqw | 0.01 | 0.00 | 0.02 | |
per_cluster_annotations | 8.30 | 0.16 | 8.45 | |
per_cluster_go_term_enrichments | 30.30 | 2.12 | 32.95 | |
per_cluster_seqlogos | 1.50 | 0.05 | 1.55 | |
per_cluster_strand_dist | 0.88 | 0.00 | 0.87 | |
plot_motif_heatmaps | 0.93 | 0.13 | 1.10 | |
plot_motif_heatmaps2 | 3.99 | 1.06 | 6.29 | |
seqs_acgt_image | 1.37 | 0.03 | 1.41 | |
write_seqArchR_cluster_track_bed | 0.03 | 0.02 | 0.05 | |