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### Running command:
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### F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL gaga
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* installing to library 'F:/biocbuild/bbs-3.17-bioc/R/library'
* installing *source* package 'gaga' ...
** using staged installation
** libs
using C compiler: 'gcc.exe (GCC) 12.2.0'
gcc -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c cseqdesma.c -o cseqdesma.o
gcc -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c cstat.c -o cstat.o
cstat.c: In function 'free_vector':
cstat.c:667:20: warning: the comparison will always evaluate as 'true' for the pointer operand in 'v + (sizetype)((long long unsigned int)nl * 4)' must not be NULL [-Waddress]
667 | if( (v+nl) != NULL ) free((char *) (v+nl));
| ^~
cstat.c: In function 'free_dvector':
cstat.c:673:20: warning: the comparison will always evaluate as 'true' for the pointer operand in 'v + (sizetype)((long long unsigned int)nl * 8)' must not be NULL [-Waddress]
673 | if( (v+nl) != NULL ) free((char *) (v+nl));
| ^~
cstat.c: In function 'free_ivector':
cstat.c:679:20: warning: the comparison will always evaluate as 'true' for the pointer operand in 'v + (sizetype)((long long unsigned int)nl * 4)' must not be NULL [-Waddress]
679 | if( (v+nl) != NULL ) free((char *) (v+nl));
| ^~
cstat.c: In function 'free_dmatrix':
cstat.c:687:47: warning: the comparison will always evaluate as 'true' for the pointer operand in '*(m + (sizetype)((long long unsigned int)i * 8)) + (sizetype)((long long unsigned int)ncl * 8)' must not be NULL [-Waddress]
687 | for(i=nrh;i>=nrl;i--) {if( (m[i]+ncl) != NULL )
| ^~
cstat.c:689:21: warning: the comparison will always evaluate as 'true' for the pointer operand in 'm + (sizetype)((long long unsigned int)nrl * 8)' must not be NULL [-Waddress]
689 | if( (m+nrl) != NULL ) free((char *) (m+nrl));
| ^~
cstat.c: In function 'free_imatrix':
cstat.c:697:47: warning: the comparison will always evaluate as 'true' for the pointer operand in '*(m + (sizetype)((long long unsigned int)i * 8)) + (sizetype)((long long unsigned int)ncl * 4)' must not be NULL [-Waddress]
697 | for(i=nrh;i>=nrl;i--) {if( (m[i]+ncl) != NULL )
| ^~
cstat.c:699:21: warning: the comparison will always evaluate as 'true' for the pointer operand in 'm + (sizetype)((long long unsigned int)nrl * 8)' must not be NULL [-Waddress]
699 | if( (m+nrl) != NULL ) free((char *) (m+nrl));
| ^~
cstat.c: At top level:
cstat.c:22:19: warning: 'css_c_sccs_id' defined but not used [-Wunused-const-variable=]
22 | static const char css_c_sccs_id[] = "@(#)$Workfile: rand.c$ $Revision: 5$";
| ^~~~~~~~~~~~~
cstat.c:21:19: warning: 'vector_c_sccs_id' defined but not used [-Wunused-const-variable=]
21 | static const char vector_c_sccs_id[] = "%W%";
| ^~~~~~~~~~~~~~~~
cstat.c:20:19: warning: 'nrutil_c_sccs_id' defined but not used [-Wunused-const-variable=]
20 | static const char nrutil_c_sccs_id[] = "%W%";
| ^~~~~~~~~~~~~~~~
cstat.c:19:19: warning: 'mess_c_sccs_id' defined but not used [-Wunused-const-variable=]
19 | static const char mess_c_sccs_id[] = "%W%";
| ^~~~~~~~~~~~~~
cstat.c:18:19: warning: 'interface_c_sccs_id' defined but not used [-Wunused-const-variable=]
18 | static const char interface_c_sccs_id[] = "%W%";
| ^~~~~~~~~~~~~~~~~~~
cstat.c: In function 'lu_inverse':
cstat.c:1282:4: warning: 'lu_solve' accessing 8 bytes in a region of size 0 [-Wstringop-overflow=]
1282 | lu_solve(a,n,indx,col);
| ^~~~~~~~~~~~~~~~~~~~~~
cstat.c:1282:4: note: referencing argument 4 of type 'double[0]'
cstat.c:1237:6: note: in a call to function 'lu_solve'
1237 | void lu_solve(double **a, int n, int *indx, double b[]) {
| ^~~~~~~~
cstat.c:1282:4: warning: 'lu_solve' accessing 8 bytes in a region of size 0 [-Wstringop-overflow=]
1282 | lu_solve(a,n,indx,col);
| ^~~~~~~~~~~~~~~~~~~~~~
cstat.c:1282:4: note: referencing argument 4 of type 'double[0]'
cstat.c:1237:6: note: in a call to function 'lu_solve'
1237 | void lu_solve(double **a, int n, int *indx, double b[]) {
| ^~~~~~~~
In function 'free_dvector',
inlined from 'dirmin' at cstat.c:4556:2:
cstat.c:673:30: warning: 'free' called on pointer 'xicom' with nonzero offset 8 [-Wfree-nonheap-object]
673 | if( (v+nl) != NULL ) free((char *) (v+nl));
| ^~~~~~~~~~~~~~~~~~~~~~
cstat.c: In function 'dirmin':
cstat.c:4523:15: note: declared here
4523 | double *pcom,*xicom,(*nrfunc)(double []);
| ^~~~~
In function 'free_dvector',
inlined from 'dirmin' at cstat.c:4557:2:
cstat.c:673:30: warning: 'free' called on pointer 'pcom' with nonzero offset 8 [-Wfree-nonheap-object]
673 | if( (v+nl) != NULL ) free((char *) (v+nl));
| ^~~~~~~~~~~~~~~~~~~~~~
cstat.c: In function 'dirmin':
cstat.c:4523:9: note: declared here
4523 | double *pcom,*xicom,(*nrfunc)(double []);
| ^~~~
cstat.c: In function 'minimize':
cstat.c:4490:7: warning: 'dirmin' accessing 8 bytes in a region of size 0 [-Wstringop-overflow=]
4490 | dirmin(th,dirinit,n,fret,f,itmax,eps);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cstat.c:4490:7: note: referencing argument 2 of type 'double[0]'
cstat.c:4525:6: note: in a call to function 'dirmin'
4525 | void dirmin(double p[], double xi[], int n, double *fret, double (*func)(double []), int itmax, double dirminEPS) {
| ^~~~~~
cstat.c:4505:9: warning: 'dirmin' accessing 8 bytes in a region of size 0 [-Wstringop-overflow=]
4505 | dirmin(th,dirinit,n,fret,f,itmax,eps);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cstat.c:4505:9: note: referencing argument 2 of type 'double[0]'
cstat.c:4525:6: note: in a call to function 'dirmin'
4525 | void dirmin(double p[], double xi[], int n, double *fret, double (*func)(double []), int itmax, double dirminEPS) {
| ^~~~~~
cstat.c:4490:7: warning: 'dirmin' accessing 8 bytes in a region of size 0 [-Wstringop-overflow=]
4490 | dirmin(th,dirinit,n,fret,f,itmax,eps);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cstat.c:4490:7: note: referencing argument 2 of type 'double[0]'
cstat.c:4525:6: note: in a call to function 'dirmin'
4525 | void dirmin(double p[], double xi[], int n, double *fret, double (*func)(double []), int itmax, double dirminEPS) {
| ^~~~~~
cstat.c:4505:9: warning: 'dirmin' accessing 8 bytes in a region of size 0 [-Wstringop-overflow=]
4505 | dirmin(th,dirinit,n,fret,f,itmax,eps);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cstat.c:4505:9: note: referencing argument 2 of type 'double[0]'
cstat.c:4525:6: note: in a call to function 'dirmin'
4525 | void dirmin(double p[], double xi[], int n, double *fret, double (*func)(double []), int itmax, double dirminEPS) {
| ^~~~~~
gcc -shared -s -static-libgcc -o gaga.dll tmp.def cseqdesma.o cstat.o -Lc:/rtools42/x86_64-w64-mingw32.static.posix/lib/x64 -Lc:/rtools42/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.17-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.17-bioc/R/library/00LOCK-gaga/00new/gaga/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (gaga)