| Back to Build/check report for BioC 3.17 |
|
This page was generated on 2023-01-02 09:00:36 -0500 (Mon, 02 Jan 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| palomino5 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2022-12-25 r83502 ucrt) -- "Unsuffered Consequences" | 4165 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the made4 package: Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1061/2158 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| made4 1.73.0 (landing page) Aedin Culhane
| palomino5 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | ||||||||
| Package: made4 |
| Version: 1.73.0 |
| Command: F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:made4.install-out.txt --library=F:\biocbuild\bbs-3.17-bioc\R\library --no-vignettes --timings made4_1.73.0.tar.gz |
| StartedAt: 2022-12-29 01:00:13 -0500 (Thu, 29 Dec 2022) |
| EndedAt: 2022-12-29 01:02:09 -0500 (Thu, 29 Dec 2022) |
| EllapsedTime: 115.8 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: made4.Rcheck |
| Warnings: 0 |
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### Running command:
###
### F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:made4.install-out.txt --library=F:\biocbuild\bbs-3.17-bioc\R\library --no-vignettes --timings made4_1.73.0.tar.gz
###
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* using log directory 'F:/biocbuild/bbs-3.17-bioc-rtools43/meat/made4.Rcheck'
* using R Under development (unstable) (2022-12-25 r83502 ucrt)
* using platform: x86_64-w64-mingw32 (64-bit)
* R was compiled by
gcc.exe (GCC) 10.4.0
GNU Fortran (GCC) 10.4.0
* running under: Windows Server x64 (build 20348)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'made4/DESCRIPTION' ... OK
* this is package 'made4' version '1.73.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'made4' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
checkRd: (-1) NCI60.Rd:19: Escaped LaTeX specials: \$
checkRd: (-1) NCI60.Rd:22: Escaped LaTeX specials: \$
checkRd: (-1) NCI60.Rd:25: Escaped LaTeX specials: \$
checkRd: (-1) NCI60.Rd:30: Escaped LaTeX specials: \$
checkRd: (-1) NCI60.Rd:31: Escaped LaTeX specials: \$ \$
checkRd: (-1) NCI60.Rd:32: Escaped LaTeX specials: \$ \$
checkRd: (-1) NCI60.Rd:33: Escaped LaTeX specials: \$ \$
checkRd: (-1) NCI60.Rd:50: Escaped LaTeX specials: \$
checkRd: (-1) NCI60.Rd:52: Escaped LaTeX specials: \$ \$
checkRd: (-1) NCI60.Rd:60: Escaped LaTeX specials: \$
checkRd: (-1) NCI60.Rd:64: Escaped LaTeX specials: \$ \$
prepare_Rd: asDataFrame.Rd:30: Dropping empty section \examples
checkRd: (-1) between.graph.Rd:17: Escaped LaTeX specials: \$ \$
checkRd: (-1) between.graph.Rd:25: Escaped LaTeX specials: \$
checkRd: (-1) between.graph.Rd:26: Escaped LaTeX specials: \$
checkRd: (-1) between.graph.Rd:32: Escaped LaTeX specials: \$ \$
checkRd: (-1) between.graph.Rd:34: Escaped LaTeX specials: \$
checkRd: (-1) bga.Rd:27: Escaped LaTeX specials: \$ \$ \$
checkRd: (-1) bga.Rd:70: Escaped LaTeX specials: \$ \$
checkRd: (-1) bga.Rd:76: Escaped LaTeX specials: \$
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checkRd: (-1) cia.Rd:69: Escaped LaTeX specials: \$ \$
checkRd: (-1) cia.Rd:77: Escaped LaTeX specials: \$
checkRd: (-1) cia.Rd:78: Escaped LaTeX specials: \$
checkRd: (-1) cia.Rd:85: Escaped LaTeX specials: \$ \$
checkRd: (-1) do3d.Rd:22: Escaped LaTeX specials: \$ \$
checkRd: (-1) do3d.Rd:24: Escaped LaTeX specials: \$ \$
checkRd: (-1) genes1d.Rd:9: Escaped LaTeX specials: \$ \$
checkRd: (-1) genes1d.Rd:16: Escaped LaTeX specials: \$ \$
checkRd: (-1) genes1d.Rd:22: Escaped LaTeX specials: \$ \$
checkRd: (-1) html3D.Rd:19: Escaped LaTeX specials: \$ \$
checkRd: (-1) html3D.Rd:20: Escaped LaTeX specials: \$ \$
checkRd: (-1) jmol3D.Rd:14: Escaped LaTeX specials: \$ \$
checkRd: (-1) jmol3D.Rd:15: Escaped LaTeX specials: \$ \$
checkRd: (-1) khan.Rd:15: Escaped LaTeX specials: \$
checkRd: (-1) khan.Rd:17: Escaped LaTeX specials: \$
checkRd: (-1) khan.Rd:19: Escaped LaTeX specials: \$
checkRd: (-1) khan.Rd:20: Escaped LaTeX specials: \$ \$
checkRd: (-1) khan.Rd:21: Escaped LaTeX specials: \$
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checkRd: (-1) khan.Rd:33: Escaped LaTeX specials: \$
checkRd: (-1) khan.Rd:34: Escaped LaTeX specials: \$
checkRd: (-1) khan.Rd:35: Escaped LaTeX specials: \$
checkRd: (-1) khan.Rd:36: Escaped LaTeX specials: \$
checkRd: (-1) khan.Rd:37: Escaped LaTeX specials: \$
checkRd: (-1) khan.Rd:38: Escaped LaTeX specials: \$
checkRd: (-1) ord.Rd:27: Escaped LaTeX specials: \$ \$
checkRd: (-1) ord.Rd:53: Escaped LaTeX specials: \$
checkRd: (-1) ord.Rd:66: Escaped LaTeX specials: \$ \$
checkRd: (-1) ord.Rd:74: Escaped LaTeX specials: \$
checkRd: (-1) plotarrays.Rd:6: Escaped LaTeX specials: \$
checkRd: (-1) plotgenes.Rd:6: Escaped LaTeX specials: \$
checkRd: (-1) s.var.Rd:35: Escaped LaTeX specials: \$ \$ \$
checkRd: (-1) s.var.Rd:38: Escaped LaTeX specials: \$ \$
checkRd: (-1) sumstats.Rd:16: Escaped LaTeX specials: \$ \$
checkRd: (-1) sumstats.Rd:17: Escaped LaTeX specials: \$
checkRd: (-1) topgenes.Rd:16: Escaped LaTeX specials: \$ \$
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checkRd: (-1) topgenes.Rd:22: Escaped LaTeX specials: \$ \$
checkRd: (-1) topgenes.Rd:33: Escaped LaTeX specials: \$ \$
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
'F:/biocbuild/bbs-3.17-bioc-rtools43/meat/made4.Rcheck/00check.log'
for details.
made4.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL made4 ### ############################################################################## ############################################################################## * installing to library 'F:/biocbuild/bbs-3.17-bioc/R/library' * installing *source* package 'made4' ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (made4)
made4.Rcheck/made4-Ex.timings
| name | user | system | elapsed | |
| NCI60 | 0 | 0 | 0 | |
| bet.coinertia | 0.01 | 0.00 | 0.02 | |
| between.graph | 0.21 | 0.03 | 0.23 | |
| bga | 0.25 | 0.02 | 0.27 | |
| bga.jackknife | 1.01 | 0.09 | 1.11 | |
| bga.suppl | 0.22 | 0.07 | 0.28 | |
| cia | 0.14 | 0.01 | 0.16 | |
| commonMap | 0.02 | 0.00 | 0.01 | |
| comparelists | 0 | 0 | 0 | |
| do3d | 0.32 | 0.00 | 0.33 | |
| genes1d | 0.07 | 0.02 | 0.08 | |
| getcol | 0.03 | 0.00 | 0.03 | |
| graph1D | 0.05 | 0.01 | 0.06 | |
| heatplot | 1.17 | 0.05 | 1.22 | |
| html3D | 0.14 | 0.00 | 0.16 | |
| isDataFrame | 0.01 | 0.01 | 0.03 | |
| khan | 0.00 | 0.02 | 0.01 | |
| ord | 0.22 | 0.00 | 0.22 | |
| overview | 0.13 | 0.03 | 0.15 | |
| plotarrays | 0.29 | 0.00 | 0.30 | |
| plotgenes | 0.14 | 0.00 | 0.14 | |
| prettyDend | 0.1 | 0.0 | 0.1 | |
| randomiser | 0 | 0 | 0 | |
| s.var | 0.14 | 0.01 | 0.15 | |
| sumstats | 0.14 | 0.02 | 0.16 | |
| suppl | 0.31 | 0.01 | 0.33 | |
| topgenes | 0.08 | 0.00 | 0.07 | |