| Back to Build/check report for BioC 3.17 |
|
This page was generated on 2023-01-02 09:00:48 -0500 (Mon, 02 Jan 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| palomino5 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2022-12-25 r83502 ucrt) -- "Unsuffered Consequences" | 4165 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the rqubic package: Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1710/2158 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| rqubic 1.45.0 (landing page) Jitao David Zhang
| palomino5 | Windows Server 2022 Datacenter / x64 | OK | OK | WARNINGS | OK | ||||||||
| Package: rqubic |
| Version: 1.45.0 |
| Command: rm -rf rqubic.buildbin-libdir && mkdir rqubic.buildbin-libdir && F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL --build --library=rqubic.buildbin-libdir rqubic_1.45.0.tar.gz |
| StartedAt: 2022-12-29 05:40:25 -0500 (Thu, 29 Dec 2022) |
| EndedAt: 2022-12-29 05:40:57 -0500 (Thu, 29 Dec 2022) |
| EllapsedTime: 31.6 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: rqubic_1.45.0.zip |
| PackageFileSize: 436.6 KiB |
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### Running command:
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### rm -rf rqubic.buildbin-libdir && mkdir rqubic.buildbin-libdir && F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL --build --library=rqubic.buildbin-libdir rqubic_1.45.0.tar.gz
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* installing *source* package 'rqubic' ...
** using staged installation
** libs
using C compiler: 'gcc.exe (GCC) 12.2.0'
gcc -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c bicluster.c -o bicluster.o
bicluster.c: In function 'seed_intersect_r':
bicluster.c:354:11: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
354 | if (flag=ss) (*m_cnt)++;
| ^~~~
gcc -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c discretize.c -o discretize.o
In file included from discretize.c:9:
rqubic.h:62:20: warning: 'MINCOL_ATT_NAME' defined but not used [-Wunused-variable]
62 | static const char *MINCOL_ATT_NAME="minimumCol";
| ^~~~~~~~~~~~~~~
rqubic.h:61:20: warning: 'EDGELIST_ATT_NAME' defined but not used [-Wunused-variable]
61 | static const char *EDGELIST_ATT_NAME="edgelist";
| ^~~~~~~~~~~~~~~~~
gcc -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c fib.c -o fib.o
In file included from fib.c:35:
rqubic.h:62:20: warning: 'MINCOL_ATT_NAME' defined but not used [-Wunused-variable]
62 | static const char *MINCOL_ATT_NAME="minimumCol";
| ^~~~~~~~~~~~~~~
rqubic.h:61:20: warning: 'EDGELIST_ATT_NAME' defined but not used [-Wunused-variable]
61 | static const char *EDGELIST_ATT_NAME="edgelist";
| ^~~~~~~~~~~~~~~~~
gcc -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c graph.c -o graph.o
In function 'compare_edges',
inlined from 'fh_insert_fixed' at graph.c:41:9,
inlined from 'generate_sorted_seeds' at graph.c:147:7:
graph.c:31:13: warning: array subscript 'struct Edge[0]' is partly outside array bounds of 'struct Edge[0]' [-Warray-bounds]
31 | const int score_a = ((pEdge)a)->score;
| ^~~~~~~
graph.c: In function 'generate_sorted_seeds':
graph.c:131:9: note: object '_cur_min' of size 8
131 | pEdge _cur_min = &__cur_min;
| ^~~~~~~~
gcc -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c rqubic.c -o rqubic.o
In file included from rqubic.c:5:
rqubic.h:62:20: warning: 'MINCOL_ATT_NAME' defined but not used [-Wunused-variable]
62 | static const char *MINCOL_ATT_NAME="minimumCol";
| ^~~~~~~~~~~~~~~
rqubic.h:61:20: warning: 'EDGELIST_ATT_NAME' defined but not used [-Wunused-variable]
61 | static const char *EDGELIST_ATT_NAME="edgelist";
| ^~~~~~~~~~~~~~~~~
gcc -shared -s -static-libgcc -o rqubic.dll tmp.def bicluster.o discretize.o fib.o graph.o rqubic.o -Lc:/rtools42/x86_64-w64-mingw32.static.posix/lib/x64 -Lc:/rtools42/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.17-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.17-bioc-rtools43/meat/rqubic.buildbin-libdir/00LOCK-rqubic/00new/rqubic/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'rqubic' as rqubic_1.45.0.zip
* DONE (rqubic)