| Back to Build/check report for BioC 3.17 |
|
This page was generated on 2023-01-02 09:00:37 -0500 (Mon, 02 Jan 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| palomino5 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2022-12-25 r83502 ucrt) -- "Unsuffered Consequences" | 4165 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the mbkmeans package: Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1095/2158 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| mbkmeans 1.15.0 (landing page) Davide Risso
| palomino5 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | ||||||||
| Package: mbkmeans |
| Version: 1.15.0 |
| Command: rm -rf mbkmeans.buildbin-libdir && mkdir mbkmeans.buildbin-libdir && F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL --build --library=mbkmeans.buildbin-libdir mbkmeans_1.15.0.tar.gz |
| StartedAt: 2022-12-29 05:21:09 -0500 (Thu, 29 Dec 2022) |
| EndedAt: 2022-12-29 05:22:04 -0500 (Thu, 29 Dec 2022) |
| EllapsedTime: 54.7 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: mbkmeans_1.15.0.zip |
| PackageFileSize: 723.9 KiB |
##############################################################################
##############################################################################
###
### Running command:
###
### rm -rf mbkmeans.buildbin-libdir && mkdir mbkmeans.buildbin-libdir && F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL --build --library=mbkmeans.buildbin-libdir mbkmeans_1.15.0.tar.gz
###
##############################################################################
##############################################################################
* installing *source* package 'mbkmeans' ...
** using staged installation
** libs
using C++ compiler: 'G__~1.EXE (GCC) 12.2.0'
using C++11
g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/RcppArmadillo/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rhdf5lib/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/ClusterR/include' -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/RcppArmadillo/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rhdf5lib/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/ClusterR/include' -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c mini_batch.cpp -o mini_batch.o
In file included from F:/biocbuild/bbs-3.17-bioc/R/library/RcppArmadillo/include/armadillo:22,
from F:/biocbuild/bbs-3.17-bioc/R/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:56,
from F:/biocbuild/bbs-3.17-bioc/R/library/RcppArmadillo/include/RcppArmadillo.h:29,
from mini_batch.cpp:2:
F:/biocbuild/bbs-3.17-bioc/R/library/RcppArmadillo/include/armadillo_bits/config.hpp:338:86: note: '#pragma message: INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed'
338 | #pragma message ("INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed")
| ^
F:/biocbuild/bbs-3.17-bioc/R/library/RcppArmadillo/include/armadillo_bits/config.hpp:343:75: note: '#pragma message: INFO: suggest to use ARMA_WARN_LEVEL option instead'
343 | #pragma message ("INFO: suggest to use ARMA_WARN_LEVEL option instead")
| ^
F:/biocbuild/bbs-3.17-bioc/R/library/RcppArmadillo/include/armadillo_bits/config.hpp:346:61: note: '#pragma message: INFO: see the documentation for details'
346 | #pragma message ("INFO: see the documentation for details")
| ^
In file included from mini_batch.cpp:3:
F:/biocbuild/bbs-3.17-bioc/R/library/ClusterR/include/ClusterRHeader.h: In member function 'arma::mat clustR::ClustHeader::KMEANS_arma(arma::mat&, int, int, bool, std::string, Rcpp::Nullable<Rcpp::Matrix<14> >, int)':
F:/biocbuild/bbs-3.17-bioc/R/library/ClusterR/include/ClusterRHeader.h:926:14: warning: variable 'status' set but not used [-Wunused-but-set-variable]
926 | bool status;
| ^~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/ClusterR/include/ClusterRHeader.h: In member function 'Rcpp::List clustR::ClustHeader::GMM_arma(arma::mat&, int, std::string, std::string, int, int, bool, double, int)':
F:/biocbuild/bbs-3.17-bioc/R/library/ClusterR/include/ClusterRHeader.h:1522:14: warning: variable 'status' set but not used [-Wunused-but-set-variable]
1522 | bool status;
| ^~~~~~
g++ -shared -s -static-libgcc -o mbkmeans.dll tmp.def RcppExports.o mini_batch.o -Lc:/rtools42/x86_64-w64-mingw32.static.posix/lib/x64 -Lc:/rtools42/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.17-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.17-bioc-rtools43/meat/mbkmeans.buildbin-libdir/00LOCK-mbkmeans/00new/mbkmeans/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'mbkmeans' as mbkmeans_1.15.0.zip
* DONE (mbkmeans)