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This page was generated on 2023-01-02 09:00:44 -0500 (Mon, 02 Jan 2023).

HostnameOSArch (*)R versionInstalled pkgs
palomino5Windows Server 2022 Datacenterx64R Under development (unstable) (2022-12-25 r83502 ucrt) -- "Unsuffered Consequences" 4165
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BUILD results for qckitfastq on palomino5


To the developers/maintainers of the qckitfastq package:
Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1543/2158HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
qckitfastq 1.15.0  (landing page)
August Guang
Snapshot Date: 2022-12-28 11:00:06 -0500 (Wed, 28 Dec 2022)
git_url: https://git.bioconductor.org/packages/qckitfastq
git_branch: master
git_last_commit: 40779d8
git_last_commit_date: 2022-11-01 11:19:24 -0500 (Tue, 01 Nov 2022)
palomino5Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped

Summary

Package: qckitfastq
Version: 1.15.0
Command: chmod a+r qckitfastq -R && F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data qckitfastq
StartedAt: 2022-12-28 19:55:05 -0500 (Wed, 28 Dec 2022)
EndedAt: 2022-12-28 19:55:48 -0500 (Wed, 28 Dec 2022)
EllapsedTime: 43.0 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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###
### Running command:
###
###   chmod a+r qckitfastq -R && F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data qckitfastq
###
##############################################################################
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* checking for file 'qckitfastq/DESCRIPTION' ... OK
* preparing 'qckitfastq':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'vignette-qckitfastq.Rmd' using rmarkdown
!!! Error: Cannot call ghostscript `mgs' (No such file or directory/The system cannot find the file specified)!
pdfcrop: major issue: So far, you have not checked for updates as a MiKTeX user.
!!! Error: Cannot call ghostscript `mgs' (No such file or directory/The system cannot find the file specified)!
pdfcrop: major issue: So far, you have not checked for updates as a MiKTeX user.
!!! Error: Cannot call ghostscript `mgs' (No such file or directory/The system cannot find the file specified)!
pdfcrop: major issue: So far, you have not checked for updates as a MiKTeX user.
!!! Error: Cannot call ghostscript `mgs' (No such file or directory/The system cannot find the file specified)!
pdfcrop: major issue: So far, you have not checked for updates as a MiKTeX user.
!!! Error: Cannot call ghostscript `mgs' (No such file or directory/The system cannot find the file specified)!
pdfcrop: major issue: So far, you have not checked for updates as a MiKTeX user.
!!! Error: Cannot call ghostscript `mgs' (No such file or directory/The system cannot find the file specified)!
pdfcrop: major issue: So far, you have not checked for updates as a MiKTeX user.
!!! Error: Cannot call ghostscript `mgs' (No such file or directory/The system cannot find the file specified)!
pdfcrop: major issue: So far, you have not checked for updates as a MiKTeX user.
! LaTeX Error: File `tabu.sty' not found.

! Emergency stop.
<read *> 

! pdflatex: major issue: So far, you have not checked for updates as a MiKTeX user.

Error: processing vignette 'vignette-qckitfastq.Rmd' failed with diagnostics:
LaTeX failed to compile F:/biocbuild/bbs-3.17-bioc-rtools43/tmpdir/RtmpQRmDdd/Rbuild40ec11351011/qckitfastq/vignettes/vignette-qckitfastq.tex. See https://yihui.org/tinytex/r/#debugging for debugging tips. See vignette-qckitfastq.log for more info.
--- failed re-building 'vignette-qckitfastq.Rmd'

SUMMARY: processing the following file failed:
  'vignette-qckitfastq.Rmd'

Error: Vignette re-building failed.
Execution halted