Back to Build/check report for BioC 3.17 |
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This page was generated on 2023-01-02 09:00:43 -0500 (Mon, 02 Jan 2023).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
palomino5 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2022-12-25 r83502 ucrt) -- "Unsuffered Consequences" | 4165 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the peco package: Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1444/2158 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
peco 1.11.0 (landing page) Chiaowen Joyce Hsiao
| palomino5 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | ||||||||
Package: peco |
Version: 1.11.0 |
Command: F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:peco.install-out.txt --library=F:\biocbuild\bbs-3.17-bioc\R\library --no-vignettes --timings peco_1.11.0.tar.gz |
StartedAt: 2022-12-29 02:13:41 -0500 (Thu, 29 Dec 2022) |
EndedAt: 2022-12-29 02:21:38 -0500 (Thu, 29 Dec 2022) |
EllapsedTime: 476.8 seconds |
RetCode: 0 |
Status: OK |
CheckDir: peco.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:peco.install-out.txt --library=F:\biocbuild\bbs-3.17-bioc\R\library --no-vignettes --timings peco_1.11.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'F:/biocbuild/bbs-3.17-bioc-rtools43/meat/peco.Rcheck' * using R Under development (unstable) (2022-12-25 r83502 ucrt) * using platform: x86_64-w64-mingw32 (64-bit) * R was compiled by gcc.exe (GCC) 10.4.0 GNU Fortran (GCC) 10.4.0 * running under: Windows Server x64 (build 20348) * using session charset: UTF-8 * using option '--no-vignettes' * checking for file 'peco/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'peco' version '1.11.0' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'peco' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in 'vignettes' ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed fit_trendfilter 30.00 2.41 39.70 fit_loess 1.11 0.14 9.20 cycle_npreg_outsample 0.85 0.04 116.45 fit_bspline 0.39 0.01 8.05 data_transform_quantile 0.34 0.02 7.97 fit_cyclical_many 0.28 0.02 143.89 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
peco.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL peco ### ############################################################################## ############################################################################## * installing to library 'F:/biocbuild/bbs-3.17-bioc/R/library' * installing *source* package 'peco' ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (peco)
peco.Rcheck/peco-Ex.timings
name | user | system | elapsed | |
circ_dist | 0.00 | 0.02 | 0.02 | |
cycle_npreg_insample | 0 | 0 | 0 | |
cycle_npreg_outsample | 0.85 | 0.04 | 116.45 | |
data_transform_quantile | 0.34 | 0.02 | 7.97 | |
fit_bspline | 0.39 | 0.01 | 8.05 | |
fit_cyclical_many | 0.28 | 0.02 | 143.89 | |
fit_loess | 1.11 | 0.14 | 9.20 | |
fit_trendfilter | 30.00 | 2.41 | 39.70 | |
intensity2circle | 0.20 | 0.02 | 0.23 | |
rotation | 0.05 | 0.00 | 0.05 | |
shift_origin | 0.00 | 0.01 | 0.02 | |