| Back to Build/check report for BioC 3.17 |
|
This page was generated on 2023-01-02 09:00:47 -0500 (Mon, 02 Jan 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| palomino5 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2022-12-25 r83502 ucrt) -- "Unsuffered Consequences" | 4165 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the rhdf5 package: Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1653/2158 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| rhdf5 2.43.0 (landing page) Mike Smith
| palomino5 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | ||||||||
| Package: rhdf5 |
| Version: 2.43.0 |
| Command: F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL rhdf5 |
| StartedAt: 2022-12-28 15:28:43 -0500 (Wed, 28 Dec 2022) |
| EndedAt: 2022-12-28 15:29:25 -0500 (Wed, 28 Dec 2022) |
| EllapsedTime: 41.3 seconds |
| RetCode: 0 |
| Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL rhdf5 ### ############################################################################## ############################################################################## * installing to library 'F:/biocbuild/bbs-3.17-bioc/R/library' * installing *source* package 'rhdf5' ... ** using staged installation ** libs Warning: this package has a non-empty 'configure.win' file, so building only the main architecture using C compiler: 'gcc.exe (GCC) 12.2.0' using C++ compiler: 'G__~1.EXE (GCC) 12.2.0' gcc -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -D__USE_MINGW_ANSI_STDIO -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rhdf5lib/include' -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c H5.c -o H5.o gcc -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -D__USE_MINGW_ANSI_STDIO -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rhdf5lib/include' -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c H5A.c -o H5A.o gcc -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -D__USE_MINGW_ANSI_STDIO -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rhdf5lib/include' -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c H5D.c -o H5D.o gcc -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -D__USE_MINGW_ANSI_STDIO -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rhdf5lib/include' -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c H5E.c -o H5E.o gcc -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -D__USE_MINGW_ANSI_STDIO -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rhdf5lib/include' -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c H5F.c -o H5F.o gcc -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -D__USE_MINGW_ANSI_STDIO -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rhdf5lib/include' -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c H5G.c -o H5G.o gcc -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -D__USE_MINGW_ANSI_STDIO -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rhdf5lib/include' -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c H5I.c -o H5I.o gcc -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -D__USE_MINGW_ANSI_STDIO -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rhdf5lib/include' -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c H5L.c -o H5L.o gcc -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -D__USE_MINGW_ANSI_STDIO -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rhdf5lib/include' -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c H5O.c -o H5O.o gcc -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -D__USE_MINGW_ANSI_STDIO -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rhdf5lib/include' -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c H5P.c -o H5P.o gcc -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -D__USE_MINGW_ANSI_STDIO -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rhdf5lib/include' -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c H5R.c -o H5R.o gcc -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -D__USE_MINGW_ANSI_STDIO -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rhdf5lib/include' -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c H5S.c -o H5S.o gcc -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -D__USE_MINGW_ANSI_STDIO -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rhdf5lib/include' -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c H5S_extras.c -o H5S_extras.o gcc -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -D__USE_MINGW_ANSI_STDIO -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rhdf5lib/include' -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c H5T.c -o H5T.o gcc -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -D__USE_MINGW_ANSI_STDIO -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rhdf5lib/include' -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c H5Z.c -o H5Z.o gcc -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -D__USE_MINGW_ANSI_STDIO -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rhdf5lib/include' -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c H5constants.c -o H5constants.o g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -D__USE_MINGW_ANSI_STDIO -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rhdf5lib/include' -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c HandleList.cpp -o HandleList.o gcc -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -D__USE_MINGW_ANSI_STDIO -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rhdf5lib/include' -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c HandleListWrap.c -o HandleListWrap.o gcc -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -D__USE_MINGW_ANSI_STDIO -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rhdf5lib/include' -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c bit64conversion.c -o bit64conversion.o gcc -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -D__USE_MINGW_ANSI_STDIO -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rhdf5lib/include' -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c external_filters.c -o external_filters.o gcc -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -D__USE_MINGW_ANSI_STDIO -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rhdf5lib/include' -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c h5dump.c -o h5dump.o gcc -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -D__USE_MINGW_ANSI_STDIO -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rhdf5lib/include' -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c h5ls.c -o h5ls.o gcc -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -D__USE_MINGW_ANSI_STDIO -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rhdf5lib/include' -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c h5testLock.c -o h5testLock.o gcc -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -D__USE_MINGW_ANSI_STDIO -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rhdf5lib/include' -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c h5writeDataFrame.c -o h5writeDataFrame.o gcc -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -D__USE_MINGW_ANSI_STDIO -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rhdf5lib/include' -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c printdatatype.c -o printdatatype.o gcc -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -D__USE_MINGW_ANSI_STDIO -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rhdf5lib/include' -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c utils.c -o utils.o gcc -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -D__USE_MINGW_ANSI_STDIO -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rhdf5lib/include' -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c wrap.c -o wrap.o g++ -std=gnu++11 -shared -s -static-libgcc -o rhdf5.dll tmp.def H5.o H5A.o H5D.o H5E.o H5F.o H5G.o H5I.o H5L.o H5O.o H5P.o H5R.o H5S.o H5S_extras.o H5T.o H5Z.o H5constants.o HandleList.o HandleListWrap.o bit64conversion.o external_filters.o h5dump.o h5ls.o h5testLock.o h5writeDataFrame.o printdatatype.o utils.o wrap.o -LF:/biocbuild/bbs-3.17-bioc/R/library/Rhdf5lib/lib/x64-ucrt -lhdf5 -lcurl -lssh2 -lssl -lcrypto -lwldap32 -lws2_32 -lcrypt32 -lsz -laec -lz -lpsapi -Lc:/rtools42/x86_64-w64-mingw32.static.posix/lib/x64 -Lc:/rtools42/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.17-bioc/R/bin/x64 -lR installing to F:/biocbuild/bbs-3.17-bioc/R/library/00LOCK-rhdf5/00new/rhdf5/libs/x64 ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rhdf5)