| Back to Build/check report for BioC 3.17 |
|
This page was generated on 2023-01-02 09:00:44 -0500 (Mon, 02 Jan 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| palomino5 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2022-12-25 r83502 ucrt) -- "Unsuffered Consequences" | 4165 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the proDA package: Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1511/2158 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| proDA 1.13.0 (landing page) Constantin Ahlmann-Eltze
| palomino5 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | ||||||||
| Package: proDA |
| Version: 1.13.0 |
| Command: F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:proDA.install-out.txt --library=F:\biocbuild\bbs-3.17-bioc\R\library --no-vignettes --timings proDA_1.13.0.tar.gz |
| StartedAt: 2022-12-29 02:26:35 -0500 (Thu, 29 Dec 2022) |
| EndedAt: 2022-12-29 02:30:01 -0500 (Thu, 29 Dec 2022) |
| EllapsedTime: 205.6 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: proDA.Rcheck |
| Warnings: 0 |
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###
### Running command:
###
### F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:proDA.install-out.txt --library=F:\biocbuild\bbs-3.17-bioc\R\library --no-vignettes --timings proDA_1.13.0.tar.gz
###
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* using log directory 'F:/biocbuild/bbs-3.17-bioc-rtools43/meat/proDA.Rcheck'
* using R Under development (unstable) (2022-12-25 r83502 ucrt)
* using platform: x86_64-w64-mingw32 (64-bit)
* R was compiled by
gcc.exe (GCC) 10.4.0
GNU Fortran (GCC) 10.4.0
* running under: Windows Server x64 (build 20348)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'proDA/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'proDA' version '1.13.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'proDA' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
Running 'testthat.R'
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
proDA.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL proDA ### ############################################################################## ############################################################################## * installing to library 'F:/biocbuild/bbs-3.17-bioc/R/library' * installing *source* package 'proDA' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (proDA)
proDA.Rcheck/tests/testthat.Rout
R Under development (unstable) (2022-12-25 r83502 ucrt) -- "Unsuffered Consequences"
Copyright (C) 2022 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(proDA)
>
> test_check("proDA")
[ FAIL 0 | WARN 0 | SKIP 1 | PASS 126 ]
══ Skipped tests ═══════════════════════════════════════════════════════════════
• Very slow (1)
[ FAIL 0 | WARN 0 | SKIP 1 | PASS 126 ]
>
> proc.time()
user system elapsed
83.93 1.98 85.92
proDA.Rcheck/proDA-Ex.timings
| name | user | system | elapsed | |
| abundances | 0.73 | 0.04 | 0.78 | |
| as_replicate | 0 | 0 | 0 | |
| cash-proDAFit-method | 0.52 | 0.00 | 0.52 | |
| coefficient_variance_matrices | 0.48 | 0.02 | 0.50 | |
| coefficients | 0.48 | 0.00 | 0.48 | |
| convergence | 0.47 | 0.00 | 0.47 | |
| dist_approx | 0.83 | 0.01 | 0.84 | |
| dist_approx_impl | 0.74 | 0.04 | 0.77 | |
| feature_parameters | 0.43 | 0.03 | 0.47 | |
| generate_synthetic_data | 0.03 | 0.00 | 0.03 | |
| hyper_parameters | 0.49 | 0.00 | 0.48 | |
| invprobit | 0 | 0 | 0 | |
| median_normalization | 0 | 0 | 0 | |
| mply_dbl | 0 | 0 | 0 | |
| pd_lm | 0.01 | 0.00 | 0.01 | |
| pd_row_t_test | 1.38 | 0.00 | 1.38 | |
| proDA | 1.2 | 0.0 | 1.2 | |
| reference_level | 0.44 | 0.00 | 0.44 | |
| result_names | 0.56 | 0.00 | 0.56 | |
| test_diff | 2.06 | 0.03 | 2.10 | |