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This page was generated on 2023-01-02 09:00:30 -0500 (Mon, 02 Jan 2023).

HostnameOSArch (*)R versionInstalled pkgs
palomino5Windows Server 2022 Datacenterx64R Under development (unstable) (2022-12-25 r83502 ucrt) -- "Unsuffered Consequences" 4165
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BUILD BIN results for genefilter on palomino5


To the developers/maintainers of the genefilter package:
Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 743/2158HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
genefilter 1.81.0  (landing page)
Bioconductor Package Maintainer
Snapshot Date: 2022-12-28 11:00:06 -0500 (Wed, 28 Dec 2022)
git_url: https://git.bioconductor.org/packages/genefilter
git_branch: master
git_last_commit: 1bb91bb
git_last_commit_date: 2022-11-01 10:34:55 -0500 (Tue, 01 Nov 2022)
palomino5Windows Server 2022 Datacenter / x64  OK    OK    WARNINGS    OK  

Summary

Package: genefilter
Version: 1.81.0
Command: rm -rf genefilter.buildbin-libdir && mkdir genefilter.buildbin-libdir && F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL --build --library=genefilter.buildbin-libdir genefilter_1.81.0.tar.gz
StartedAt: 2022-12-29 05:11:01 -0500 (Thu, 29 Dec 2022)
EndedAt: 2022-12-29 05:11:31 -0500 (Thu, 29 Dec 2022)
EllapsedTime: 29.4 seconds
RetCode: 0
Status:   OK  
PackageFile: genefilter_1.81.0.zip
PackageFileSize: 1.016 MiB

Command output

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### Running command:
###
###   rm -rf genefilter.buildbin-libdir && mkdir genefilter.buildbin-libdir && F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL --build --library=genefilter.buildbin-libdir genefilter_1.81.0.tar.gz
###
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* installing *source* package 'genefilter' ...
** using staged installation
** libs
using C compiler: 'gcc.exe (GCC) 12.2.0'
using Fortran compiler: 'GNU Fortran (GCC) 12.2.0'
using C++ compiler: 'G__~1.EXE (GCC) 12.2.0'
g++ -std=gnu++11  -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG     -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c half_range_mode.cpp -o half_range_mode.o
gcc  -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG     -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c init.c -o init.o
gcc  -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG     -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c nd.c -o nd.o
gcc  -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG     -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c pAUC.c -o pAUC.o
pAUC.c: In function 'pAUC':
pAUC.c:140:13: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses]
  140 |     if(rows != INTEGER(dimSens)[1] | columns != INTEGER(dimSens)[0])
      |        ~~~~~^~~~~~~~~~~~~~~~~~~~~~
gcc  -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG     -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c rowPAUCs.c -o rowPAUCs.o
gcc  -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG     -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c rowttests.c -o rowttests.o
gfortran      -O2  -mfpmath=sse -msse2 -mstackrealign  -c ttest.f -o ttest.o
g++ -std=gnu++11 -shared -s -static-libgcc -o genefilter.dll tmp.def half_range_mode.o init.o nd.o pAUC.o rowPAUCs.o rowttests.o ttest.o -Lc:/rtools42/x86_64-w64-mingw32.static.posix/lib/x64 -Lc:/rtools42/x86_64-w64-mingw32.static.posix/lib -lgfortran -lm -lquadmath -LF:/biocbuild/bbs-3.17-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.17-bioc-rtools43/meat/genefilter.buildbin-libdir/00LOCK-genefilter/00new/genefilter/libs/x64
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'genefilter' as genefilter_1.81.0.zip
* DONE (genefilter)