Back to Build/check report for BioC 3.17 |
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This page was generated on 2023-01-02 09:00:39 -0500 (Mon, 02 Jan 2023).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
palomino5 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2022-12-25 r83502 ucrt) -- "Unsuffered Consequences" | 4165 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the mitoClone2 package: Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1213/2158 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
mitoClone2 1.5.0 (landing page) Benjamin Story
| palomino5 | Windows Server 2022 Datacenter / x64 | OK | OK | WARNINGS | OK | ||||||||
Package: mitoClone2 |
Version: 1.5.0 |
Command: rm -rf mitoClone2.buildbin-libdir && mkdir mitoClone2.buildbin-libdir && F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL --build --library=mitoClone2.buildbin-libdir mitoClone2_1.5.0.tar.gz |
StartedAt: 2022-12-29 05:24:35 -0500 (Thu, 29 Dec 2022) |
EndedAt: 2022-12-29 05:25:33 -0500 (Thu, 29 Dec 2022) |
EllapsedTime: 58.2 seconds |
RetCode: 0 |
Status: OK |
PackageFile: mitoClone2_1.5.0.zip |
PackageFileSize: 6.25 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf mitoClone2.buildbin-libdir && mkdir mitoClone2.buildbin-libdir && F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL --build --library=mitoClone2.buildbin-libdir mitoClone2_1.5.0.tar.gz ### ############################################################################## ############################################################################## * installing *source* package 'mitoClone2' ... ** using staged installation ** libs using C++ compiler: 'G__~1.EXE (GCC) 12.2.0' g++ -std=gnu++11 -D_FILE_OFFSET_BITS=64 ../inst/SCITEpkg/*.cpp -o scite ../inst/SCITEpkg/findBestTrees.cpp:56:8: warning: built-in function 'gamma' declared as non-function [-Wbuiltin-declaration-mismatch] 56 | double gamma = 1; | ^~~~~ ../inst/SCITEpkg/mcmcBinTreeMove.cpp: In function 'int pickNodeToMove(int*, int)': ../inst/SCITEpkg/mcmcBinTreeMove.cpp:75:1: warning: control reaches end of non-void function [-Wreturn-type] 75 | } | ^ mkdir -p "F:/biocbuild/bbs-3.17-bioc-rtools43/meat/mitoClone2.buildbin-libdir/00LOCK-mitoClone2/00new/mitoClone2/SCITE/" cp scite "F:/biocbuild/bbs-3.17-bioc-rtools43/meat/mitoClone2.buildbin-libdir/00LOCK-mitoClone2/00new/mitoClone2/SCITE/" rm scite g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rhtslib/include' -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c bam2R_10x.cpp -o bam2R_10x.o bam2R_10x.cpp:6:2: warning: "/*" within comment [-Wcomment] 6 | /************************************************************************************** | bam2R_10x.cpp:8:1: warning: "/*" within comment [-Wcomment] 8 | /********************************************************************** | bam2R_10x.cpp: In function 'void bam2R_pileup_function(const bam_pileup1_t*, int, int, nttable_t&, std::map<std::__cxx11::basic_string<char>, std::vector<int> >&)': bam2R_10x.cpp:75:17: warning: unused variable 'bc_absent' [-Wunused-variable] 75 | int bc_absent; | ^~~~~~~~~ bam2R_10x.cpp: In function 'SEXPREC* bam2R_10x(SEXP, SEXP, SEXP, SEXP, int*, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)': bam2R_10x.cpp:158:16: warning: unused variable 'iter' [-Wunused-variable] 158 | hts_itr_t *iter = NULL; | ^~~~ bam2R_10x.cpp:161:9: warning: unused variable 'c' [-Wunused-variable] 161 | int c = 0; | ^ g++ -std=gnu++11 -shared -s -static-libgcc -o mitoClone2.dll tmp.def bam2R_10x.o F:/biocbuild/bbs-3.17-bioc/R/library/Rhtslib/usrlib/x64/libhts.a -lz -lm -lbz2 -llzma -lcurl -lidn2 -lunistring -liconv -lssl -lcrypto -lcrypt32 -lwsock32 -lwldap32 -lssh2 -lgcrypt -lgpg-error -lws2_32 -lzstd -lregex -Lc:/rtools42/x86_64-w64-mingw32.static.posix/lib/x64 -Lc:/rtools42/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.17-bioc/R/bin/x64 -lR installing to F:/biocbuild/bbs-3.17-bioc-rtools43/meat/mitoClone2.buildbin-libdir/00LOCK-mitoClone2/00new/mitoClone2/libs/x64 ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * MD5 sums packaged installation of 'mitoClone2' as mitoClone2_1.5.0.zip * DONE (mitoClone2)