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This page was generated on 2023-01-02 09:00:50 -0500 (Mon, 02 Jan 2023).

HostnameOSArch (*)R versionInstalled pkgs
palomino5Windows Server 2022 Datacenterx64R Under development (unstable) (2022-12-25 r83502 ucrt) -- "Unsuffered Consequences" 4165
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

CHECK results for seqArchRplus on palomino5


To the developers/maintainers of the seqArchRplus package:
Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1820/2158HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
seqArchRplus 0.99.8  (landing page)
Sarvesh Nikumbh
Snapshot Date: 2022-12-28 11:00:06 -0500 (Wed, 28 Dec 2022)
git_url: https://git.bioconductor.org/packages/seqArchRplus
git_branch: master
git_last_commit: 06af1a1
git_last_commit_date: 2022-12-06 09:32:56 -0500 (Tue, 06 Dec 2022)
palomino5Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  

Summary

Package: seqArchRplus
Version: 0.99.8
Command: F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:seqArchRplus.install-out.txt --library=F:\biocbuild\bbs-3.17-bioc\R\library --no-vignettes --timings seqArchRplus_0.99.8.tar.gz
StartedAt: 2022-12-29 03:29:07 -0500 (Thu, 29 Dec 2022)
EndedAt: 2022-12-29 03:33:08 -0500 (Thu, 29 Dec 2022)
EllapsedTime: 241.3 seconds
RetCode: 0
Status:   OK  
CheckDir: seqArchRplus.Rcheck
Warnings: 0

Command output

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### Running command:
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###   F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:seqArchRplus.install-out.txt --library=F:\biocbuild\bbs-3.17-bioc\R\library --no-vignettes --timings seqArchRplus_0.99.8.tar.gz
###
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* using log directory 'F:/biocbuild/bbs-3.17-bioc-rtools43/meat/seqArchRplus.Rcheck'
* using R Under development (unstable) (2022-12-25 r83502 ucrt)
* using platform: x86_64-w64-mingw32 (64-bit)
* R was compiled by
    gcc.exe (GCC) 10.4.0
    GNU Fortran (GCC) 10.4.0
* running under: Windows Server x64 (build 20348)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'seqArchRplus/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'seqArchRplus' version '0.99.8'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'seqArchRplus' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                                 user system elapsed
per_cluster_go_term_enrichments 30.30   2.12   32.95
generate_all_plots              30.89   1.51   33.14
per_cluster_annotations          8.30   0.16    8.45
curate_clusters                  6.64   0.38    7.89
plot_motif_heatmaps2             3.99   1.06    6.29
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

seqArchRplus.Rcheck/00install.out

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### Running command:
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###   F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL seqArchRplus
###
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* installing to library 'F:/biocbuild/bbs-3.17-bioc/R/library'
* installing *source* package 'seqArchRplus' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (seqArchRplus)

Tests output


Example timings

seqArchRplus.Rcheck/seqArchRplus-Ex.timings

nameusersystemelapsed
curate_clusters6.640.387.89
generate_all_plots30.89 1.5133.14
handle_tc_from_cage0.620.110.97
iqw_tpm_plots0.410.000.40
order_clusters_iqw0.010.000.02
per_cluster_annotations8.300.168.45
per_cluster_go_term_enrichments30.30 2.1232.95
per_cluster_seqlogos1.500.051.55
per_cluster_strand_dist0.880.000.87
plot_motif_heatmaps0.930.131.10
plot_motif_heatmaps23.991.066.29
seqs_acgt_image1.370.031.41
write_seqArchR_cluster_track_bed0.030.020.05