Build/check report for BioC 3.17 - CHECK results for destiny on palomino5

Hostname	OS	Arch (*)	R version	Installed pkgs
palomino5	Windows Server 2022 Datacenter	x64	R Under development (unstable) (2022-12-25 r83502 ucrt) -- "Unsuffered Consequences"	4165
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

Package: destiny

Version: 3.13.0

Command: F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:destiny.install-out.txt --library=F:\biocbuild\bbs-3.17-bioc\R\library --no-vignettes --timings destiny_3.13.0.tar.gz

StartedAt: 2022-12-28 23:13:30 -0500 (Wed, 28 Dec 2022)

EndedAt: 2022-12-28 23:16:55 -0500 (Wed, 28 Dec 2022)

EllapsedTime: 205.7 seconds

RetCode: 0

Status: OK

CheckDir: destiny.Rcheck

Warnings: 0

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### Running command:
###
###   F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:destiny.install-out.txt --library=F:\biocbuild\bbs-3.17-bioc\R\library --no-vignettes --timings destiny_3.13.0.tar.gz
###
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* using log directory 'F:/biocbuild/bbs-3.17-bioc-rtools43/meat/destiny.Rcheck'
* using R Under development (unstable) (2022-12-25 r83502 ucrt)
* using platform: x86_64-w64-mingw32 (64-bit)
* R was compiled by
    gcc.exe (GCC) 10.4.0
    GNU Fortran (GCC) 10.4.0
* running under: Windows Server x64 (build 20348)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'destiny/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'destiny' version '3.13.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'destiny' can be installed ... OK
* used C++ compiler: 'G__~1.EXE (GCC) 12.2.0'
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Packages listed in more than one of Depends, Imports, Suggests, Enhances:
  'rgl' 'SingleCellExperiment'
A package should be listed in only one of these fields.
'LinkingTo' for 'grDevices' is unused as it has no 'include' directory
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... NOTE
Found the following apparent S3 methods exported but not registered:
  plot.DPT plot.DiffusionMap
See section 'Registering S3 methods' in the 'Writing R Extensions'
manual.
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
checkRd: (-1) Gene-Relevance.Rd:94: Escaped LaTeX specials: \_
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... NOTE
S3 methods shown with full name in documentation object 'plot.DPT':
  'plot.DPT'

S3 methods shown with full name in documentation object 'plot.DiffusionMap':
  'plot.DiffusionMap'

The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking compiled code ... NOTE
Note: information on .o files for x64 is not available
File 'F:/biocbuild/bbs-3.17-bioc/R/library/destiny/libs/x64/destiny.dll':
  Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)
  Found 'exit', possibly from 'exit' (C), 'stop' (Fortran)

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs nor [v]sprintf. The detected symbols are linked into
the code but might come from libraries and not actually be called.

See 'Writing portable packages' in the 'Writing R Extensions' manual.
* checking files in 'vignettes' ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
        user system elapsed
destiny 9.39   0.03    9.42
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
  Running 'testthat.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 5 NOTEs
See
  'F:/biocbuild/bbs-3.17-bioc-rtools43/meat/destiny.Rcheck/00check.log'
for details.

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### Running command:
###
###   F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL destiny
###
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* installing to library 'F:/biocbuild/bbs-3.17-bioc/R/library'
* installing *source* package 'destiny' ...
** using staged installation
** libs
using C++ compiler: 'G__~1.EXE (GCC) 12.2.0'
using C++11
g++  -std=gnu++11 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/grDevices/include'   -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include"  -ggdb   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c RcppExports.cpp -o RcppExports.o
In file included from F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/Core:397,
                 from F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from RcppExports.cpp:4:
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:60:39: warning: ignoring attributes on template argument '__m128' [-Wignored-attributes]
   60 | template<> struct is_arithmetic<__m128>  { enum { value = true }; };
      |                                       ^
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:61:40: warning: ignoring attributes on template argument '__m128i' [-Wignored-attributes]
   61 | template<> struct is_arithmetic<__m128i> { enum { value = true }; };
      |                                        ^
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:62:40: warning: ignoring attributes on template argument '__m128d' [-Wignored-attributes]
   62 | template<> struct is_arithmetic<__m128d> { enum { value = true }; };
      |                                        ^
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:161:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__m128'} [-Wignored-attributes]
  161 | template<> struct unpacket_traits<Packet4f> { typedef float  type; enum {size=4, alignment=Aligned16}; typedef Packet4f half; };
      |                                           ^
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:162:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__m128d'} [-Wignored-attributes]
  162 | template<> struct unpacket_traits<Packet2d> { typedef double type; enum {size=2, alignment=Aligned16}; typedef Packet2d half; };
      |                                           ^
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:163:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet4i' {aka '__m128i'} [-Wignored-attributes]
  163 | template<> struct unpacket_traits<Packet4i> { typedef int    type; enum {size=4, alignment=Aligned16}; typedef Packet4i half; };
      |                                           ^
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:718:35: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__m128'} [-Wignored-attributes]
  718 | struct palign_impl<Offset,Packet4f>
      |                                   ^
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:741:35: warning: ignoring attributes on template argument 'Eigen::internal::Packet4i' {aka '__m128i'} [-Wignored-attributes]
  741 | struct palign_impl<Offset,Packet4i>
      |                                   ^
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:764:35: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__m128d'} [-Wignored-attributes]
  764 | struct palign_impl<Offset,Packet2d>
      |                                   ^
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:778:34: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__m128'} [-Wignored-attributes]
  778 | ptranspose(PacketBlock<Packet4f,4>& kernel) {
      |                                  ^
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:783:34: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__m128d'} [-Wignored-attributes]
  783 | ptranspose(PacketBlock<Packet2d,2>& kernel) {
      |                                  ^
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:790:34: warning: ignoring attributes on template argument 'Eigen::internal::Packet4i' {aka '__m128i'} [-Wignored-attributes]
  790 | ptranspose(PacketBlock<Packet4i,4>& kernel) {
      |                                  ^
In file included from F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/Core:377:
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:15:70: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__m128'} [-Wignored-attributes]
   15 |   template<> struct conj_helper<PACKET_REAL, PACKET_CPLX, false,false> {                                          \
      |                                                                      ^
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:232:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL'
  232 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f)
      | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:22:70: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__m128'} [-Wignored-attributes]
   22 |   template<> struct conj_helper<PACKET_CPLX, PACKET_REAL, false,false> {                                          \
      |                                                                      ^
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:232:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL'
  232 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f)
      | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:15:70: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__m128d'} [-Wignored-attributes]
   15 |   template<> struct conj_helper<PACKET_REAL, PACKET_CPLX, false,false> {                                          \
      |                                                                      ^
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:417:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL'
  417 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d)
      | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:22:70: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__m128d'} [-Wignored-attributes]
   22 |   template<> struct conj_helper<PACKET_CPLX, PACKET_REAL, false,false> {                                          \
      |                                                                      ^
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:417:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL'
  417 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d)
      | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/Core:370:
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<float, 4>':
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57:   required from 'struct Eigen::internal::traits<Eigen::Matrix<float, 4, 1> >'
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:243:49:   required from 'struct Eigen::internal::traits<Eigen::Quaternion<float> >'
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:24:46:   required from here
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<float>::type' {aka '__m128'} [-Wignored-attributes]
  187 |          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
      |                                       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<float>::type' {aka '__m128'} [-Wignored-attributes]
  187 |          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
      |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<float>::type' {aka '__m128'} [-Wignored-attributes]
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(4) float>::half' {aka '__m128'} [-Wignored-attributes]
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<float>::type' {aka '__m128'} [-Wignored-attributes]
  205 |   typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
      |                                                                                        ^~~~
In file included from F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/Core:439:
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Matrix<float, 4, 1>, 0>':
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<float, 4, 1>, 1>'
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<float, 4, 1>, 3>'
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::Matrix<float, 4, 1> >'
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from 'class Eigen::MatrixBase<Eigen::Matrix<float, 4, 1> >'
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from 'class Eigen::PlainObjectBase<Eigen::Matrix<float, 4, 1> >'
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   required from 'class Eigen::Matrix<float, 4, 1>'
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50:   required from 'class Eigen::QuaternionBase<Eigen::Quaternion<float> >'
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:250:7:   required from 'class Eigen::Quaternion<float>'
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:27:3:   required from here
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<float>::type' {aka '__m128'} [-Wignored-attributes]
   55 |                      >::type PacketReturnType;
      |                              ^~~~~~~~~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<double, 4>':
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57:   required from 'struct Eigen::internal::traits<Eigen::Matrix<double, 4, 1> >'
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:243:49:   required from 'struct Eigen::internal::traits<Eigen::Quaternion<double> >'
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:88:47:   required from here
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
  187 |          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
      |                                       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
  187 |          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
      |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
  205 |   typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
      |                                                                                        ^~~~
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 1>, 0>':
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 1>, 1>'
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 1>, 3>'
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::Matrix<double, 4, 1> >'
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from 'class Eigen::MatrixBase<Eigen::Matrix<double, 4, 1> >'
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from 'class Eigen::PlainObjectBase<Eigen::Matrix<double, 4, 1> >'
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   required from 'class Eigen::Matrix<double, 4, 1>'
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50:   required from 'class Eigen::QuaternionBase<Eigen::Quaternion<double> >'
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:250:7:   required from 'class Eigen::Quaternion<double>'
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:92:3:   required from here
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
   55 |                      >::type PacketReturnType;
      |                              ^~~~~~~~~~~~~~~~
In file included from F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/SparseCore:37,
                 from F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/Sparse:26,
                 from F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/RcppEigenForward.h:31:
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of 'class Eigen::SparseMatrixBase<Eigen::SparseMatrix<double, 0, int> >':
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7:   required from 'class Eigen::SparseCompressedBase<Eigen::SparseMatrix<double, 0, int> >'
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:96:7:   required from 'class Eigen::SparseMatrix<double, 0, int>'
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/ConstrainedConjGrad.h:61:25:   required from here
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
   47 |                      >::type PacketReturnType;
      |                              ^~~~~~~~~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<int, -1>':
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57:   required from 'struct Eigen::internal::traits<Eigen::Matrix<int, -1, 1> >'
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from 'class Eigen::PlainObjectBase<Eigen::Matrix<int, -1, 1> >'
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   required from 'class Eigen::Matrix<int, -1, 1>'
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:168:29:   required from here
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<int>::type' {aka '__m128i'} [-Wignored-attributes]
  187 |          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
      |                                       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<int>::type' {aka '__m128i'} [-Wignored-attributes]
  187 |          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
      |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<int>::type' {aka '__m128i'} [-Wignored-attributes]
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) long long int>::half' {aka '__m128i'} [-Wignored-attributes]
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<int>::type' {aka '__m128i'} [-Wignored-attributes]
  205 |   typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
      |                                                                                        ^~~~
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Matrix<int, -1, 1>, 0>':
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<int, -1, 1>, 1>'
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<int, -1, 1>, 3>'
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::Matrix<int, -1, 1> >'
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from 'class Eigen::MatrixBase<Eigen::Matrix<int, -1, 1> >'
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from 'class Eigen::PlainObjectBase<Eigen::Matrix<int, -1, 1> >'
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   required from 'class Eigen::Matrix<int, -1, 1>'
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:168:29:   required from here
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<int>::type' {aka '__m128i'} [-Wignored-attributes]
   55 |                      >::type PacketReturnType;
      |                              ^~~~~~~~~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Transpose<Eigen::Matrix<int, -1, 1> >, 0>':
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Transpose<Eigen::Matrix<int, -1, 1> >, 1>'
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Transpose<Eigen::Matrix<int, -1, 1> >, 3>'
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::Transpose<Eigen::Matrix<int, -1, 1> > >'
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from 'class Eigen::MatrixBase<Eigen::Transpose<Eigen::Matrix<int, -1, 1> > >'
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:115:37:   required from 'class Eigen::TransposeImpl<Eigen::Matrix<int, -1, 1>, Eigen::Dense>'
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37:   required from 'class Eigen::Transpose<Eigen::Matrix<int, -1, 1> >'
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:178:72:   required from here
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<int>::type' {aka '__m128i'} [-Wignored-attributes]
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Matrix<int, -1, -1>, 0>':
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<int, -1, -1>, 1>'
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<int, -1, -1>, 3>'
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::Matrix<int, -1, -1> >'
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from 'class Eigen::MatrixBase<Eigen::Matrix<int, -1, -1> >'
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from 'class Eigen::PlainObjectBase<Eigen::Matrix<int, -1, -1> >'
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   required from 'class Eigen::Matrix<int, -1, -1>'
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:179:36:   required from here
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<int>::type' {aka '__m128i'} [-Wignored-attributes]
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::SparseMatrix<double, 0, int>, 0>':
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:298:80:   required from 'struct Eigen::internal::evaluator<Eigen::SparseCompressedBase<Eigen::SparseMatrix<double, 0, int> > >'
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1391:8:   required from 'struct Eigen::internal::evaluator<Eigen::SparseMatrix<double, 0, int> >'
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseAssign.h:77:20:   required from 'void Eigen::internal::assign_sparse_to_sparse(DstXprType&, const SrcXprType&) [with DstXprType = Eigen::SparseMatrix<double, 0, int>; SrcXprType = Eigen::SparseMatrix<double, 0, int>]'
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseAssign.h:132:28:   required from 'static void Eigen::internal::Assignment<DstXprType, SrcXprType, Functor, Eigen::internal::Sparse2Sparse>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op<typename DstXprType::Scalar, typename SrcXprType::Scalar>&) [with DstXprType = Eigen::SparseMatrix<double, 0, int>; SrcXprType = Eigen::SparseMatrix<double, 0, int>; Functor = Eigen::internal::assign_op<double, double>; typename SrcXprType::Scalar = double; typename DstXprType::Scalar = double]'
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49:   required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::SparseMatrix<double, 0, int>; Src = Eigen::SparseMatrix<double, 0, int>; Func = assign_op<double, double>]'
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:842:27:   required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&) [with Dst = Eigen::SparseMatrix<double, 0, int>; Src = Eigen::SparseMatrix<double, 0, int>]'
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseAssign.h:45:37:   required from 'Derived& Eigen::SparseMatrixBase<Derived>::operator=(const Derived&) [with Derived = Eigen::SparseMatrix<double, 0, int>]'
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:774:26:   required from 'Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::operator=(const Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>&) [with _Scalar = double; int _Options = 0; _StorageIndex = int]'
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:709:13:   required from 'Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::SparseMatrix(const Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>&) [with _Scalar = double; int _Options = 0; _StorageIndex = int]'
RcppExports.cpp:27:48:   required from here
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Map<const Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> >, 0>':
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Map<const Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> >, 2>'
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::Map<const Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> > >'
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from 'class Eigen::MatrixBase<Eigen::Map<const Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> > >'
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from 'class Eigen::MapBase<Eigen::Map<const Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> >, 0>'
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/Map.h:94:79:   required from 'class Eigen::Map<const Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> >'
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:65:29:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/RcppEigenWrap.h:155:39:   required from 'SEXPREC* Rcpp::RcppEigen::eigen_wrap(const T&) [with T = Eigen::SparseMatrix<double, 0, int>; SEXP = SEXPREC*]'
F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include/Rcpp/internal/wrap.h:776:49:   required from 'SEXPREC* Rcpp::internal::wrap_dispatch_eigen(const T&, Rcpp::traits::true_type) [with T = Eigen::SparseMatrix<double, 0, int>; SEXP = SEXPREC*; Rcpp::traits::true_type = Rcpp::traits::integral_constant<bool, true>]'
F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include/Rcpp/internal/wrap.h:787:39:   required from 'SEXPREC* Rcpp::internal::wrap_dispatch_unknown_importable(const T&, Rcpp::traits::false_type) [with T = Eigen::SparseMatrix<double, 0, int>; SEXP = SEXPREC*; Rcpp::traits::false_type = Rcpp::traits::integral_constant<bool, false>]'
F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include/Rcpp/internal/wrap.h:807:52:   required from 'SEXPREC* Rcpp::internal::wrap_dispatch(const T&, Rcpp::traits::wrap_type_unknown_tag) [with T = Eigen::SparseMatrix<double, 0, int>; SEXP = SEXPREC*]'
F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include/Rcpp/internal/wrap_end.h:30:38:   required from 'SEXPREC* Rcpp::wrap(const T&) [with T = Eigen::SparseMatrix<double, 0, int>; SEXP = SEXPREC*]'
RcppExports.cpp:27:33:   required from here
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<int>::type' {aka '__m128i'} [-Wignored-attributes]
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase<Derived>&) [with Derived = Eigen::Map<const Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> >; Eigen::Index = long long int]':
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:225:63:   required from 'static Eigen::internal::redux_impl<Func, Derived, 3, 0>::Scalar Eigen::internal::redux_impl<Func, Derived, 3, 0>::run(const Derived&, const Func&) [with Func = Eigen::internal::scalar_sum_op<int, int>; Derived = Eigen::internal::redux_evaluator<Eigen::Map<const Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> > >; Scalar = int]'
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56:   required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op<int, int>; Derived = Eigen::Map<const Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> >; typename Eigen::internal::traits<T>::Scalar = int]'
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:453:25:   required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::sum() const [with Derived = Eigen::Map<const Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> >; typename Eigen::internal::traits<T>::Scalar = int]'
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:65:35:   required from 'Eigen::Index Eigen::SparseCompressedBase<Derived>::nonZeros() const [with Derived = Eigen::SparseMatrix<double, 0, int>; Eigen::Index = long long int]'
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/RcppEigenWrap.h:125:47:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/RcppEigenWrap.h:155:39:   required from 'SEXPREC* Rcpp::RcppEigen::eigen_wrap(const T&) [with T = Eigen::SparseMatrix<double, 0, int>; SEXP = SEXPREC*]'
F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include/Rcpp/internal/wrap.h:776:49:   required from 'SEXPREC* Rcpp::internal::wrap_dispatch_eigen(const T&, Rcpp::traits::true_type) [with T = Eigen::SparseMatrix<double, 0, int>; SEXP = SEXPREC*; Rcpp::traits::true_type = Rcpp::traits::integral_constant<bool, true>]'
F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include/Rcpp/internal/wrap.h:787:39:   required from 'SEXPREC* Rcpp::internal::wrap_dispatch_unknown_importable(const T&, Rcpp::traits::false_type) [with T = Eigen::SparseMatrix<double, 0, int>; SEXP = SEXPREC*; Rcpp::traits::false_type = Rcpp::traits::integral_constant<bool, false>]'
F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include/Rcpp/internal/wrap.h:807:52:   required from 'SEXPREC* Rcpp::internal::wrap_dispatch(const T&, Rcpp::traits::wrap_type_unknown_tag) [with T = Eigen::SparseMatrix<double, 0, int>; SEXP = SEXPREC*]'
F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include/Rcpp/internal/wrap_end.h:30:38:   required from 'SEXPREC* Rcpp::wrap(const T&) [with T = Eigen::SparseMatrix<double, 0, int>; SEXP = SEXPREC*]'
RcppExports.cpp:27:33:   required from here
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:650:74: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<int>::type' {aka '__m128i'} [-Wignored-attributes]
  650 |   return internal::first_aligned<int(unpacket_traits<DefaultPacketType>::alignment),Derived>(m);
      |                                                                          ^~~~~~~~~
g++  -std=gnu++11 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/grDevices/include'   -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include"  -ggdb   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c censoring.cpp -o censoring.o
In file included from F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/Core:397,
                 from F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from censoring.cpp:7:
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:60:39: warning: ignoring attributes on template argument '__m128' [-Wignored-attributes]
   60 | template<> struct is_arithmetic<__m128>  { enum { value = true }; };
      |                                       ^
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:61:40: warning: ignoring attributes on template argument '__m128i' [-Wignored-attributes]
   61 | template<> struct is_arithmetic<__m128i> { enum { value = true }; };
      |                                        ^
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:62:40: warning: ignoring attributes on template argument '__m128d' [-Wignored-attributes]
   62 | template<> struct is_arithmetic<__m128d> { enum { value = true }; };
      |                                        ^
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:161:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__m128'} [-Wignored-attributes]
  161 | template<> struct unpacket_traits<Packet4f> { typedef float  type; enum {size=4, alignment=Aligned16}; typedef Packet4f half; };
      |                                           ^
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:162:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__m128d'} [-Wignored-attributes]
  162 | template<> struct unpacket_traits<Packet2d> { typedef double type; enum {size=2, alignment=Aligned16}; typedef Packet2d half; };
      |                                           ^
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:163:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet4i' {aka '__m128i'} [-Wignored-attributes]
  163 | template<> struct unpacket_traits<Packet4i> { typedef int    type; enum {size=4, alignment=Aligned16}; typedef Packet4i half; };
      |                                           ^
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:718:35: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__m128'} [-Wignored-attributes]
  718 | struct palign_impl<Offset,Packet4f>
      |                                   ^
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:741:35: warning: ignoring attributes on template argument 'Eigen::internal::Packet4i' {aka '__m128i'} [-Wignored-attributes]
  741 | struct palign_impl<Offset,Packet4i>
      |                                   ^
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:764:35: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__m128d'} [-Wignored-attributes]
  764 | struct palign_impl<Offset,Packet2d>
      |                                   ^
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:778:34: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__m128'} [-Wignored-attributes]
  778 | ptranspose(PacketBlock<Packet4f,4>& kernel) {
      |                                  ^
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:783:34: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__m128d'} [-Wignored-attributes]
  783 | ptranspose(PacketBlock<Packet2d,2>& kernel) {
      |                                  ^
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:790:34: warning: ignoring attributes on template argument 'Eigen::internal::Packet4i' {aka '__m128i'} [-Wignored-attributes]
  790 | ptranspose(PacketBlock<Packet4i,4>& kernel) {
      |                                  ^
In file included from F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/Core:377:
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:15:70: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__m128'} [-Wignored-attributes]
   15 |   template<> struct conj_helper<PACKET_REAL, PACKET_CPLX, false,false> {                                          \
      |                                                                      ^
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:232:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL'
  232 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f)
      | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:22:70: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__m128'} [-Wignored-attributes]
   22 |   template<> struct conj_helper<PACKET_CPLX, PACKET_REAL, false,false> {                                          \
      |                                                                      ^
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:232:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL'
  232 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f)
      | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:15:70: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__m128d'} [-Wignored-attributes]
   15 |   template<> struct conj_helper<PACKET_REAL, PACKET_CPLX, false,false> {                                          \
      |                                                                      ^
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:417:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL'
  417 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d)
      | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:22:70: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__m128d'} [-Wignored-attributes]
   22 |   template<> struct conj_helper<PACKET_CPLX, PACKET_REAL, false,false> {                                          \
      |                                                                      ^
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:417:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL'
  417 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d)
      | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/Core:370:
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<float, 4>':
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57:   required from 'struct Eigen::internal::traits<Eigen::Matrix<float, 4, 1> >'
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:243:49:   required from 'struct Eigen::internal::traits<Eigen::Quaternion<float> >'
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:24:46:   required from here
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<float>::type' {aka '__m128'} [-Wignored-attributes]
  187 |          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
      |                                       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<float>::type' {aka '__m128'} [-Wignored-attributes]
  187 |          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
      |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<float>::type' {aka '__m128'} [-Wignored-attributes]
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(4) float>::half' {aka '__m128'} [-Wignored-attributes]
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<float>::type' {aka '__m128'} [-Wignored-attributes]
  205 |   typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
      |                                                                                        ^~~~
In file included from F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/Core:439:
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Matrix<float, 4, 1>, 0>':
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<float, 4, 1>, 1>'
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<float, 4, 1>, 3>'
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::Matrix<float, 4, 1> >'
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from 'class Eigen::MatrixBase<Eigen::Matrix<float, 4, 1> >'
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from 'class Eigen::PlainObjectBase<Eigen::Matrix<float, 4, 1> >'
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   required from 'class Eigen::Matrix<float, 4, 1>'
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50:   required from 'class Eigen::QuaternionBase<Eigen::Quaternion<float> >'
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:250:7:   required from 'class Eigen::Quaternion<float>'
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:27:3:   required from here
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<float>::type' {aka '__m128'} [-Wignored-attributes]
   55 |                      >::type PacketReturnType;
      |                              ^~~~~~~~~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<double, 4>':
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57:   required from 'struct Eigen::internal::traits<Eigen::Matrix<double, 4, 1> >'
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:243:49:   required from 'struct Eigen::internal::traits<Eigen::Quaternion<double> >'
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:88:47:   required from here
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
  187 |          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
      |                                       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
  187 |          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
      |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
  205 |   typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
      |                                                                                        ^~~~
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 1>, 0>':
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 1>, 1>'
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 1>, 3>'
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::Matrix<double, 4, 1> >'
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from 'class Eigen::MatrixBase<Eigen::Matrix<double, 4, 1> >'
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from 'class Eigen::PlainObjectBase<Eigen::Matrix<double, 4, 1> >'
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   required from 'class Eigen::Matrix<double, 4, 1>'
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50:   required from 'class Eigen::QuaternionBase<Eigen::Quaternion<double> >'
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:250:7:   required from 'class Eigen::Quaternion<double>'
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:92:3:   required from here
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
   55 |                      >::type PacketReturnType;
      |                              ^~~~~~~~~~~~~~~~
In file included from F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/SparseCore:37,
                 from F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/Sparse:26,
                 from F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/RcppEigenForward.h:31:
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of 'class Eigen::SparseMatrixBase<Eigen::SparseMatrix<double, 0, int> >':
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7:   required from 'class Eigen::SparseCompressedBase<Eigen::SparseMatrix<double, 0, int> >'
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:96:7:   required from 'class Eigen::SparseMatrix<double, 0, int>'
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/ConstrainedConjGrad.h:61:25:   required from here
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
   47 |                      >::type PacketReturnType;
      |                              ^~~~~~~~~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<int, -1>':
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57:   required from 'struct Eigen::internal::traits<Eigen::Matrix<int, -1, 1> >'
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from 'class Eigen::PlainObjectBase<Eigen::Matrix<int, -1, 1> >'
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   required from 'class Eigen::Matrix<int, -1, 1>'
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:168:29:   required from here
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<int>::type' {aka '__m128i'} [-Wignored-attributes]
  187 |          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
      |                                       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<int>::type' {aka '__m128i'} [-Wignored-attributes]
  187 |          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
      |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<int>::type' {aka '__m128i'} [-Wignored-attributes]
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) long long int>::half' {aka '__m128i'} [-Wignored-attributes]
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<int>::type' {aka '__m128i'} [-Wignored-attributes]
  205 |   typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
      |                                                                                        ^~~~
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Matrix<int, -1, 1>, 0>':
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<int, -1, 1>, 1>'
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<int, -1, 1>, 3>'
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::Matrix<int, -1, 1> >'
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from 'class Eigen::MatrixBase<Eigen::Matrix<int, -1, 1> >'
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from 'class Eigen::PlainObjectBase<Eigen::Matrix<int, -1, 1> >'
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   required from 'class Eigen::Matrix<int, -1, 1>'
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:168:29:   required from here
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<int>::type' {aka '__m128i'} [-Wignored-attributes]
   55 |                      >::type PacketReturnType;
      |                              ^~~~~~~~~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Transpose<Eigen::Matrix<int, -1, 1> >, 0>':
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Transpose<Eigen::Matrix<int, -1, 1> >, 1>'
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Transpose<Eigen::Matrix<int, -1, 1> >, 3>'
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::Transpose<Eigen::Matrix<int, -1, 1> > >'
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from 'class Eigen::MatrixBase<Eigen::Transpose<Eigen::Matrix<int, -1, 1> > >'
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:115:37:   required from 'class Eigen::TransposeImpl<Eigen::Matrix<int, -1, 1>, Eigen::Dense>'
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37:   required from 'class Eigen::Transpose<Eigen::Matrix<int, -1, 1> >'
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:178:72:   required from here
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<int>::type' {aka '__m128i'} [-Wignored-attributes]
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Matrix<int, -1, -1>, 0>':
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<int, -1, -1>, 1>'
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<int, -1, -1>, 3>'
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::Matrix<int, -1, -1> >'
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from 'class Eigen::MatrixBase<Eigen::Matrix<int, -1, -1> >'
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from 'class Eigen::PlainObjectBase<Eigen::Matrix<int, -1, -1> >'
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   required from 'class Eigen::Matrix<int, -1, -1>'
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:179:36:   required from here
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<int>::type' {aka '__m128i'} [-Wignored-attributes]
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Map<const Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> >, 0>':
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Map<const Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> >, 2>'
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::Map<const Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> > >'
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from 'class Eigen::MatrixBase<Eigen::Map<const Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> > >'
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from 'class Eigen::MapBase<Eigen::Map<const Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> >, 0>'
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/Map.h:94:79:   required from 'class Eigen::Map<const Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> >'
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:65:29:   required from 'Eigen::Index Eigen::SparseCompressedBase<Derived>::nonZeros() const [with Derived = Eigen::SparseMatrix<double, 0, int>; Eigen::Index = long long int]'
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:163:21:   required from 'Eigen::SparseCompressedBase<Derived>::InnerIterator::InnerIterator(const Eigen::SparseCompressedBase<Derived>&, Eigen::Index) [with Derived = Eigen::SparseMatrix<double, 0, int>; Eigen::Index = long long int]'
censoring.cpp:116:46:   required from here
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<int>::type' {aka '__m128i'} [-Wignored-attributes]
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase<Derived>&) [with Derived = Eigen::Map<const Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> >; Eigen::Index = long long int]':
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:225:63:   required from 'static Eigen::internal::redux_impl<Func, Derived, 3, 0>::Scalar Eigen::internal::redux_impl<Func, Derived, 3, 0>::run(const Derived&, const Func&) [with Func = Eigen::internal::scalar_sum_op<int, int>; Derived = Eigen::internal::redux_evaluator<Eigen::Map<const Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> > >; Scalar = int]'
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56:   required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op<int, int>; Derived = Eigen::Map<const Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> >; typename Eigen::internal::traits<T>::Scalar = int]'
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:453:25:   required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::sum() const [with Derived = Eigen::Map<const Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> >; typename Eigen::internal::traits<T>::Scalar = int]'
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:65:35:   required from 'Eigen::Index Eigen::SparseCompressedBase<Derived>::nonZeros() const [with Derived = Eigen::SparseMatrix<double, 0, int>; Eigen::Index = long long int]'
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:163:21:   required from 'Eigen::SparseCompressedBase<Derived>::InnerIterator::InnerIterator(const Eigen::SparseCompressedBase<Derived>&, Eigen::Index) [with Derived = Eigen::SparseMatrix<double, 0, int>; Eigen::Index = long long int]'
censoring.cpp:116:46:   required from here
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:650:74: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<int>::type' {aka '__m128i'} [-Wignored-attributes]
  650 |   return internal::first_aligned<int(unpacket_traits<DefaultPacketType>::alignment),Derived>(m);
      |                                                                          ^~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::SparseMatrix<double, 0, int>, 0>':
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:298:80:   required from 'struct Eigen::internal::evaluator<Eigen::SparseCompressedBase<Eigen::SparseMatrix<double, 0, int> > >'
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1391:8:   required from 'struct Eigen::internal::evaluator<Eigen::SparseMatrix<double, 0, int> >'
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseAssign.h:77:20:   required from 'void Eigen::internal::assign_sparse_to_sparse(DstXprType&, const SrcXprType&) [with DstXprType = Eigen::SparseMatrix<double, 0, int>; SrcXprType = Eigen::SparseMatrix<double, 0, int>]'
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseAssign.h:132:28:   required from 'static void Eigen::internal::Assignment<DstXprType, SrcXprType, Functor, Eigen::internal::Sparse2Sparse>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op<typename DstXprType::Scalar, typename SrcXprType::Scalar>&) [with DstXprType = Eigen::SparseMatrix<double, 0, int>; SrcXprType = Eigen::SparseMatrix<double, 0, int>; Functor = Eigen::internal::assign_op<double, double>; typename SrcXprType::Scalar = double; typename DstXprType::Scalar = double]'
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49:   required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::SparseMatrix<double, 0, int>; Src = Eigen::SparseMatrix<double, 0, int>; Func = assign_op<double, double>]'
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:842:27:   required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&) [with Dst = Eigen::SparseMatrix<double, 0, int>; Src = Eigen::SparseMatrix<double, 0, int>]'
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseAssign.h:45:37:   required from 'Derived& Eigen::SparseMatrixBase<Derived>::operator=(const Derived&) [with Derived = Eigen::SparseMatrix<double, 0, int>]'
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:774:26:   required from 'Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::operator=(const Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>&) [with _Scalar = double; int _Options = 0; _StorageIndex = int]'
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:709:13:   required from 'Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::SparseMatrix(const Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>&) [with _Scalar = double; int _Options = 0; _StorageIndex = int]'
censoring.cpp:105:17:   required from here
F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
   55 |                      >::type PacketReturnType;
      |                              ^~~~~~~~~~~~~~~~
censoring.cpp: In function 'double censor_pair(double, double, double, double, double, double, double, double, double)':
censoring.cpp:72:39: warning: 'm1' may be used uninitialized [-Wmaybe-uninitialized]
   72 |                                 / sqrt(m1-m0);
      |                                   ~~~~^~~~~~~
censoring.cpp:55:36: note: 'm1' was declared here
   55 |                         double m0, m1;
      |                                    ^~
censoring.cpp:72:39: warning: 'm0' may be used uninitialized [-Wmaybe-uninitialized]
   72 |                                 / sqrt(m1-m0);
      |                                   ~~~~^~~~~~~
censoring.cpp:55:32: note: 'm0' was declared here
   55 |                         double m0, m1;
      |                                ^~
censoring.cpp:66:48: warning: 'use_d' may be used uninitialized [-Wmaybe-uninitialized]
   66 |                         const double v = use_d ? d : c;
      |                                          ~~~~~~^~~~~~~
censoring.cpp:18:14: note: 'use_d' was declared here
   18 |         bool use_d;
      |              ^~~~~
g++  -std=gnu++11 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/grDevices/include'   -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include"  -ggdb   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c utils.cpp -o utils.o
g++ -shared -s -static-libgcc -o destiny.dll tmp.def RcppExports.o censoring.o utils.o -Lc:/rtools42/x86_64-w64-mingw32.static.posix/lib/x64 -Lc:/rtools42/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.17-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.17-bioc/R/library/00LOCK-destiny/00new/destiny/libs/x64
** R
** data
** demo
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (destiny)


R Under development (unstable) (2022-12-25 r83502 ucrt) -- "Unsuffered Consequences"
Copyright (C) 2022 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(destiny)
> 
> test_check('destiny')
[ FAIL 0 | WARN 2 | SKIP 1 | PASS 67 ]

══ Skipped tests ═══════════════════════════════════════════════════════════════
• Not yet stable (1)

[ FAIL 0 | WARN 2 | SKIP 1 | PASS 67 ]
> 
> proc.time()
   user  system elapsed 
  10.90    1.60   12.48

name	user	system	elapsed
DPT-matrix-methods	1.16	0.02	1.18
DPT-methods	1.28	0.06	1.34
DPT	0.54	0.05	0.59
DiffusionMap-accessors	0.32	0.00	0.31
DiffusionMap-class	2.21	0.03	2.25
DiffusionMap-methods	0.25	0.00	0.25
ExpressionSet-helpers	0.07	0.01	0.08
Gene-Relevance-methods	0.92	0.08	1.00
Gene-Relevance-plotting	4.40	0.05	4.45
Gene-Relevance	1.72	0.01	1.74
Sigmas-class	0.11	0.02	0.12
coercions	0.25	0.02	0.27
colorlegend	0	0	0
cube_helix	0.01	0.00	0.02
destiny-generics	0.35	0.01	0.36
destiny	9.39	0.03	9.42
dm_predict	0.34	0.00	0.34
eig_decomp	0	0	0
extractions	0.50	0.03	0.54
find_dm_k	0.02	0.00	0.01
find_sigmas	0.33	0.02	0.35
find_tips	0.26	0.00	0.26
l_which	0	0	0
plot.DPT	1.35	0.03	1.37
plot.DiffusionMap	0.37	0.02	0.39
plot.Sigmas	0.63	0.00	0.63
projection_dist	0.15	0.00	0.15
random_root	0.22	0.01	0.24

CHECK results for destiny on palomino5

Summary

Command output

Installation output

Tests output

Example timings