Back to Build/check report for BioC 3.17 |
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This page was generated on 2023-01-02 09:00:52 -0500 (Mon, 02 Jan 2023).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
palomino5 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2022-12-25 r83502 ucrt) -- "Unsuffered Consequences" | 4165 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the sSNAPPY package: Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1946/2158 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
sSNAPPY 1.3.2 (landing page) Wenjun Liu
| palomino5 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | ||||||||
Package: sSNAPPY |
Version: 1.3.2 |
Command: rm -rf sSNAPPY.buildbin-libdir && mkdir sSNAPPY.buildbin-libdir && F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL --build --library=sSNAPPY.buildbin-libdir sSNAPPY_1.3.2.tar.gz |
StartedAt: 2022-12-29 05:48:52 -0500 (Thu, 29 Dec 2022) |
EndedAt: 2022-12-29 05:49:50 -0500 (Thu, 29 Dec 2022) |
EllapsedTime: 58.5 seconds |
RetCode: 0 |
Status: OK |
PackageFile: sSNAPPY_1.3.2.zip |
PackageFileSize: 2.763 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf sSNAPPY.buildbin-libdir && mkdir sSNAPPY.buildbin-libdir && F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL --build --library=sSNAPPY.buildbin-libdir sSNAPPY_1.3.2.tar.gz ### ############################################################################## ############################################################################## * installing *source* package 'sSNAPPY' ... ** using staged installation ** libs using C++ compiler: 'G__~1.EXE (GCC) 12.2.0' using C++11 g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/RcppArmadillo/include' -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c GenePertScore.cpp -o GenePertScore.o In file included from F:/biocbuild/bbs-3.17-bioc/R/library/RcppArmadillo/include/armadillo:22, from F:/biocbuild/bbs-3.17-bioc/R/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:56, from F:/biocbuild/bbs-3.17-bioc/R/library/RcppArmadillo/include/RcppArmadillo.h:29, from GenePertScore.cpp:2: F:/biocbuild/bbs-3.17-bioc/R/library/RcppArmadillo/include/armadillo_bits/config.hpp:338:86: note: '#pragma message: INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed' 338 | #pragma message ("INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed") | ^ F:/biocbuild/bbs-3.17-bioc/R/library/RcppArmadillo/include/armadillo_bits/config.hpp:343:75: note: '#pragma message: INFO: suggest to use ARMA_WARN_LEVEL option instead' 343 | #pragma message ("INFO: suggest to use ARMA_WARN_LEVEL option instead") | ^ F:/biocbuild/bbs-3.17-bioc/R/library/RcppArmadillo/include/armadillo_bits/config.hpp:346:61: note: '#pragma message: INFO: see the documentation for details' 346 | #pragma message ("INFO: see the documentation for details") | ^ g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/RcppArmadillo/include' -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/RcppArmadillo/include' -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c code.cpp -o code.o g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/RcppArmadillo/include' -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c normaliseByPermutation.cpp -o normaliseByPermutation.o In file included from F:/biocbuild/bbs-3.17-bioc/R/library/RcppArmadillo/include/armadillo:22, from F:/biocbuild/bbs-3.17-bioc/R/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:56, from F:/biocbuild/bbs-3.17-bioc/R/library/RcppArmadillo/include/RcppArmadillo.h:29, from normaliseByPermutation.cpp:2: F:/biocbuild/bbs-3.17-bioc/R/library/RcppArmadillo/include/armadillo_bits/config.hpp:338:86: note: '#pragma message: INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed' 338 | #pragma message ("INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed") | ^ F:/biocbuild/bbs-3.17-bioc/R/library/RcppArmadillo/include/armadillo_bits/config.hpp:343:75: note: '#pragma message: INFO: suggest to use ARMA_WARN_LEVEL option instead' 343 | #pragma message ("INFO: suggest to use ARMA_WARN_LEVEL option instead") | ^ F:/biocbuild/bbs-3.17-bioc/R/library/RcppArmadillo/include/armadillo_bits/config.hpp:346:61: note: '#pragma message: INFO: see the documentation for details' 346 | #pragma message ("INFO: see the documentation for details") | ^ g++ -shared -s -static-libgcc -o sSNAPPY.dll tmp.def GenePertScore.o RcppExports.o code.o normaliseByPermutation.o -fopenmp -LF:/biocbuild/bbs-3.17-bioc/R/bin/x64 -lRlapack -LF:/biocbuild/bbs-3.17-bioc/R/bin/x64 -lRblas -lgfortran -lm -lquadmath -Lc:/rtools42/x86_64-w64-mingw32.static.posix/lib/x64 -Lc:/rtools42/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.17-bioc/R/bin/x64 -lR installing to F:/biocbuild/bbs-3.17-bioc-rtools43/meat/sSNAPPY.buildbin-libdir/00LOCK-sSNAPPY/00new/sSNAPPY/libs/x64 ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * MD5 sums packaged installation of 'sSNAPPY' as sSNAPPY_1.3.2.zip * DONE (sSNAPPY)