| Back to Build/check report for BioC 3.17 |
|
This page was generated on 2023-01-02 09:00:37 -0500 (Mon, 02 Jan 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| palomino5 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2022-12-25 r83502 ucrt) -- "Unsuffered Consequences" | 4165 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the messina package: Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1120/2158 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| messina 1.35.0 (landing page) Mark Pinese
| palomino5 | Windows Server 2022 Datacenter / x64 | OK | OK | WARNINGS | OK | ||||||||
| Package: messina |
| Version: 1.35.0 |
| Command: rm -rf messina.buildbin-libdir && mkdir messina.buildbin-libdir && F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL --build --library=messina.buildbin-libdir messina_1.35.0.tar.gz |
| StartedAt: 2022-12-29 05:21:52 -0500 (Thu, 29 Dec 2022) |
| EndedAt: 2022-12-29 05:22:30 -0500 (Thu, 29 Dec 2022) |
| EllapsedTime: 38.2 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: messina_1.35.0.zip |
| PackageFileSize: 863.8 KiB |
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### Running command:
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### rm -rf messina.buildbin-libdir && mkdir messina.buildbin-libdir && F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL --build --library=messina.buildbin-libdir messina_1.35.0.tar.gz
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* installing *source* package 'messina' ...
** using staged installation
** libs
using C++ compiler: 'G__~1.EXE (GCC) 12.2.0'
g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Classifier.cpp -o Classifier.o
g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Data.cpp -o Data.o
g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c crossval.cpp -o crossval.o
crossval.cpp: In function 'STATUS CrossVal::cv(int32_t, uint16_t, Classifier&, Result*, bool, bool)':
crossval.cpp:229:40: warning: 'void operator delete(void*)' called on pointer returned from a mismatched allocation function [-Wmismatched-new-delete]
229 | delete train_indices;
| ^~~~~~~~~~~~~
crossval.cpp:184:52: note: returned from 'void* operator new [](std::size_t)'
184 | if ((train_indices = new int32_t[train_size]) == NULL)
| ^
crossval.cpp:230:40: warning: 'void operator delete(void*)' called on pointer returned from a mismatched allocation function [-Wmismatched-new-delete]
230 | delete test_indices;
| ^~~~~~~~~~~~
crossval.cpp:187:50: note: returned from 'void* operator new [](std::size_t)'
187 | if ((test_indices = new int32_t[test_size]) == NULL)
| ^
crossval.cpp:231:40: warning: 'void operator delete(void*)' called on pointer returned from a mismatched allocation function [-Wmismatched-new-delete]
231 | delete in_test_set;
| ^~~~~~~~~~~
crossval.cpp:193:44: note: returned from 'void* operator new [](std::size_t)'
193 | if ((in_test_set = new bool[n_samps]) == NULL)
| ^
crossval.cpp:238:32: warning: 'void operator delete(void*)' called on pointer returned from a mismatched allocation function [-Wmismatched-new-delete]
238 | delete train_indices;
| ^~~~~~~~~~~~~
crossval.cpp:184:52: note: returned from 'void* operator new [](std::size_t)'
184 | if ((train_indices = new int32_t[train_size]) == NULL)
| ^
crossval.cpp:239:32: warning: 'void operator delete(void*)' called on pointer returned from a mismatched allocation function [-Wmismatched-new-delete]
239 | delete test_indices;
| ^~~~~~~~~~~~
crossval.cpp:187:50: note: returned from 'void* operator new [](std::size_t)'
187 | if ((test_indices = new int32_t[test_size]) == NULL)
| ^
crossval.cpp:240:32: warning: 'void operator delete(void*)' called on pointer returned from a mismatched allocation function [-Wmismatched-new-delete]
240 | delete in_test_set;
| ^~~~~~~~~~~
crossval.cpp:193:44: note: returned from 'void* operator new [](std::size_t)'
193 | if ((in_test_set = new bool[n_samps]) == NULL)
| ^
crossval.cpp:246:32: warning: 'void operator delete(void*)' called on pointer returned from a mismatched allocation function [-Wmismatched-new-delete]
246 | delete train_indices;
| ^~~~~~~~~~~~~
crossval.cpp:184:52: note: returned from 'void* operator new [](std::size_t)'
184 | if ((train_indices = new int32_t[train_size]) == NULL)
| ^
crossval.cpp:247:32: warning: 'void operator delete(void*)' called on pointer returned from a mismatched allocation function [-Wmismatched-new-delete]
247 | delete test_indices;
| ^~~~~~~~~~~~
crossval.cpp:187:50: note: returned from 'void* operator new [](std::size_t)'
187 | if ((test_indices = new int32_t[test_size]) == NULL)
| ^
crossval.cpp:248:32: warning: 'void operator delete(void*)' called on pointer returned from a mismatched allocation function [-Wmismatched-new-delete]
248 | delete in_test_set;
| ^~~~~~~~~~~
crossval.cpp:193:44: note: returned from 'void* operator new [](std::size_t)'
193 | if ((in_test_set = new bool[n_samps]) == NULL)
| ^
crossval.cpp:254:32: warning: 'void operator delete(void*)' called on pointer returned from a mismatched allocation function [-Wmismatched-new-delete]
254 | delete train_indices;
| ^~~~~~~~~~~~~
crossval.cpp:184:52: note: returned from 'void* operator new [](std::size_t)'
184 | if ((train_indices = new int32_t[train_size]) == NULL)
| ^
crossval.cpp:255:32: warning: 'void operator delete(void*)' called on pointer returned from a mismatched allocation function [-Wmismatched-new-delete]
255 | delete test_indices;
| ^~~~~~~~~~~~
crossval.cpp:187:50: note: returned from 'void* operator new [](std::size_t)'
187 | if ((test_indices = new int32_t[test_size]) == NULL)
| ^
crossval.cpp:256:32: warning: 'void operator delete(void*)' called on pointer returned from a mismatched allocation function [-Wmismatched-new-delete]
256 | delete in_test_set;
| ^~~~~~~~~~~
crossval.cpp:193:44: note: returned from 'void* operator new [](std::size_t)'
193 | if ((in_test_set = new bool[n_samps]) == NULL)
| ^
crossval.cpp:268:16: warning: 'void operator delete(void*)' called on pointer returned from a mismatched allocation function [-Wmismatched-new-delete]
268 | delete train_indices;
| ^~~~~~~~~~~~~
crossval.cpp:184:52: note: returned from 'void* operator new [](std::size_t)'
184 | if ((train_indices = new int32_t[train_size]) == NULL)
| ^
crossval.cpp:269:16: warning: 'void operator delete(void*)' called on pointer returned from a mismatched allocation function [-Wmismatched-new-delete]
269 | delete test_indices;
| ^~~~~~~~~~~~
crossval.cpp:187:50: note: returned from 'void* operator new [](std::size_t)'
187 | if ((test_indices = new int32_t[test_size]) == NULL)
| ^
crossval.cpp:270:16: warning: 'void operator delete(void*)' called on pointer returned from a mismatched allocation function [-Wmismatched-new-delete]
270 | delete in_test_set;
| ^~~~~~~~~~~
crossval.cpp:193:44: note: returned from 'void* operator new [](std::size_t)'
193 | if ((in_test_set = new bool[n_samps]) == NULL)
| ^
g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c errors.cpp -o errors.o
g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c init.cpp -o init.o
g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c messinaExtern.cpp -o messinaExtern.o
messinaExtern.cpp: In function 'STATUS convertRMatrix2Data(Rcpp::NumericMatrix&, Rcpp::LogicalVector&, Data&)':
messinaExtern.cpp:138:16: warning: 'void operator delete(void*)' called on pointer returned from a mismatched allocation function [-Wmismatched-new-delete]
138 | delete exprs_array;
| ^~~~~~~~~~~
messinaExtern.cpp:115:61: note: returned from 'void* operator new [](std::size_t)'
115 | if ((exprs_array = new uint16_t[n_probes * n_samples]) == NULL)
| ^
messinaExtern.cpp:139:16: warning: 'void operator delete(void*)' called on pointer returned from a mismatched allocation function [-Wmismatched-new-delete]
139 | delete class_array;
| ^~~~~~~~~~~
messinaExtern.cpp:119:46: note: returned from 'void* operator new [](std::size_t)'
119 | if ((class_array = new bool[n_samples]) == NULL)
| ^
messinaExtern.cpp: In function 'Rcpp::List messinaC(Rcpp::NumericMatrix, Rcpp::LogicalVector, uint32_t, uint32_t, float, float, bool, bool)':
messinaExtern.cpp:86:24: warning: 'void operator delete(void*)' called on pointer returned from a mismatched allocation function [-Wmismatched-new-delete]
86 | delete results;
| ^~~~~~~
messinaExtern.cpp:78:51: note: returned from 'void* operator new [](std::size_t)'
78 | if ((results = new Result[data.getNGenes()]) == NULL)
| ^
messinaExtern.cpp:92:16: warning: 'void operator delete(void*)' called on pointer returned from a mismatched allocation function [-Wmismatched-new-delete]
92 | delete results;
| ^~~~~~~
messinaExtern.cpp:78:51: note: returned from 'void* operator new [](std::size_t)'
78 | if ((results = new Result[data.getNGenes()]) == NULL)
| ^
g++ -std=gnu++11 -shared -s -static-libgcc -o messina.dll tmp.def Classifier.o Data.o RcppExports.o crossval.o errors.o init.o messinaExtern.o -Lc:/rtools42/x86_64-w64-mingw32.static.posix/lib/x64 -Lc:/rtools42/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.17-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.17-bioc-rtools43/meat/messina.buildbin-libdir/00LOCK-messina/00new/messina/libs/x64
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'messina' as messina_1.35.0.zip
* DONE (messina)