Back to Build/check report for BioC 3.17
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This page was generated on 2023-01-02 09:00:29 -0500 (Mon, 02 Jan 2023).

HostnameOSArch (*)R versionInstalled pkgs
palomino5Windows Server 2022 Datacenterx64R Under development (unstable) (2022-12-25 r83502 ucrt) -- "Unsuffered Consequences" 4165
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CHECK results for fcScan on palomino5


To the developers/maintainers of the fcScan package:
Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 657/2158HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
fcScan 1.13.0  (landing page)
Pierre Khoueiry Abdullah El-Kurdi
Snapshot Date: 2022-12-28 11:00:06 -0500 (Wed, 28 Dec 2022)
git_url: https://git.bioconductor.org/packages/fcScan
git_branch: master
git_last_commit: 4f8702f
git_last_commit_date: 2022-11-01 11:20:20 -0500 (Tue, 01 Nov 2022)
palomino5Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  

Summary

Package: fcScan
Version: 1.13.0
Command: F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:fcScan.install-out.txt --library=F:\biocbuild\bbs-3.17-bioc\R\library --no-vignettes --timings fcScan_1.13.0.tar.gz
StartedAt: 2022-12-28 23:46:05 -0500 (Wed, 28 Dec 2022)
EndedAt: 2022-12-28 23:58:17 -0500 (Wed, 28 Dec 2022)
EllapsedTime: 732.5 seconds
RetCode: 0
Status:   OK  
CheckDir: fcScan.Rcheck
Warnings: 0

Command output

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##############################################################################
###
### Running command:
###
###   F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:fcScan.install-out.txt --library=F:\biocbuild\bbs-3.17-bioc\R\library --no-vignettes --timings fcScan_1.13.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'F:/biocbuild/bbs-3.17-bioc-rtools43/meat/fcScan.Rcheck'
* using R Under development (unstable) (2022-12-25 r83502 ucrt)
* using platform: x86_64-w64-mingw32 (64-bit)
* R was compiled by
    gcc.exe (GCC) 10.4.0
    GNU Fortran (GCC) 10.4.0
* running under: Windows Server x64 (build 20348)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'fcScan/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'fcScan' version '1.13.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'fcScan' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
           user system elapsed
getCluster 0.19      0   10.97
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
  Running 'runTests.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

Installation output

fcScan.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL fcScan
###
##############################################################################
##############################################################################


* installing to library 'F:/biocbuild/bbs-3.17-bioc/R/library'
* installing *source* package 'fcScan' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (fcScan)

Tests output

fcScan.Rcheck/tests/runTests.Rout


R Under development (unstable) (2022-12-25 r83502 ucrt) -- "Unsuffered Consequences"
Copyright (C) 2022 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> BiocGenerics:::testPackage("fcScan")
Loading required package: GenomicRanges
Loading required package: stats4
Loading required package: BiocGenerics

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:stats':

    IQR, mad, sd, var, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, aperm, append,
    as.data.frame, basename, cbind, colnames, dirname, do.call,
    duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
    lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
    pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
    tapply, union, unique, unsplit, which.max, which.min

Loading required package: S4Vectors

Attaching package: 'S4Vectors'

The following objects are masked from 'package:base':

    I, expand.grid, unname

Loading required package: IRanges

Attaching package: 'IRanges'

The following object is masked from 'package:grDevices':

    windows

Loading required package: GenomeInfoDb
17  entries loaded 
Running getCluster using 1 threads
Time difference of 11.14947 secs
Sites in condition do not match sites in data
3  entries loaded 
Running getCluster using 1 threads
Time difference of 10.9737 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 10.78736 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 10.58225 secs
17  entries loaded 
Running getCluster using 1 threads
No cluster found
17  entries loaded 
Running getCluster using 1 threads
Time difference of 10.95381 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 10.7337 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 11.94256 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 11.02157 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 10.78355 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 11.11606 secs
6  entries loaded 
Running getCluster using 1 threads
Time difference of 10.56104 secs
6  entries loaded 
Running getCluster using 1 threads
Time difference of 10.5797 secs
6  entries loaded 
Running getCluster using 1 threads
Time difference of 11.28442 secs
6  entries loaded 
Running getCluster using 1 threads
Time difference of 10.86643 secs
10  entries loaded 
Running getCluster using 1 threads
Time difference of 11.31217 secs
10  entries loaded 
Running getCluster using 1 threads
No cluster found
10  entries loaded 
Running getCluster using 1 threads
Time difference of 11.24879 secs
16  entries loaded 
Running getCluster using 1 threads
Time difference of 11.47049 secs
6  entries loaded 
Running getCluster using 1 threads
Time difference of 10.7524 secs
6  entries loaded 
Running getCluster using 1 threads
Time difference of 12.04111 secs
6  entries loaded 
Running getCluster using 1 threads
Time difference of 11.87455 secs
6  entries loaded 
Running getCluster using 1 threads
Time difference of 12.02835 secs
6  entries loaded 
Running getCluster using 1 threads
Time difference of 11.3189 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 10.74844 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 11.4912 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 11.05719 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 11.78534 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 11.05142 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 11.07839 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 10.75415 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 11.50668 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 11.51813 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 11.28957 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 11.15441 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 12.2767 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 12.65006 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 11.86558 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 11.46127 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 11.20961 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 12.13854 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 12.89755 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 11.83181 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 12.54876 secs


RUNIT TEST PROTOCOL -- Wed Dec 28 23:58:01 2022 
*********************************************** 
Number of test functions: 1 
Number of errors: 0 
Number of failures: 0 

 
1 Test Suite : 
fcScan RUnit Tests - 1 test function, 0 errors, 0 failures
Number of test functions: 1 
Number of errors: 0 
Number of failures: 0 
> 
> proc.time()
   user  system elapsed 
  13.03    1.12  511.48

Example timings

fcScan.Rcheck/fcScan-Ex.timings

nameusersystemelapsed
getCluster 0.19 0.0010.97