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This page was generated on 2023-01-02 09:00:52 -0500 (Mon, 02 Jan 2023).

HostnameOSArch (*)R versionInstalled pkgs
palomino5Windows Server 2022 Datacenterx64R Under development (unstable) (2022-12-25 r83502 ucrt) -- "Unsuffered Consequences" 4165
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD BIN results for sSNAPPY on palomino5


To the developers/maintainers of the sSNAPPY package:
Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1946/2158HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
sSNAPPY 1.3.2  (landing page)
Wenjun Liu
Snapshot Date: 2022-12-28 11:00:06 -0500 (Wed, 28 Dec 2022)
git_url: https://git.bioconductor.org/packages/sSNAPPY
git_branch: master
git_last_commit: 401ea3f
git_last_commit_date: 2022-12-12 00:03:36 -0500 (Mon, 12 Dec 2022)
palomino5Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  

Summary

Package: sSNAPPY
Version: 1.3.2
Command: rm -rf sSNAPPY.buildbin-libdir && mkdir sSNAPPY.buildbin-libdir && F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL --build --library=sSNAPPY.buildbin-libdir sSNAPPY_1.3.2.tar.gz
StartedAt: 2022-12-29 05:48:52 -0500 (Thu, 29 Dec 2022)
EndedAt: 2022-12-29 05:49:50 -0500 (Thu, 29 Dec 2022)
EllapsedTime: 58.5 seconds
RetCode: 0
Status:   OK  
PackageFile: sSNAPPY_1.3.2.zip
PackageFileSize: 2.763 MiB

Command output

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###
### Running command:
###
###   rm -rf sSNAPPY.buildbin-libdir && mkdir sSNAPPY.buildbin-libdir && F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL --build --library=sSNAPPY.buildbin-libdir sSNAPPY_1.3.2.tar.gz
###
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* installing *source* package 'sSNAPPY' ...
** using staged installation
** libs
using C++ compiler: 'G__~1.EXE (GCC) 12.2.0'
using C++11
g++  -std=gnu++11 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/RcppArmadillo/include'   -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include"  -fopenmp   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c GenePertScore.cpp -o GenePertScore.o
In file included from F:/biocbuild/bbs-3.17-bioc/R/library/RcppArmadillo/include/armadillo:22,
                 from F:/biocbuild/bbs-3.17-bioc/R/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:56,
                 from F:/biocbuild/bbs-3.17-bioc/R/library/RcppArmadillo/include/RcppArmadillo.h:29,
                 from GenePertScore.cpp:2:
F:/biocbuild/bbs-3.17-bioc/R/library/RcppArmadillo/include/armadillo_bits/config.hpp:338:86: note: '#pragma message: INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed'
  338 |   #pragma message ("INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed")
      |                                                                                      ^
F:/biocbuild/bbs-3.17-bioc/R/library/RcppArmadillo/include/armadillo_bits/config.hpp:343:75: note: '#pragma message: INFO: suggest to use ARMA_WARN_LEVEL option instead'
  343 |     #pragma message ("INFO: suggest to use ARMA_WARN_LEVEL option instead")
      |                                                                           ^
F:/biocbuild/bbs-3.17-bioc/R/library/RcppArmadillo/include/armadillo_bits/config.hpp:346:61: note: '#pragma message: INFO: see the documentation for details'
  346 |   #pragma message ("INFO: see the documentation for details")
      |                                                             ^
g++  -std=gnu++11 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/RcppArmadillo/include'   -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include"  -fopenmp   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c RcppExports.cpp -o RcppExports.o
g++  -std=gnu++11 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/RcppArmadillo/include'   -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include"  -fopenmp   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c code.cpp -o code.o
g++  -std=gnu++11 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/RcppArmadillo/include'   -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include"  -fopenmp   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c normaliseByPermutation.cpp -o normaliseByPermutation.o
In file included from F:/biocbuild/bbs-3.17-bioc/R/library/RcppArmadillo/include/armadillo:22,
                 from F:/biocbuild/bbs-3.17-bioc/R/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:56,
                 from F:/biocbuild/bbs-3.17-bioc/R/library/RcppArmadillo/include/RcppArmadillo.h:29,
                 from normaliseByPermutation.cpp:2:
F:/biocbuild/bbs-3.17-bioc/R/library/RcppArmadillo/include/armadillo_bits/config.hpp:338:86: note: '#pragma message: INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed'
  338 |   #pragma message ("INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed")
      |                                                                                      ^
F:/biocbuild/bbs-3.17-bioc/R/library/RcppArmadillo/include/armadillo_bits/config.hpp:343:75: note: '#pragma message: INFO: suggest to use ARMA_WARN_LEVEL option instead'
  343 |     #pragma message ("INFO: suggest to use ARMA_WARN_LEVEL option instead")
      |                                                                           ^
F:/biocbuild/bbs-3.17-bioc/R/library/RcppArmadillo/include/armadillo_bits/config.hpp:346:61: note: '#pragma message: INFO: see the documentation for details'
  346 |   #pragma message ("INFO: see the documentation for details")
      |                                                             ^
g++ -shared -s -static-libgcc -o sSNAPPY.dll tmp.def GenePertScore.o RcppExports.o code.o normaliseByPermutation.o -fopenmp -LF:/biocbuild/bbs-3.17-bioc/R/bin/x64 -lRlapack -LF:/biocbuild/bbs-3.17-bioc/R/bin/x64 -lRblas -lgfortran -lm -lquadmath -Lc:/rtools42/x86_64-w64-mingw32.static.posix/lib/x64 -Lc:/rtools42/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.17-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.17-bioc-rtools43/meat/sSNAPPY.buildbin-libdir/00LOCK-sSNAPPY/00new/sSNAPPY/libs/x64
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'sSNAPPY' as sSNAPPY_1.3.2.zip
* DONE (sSNAPPY)