| Back to Build/check report for BioC 3.17 |
|
This page was generated on 2023-01-02 09:00:26 -0500 (Mon, 02 Jan 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| palomino5 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2022-12-25 r83502 ucrt) -- "Unsuffered Consequences" | 4165 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the deepSNV package: Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 486/2158 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| deepSNV 1.45.0 (landing page) Moritz Gerstung
| palomino5 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | ||||||||
| Package: deepSNV |
| Version: 1.45.0 |
| Command: rm -rf deepSNV.buildbin-libdir && mkdir deepSNV.buildbin-libdir && F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL --build --library=deepSNV.buildbin-libdir deepSNV_1.45.0.tar.gz |
| StartedAt: 2022-12-29 05:02:58 -0500 (Thu, 29 Dec 2022) |
| EndedAt: 2022-12-29 05:03:52 -0500 (Thu, 29 Dec 2022) |
| EllapsedTime: 53.4 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: deepSNV_1.45.0.zip |
| PackageFileSize: 6.743 MiB |
##############################################################################
##############################################################################
###
### Running command:
###
### rm -rf deepSNV.buildbin-libdir && mkdir deepSNV.buildbin-libdir && F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL --build --library=deepSNV.buildbin-libdir deepSNV_1.45.0.tar.gz
###
##############################################################################
##############################################################################
* installing *source* package 'deepSNV' ...
** using staged installation
** libs
using C compiler: 'gcc.exe (GCC) 12.2.0'
using C++ compiler: 'G__~1.EXE (GCC) 12.2.0'
g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rhtslib/include' -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c bam2R.cpp -o bam2R.o
gcc -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rhtslib/include' -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c betabinom.c -o betabinom.o
betabinom.c: In function 'pbb':
betabinom.c:27:16: warning: unused variable 'log' [-Wunused-variable]
27 | int i, log=0;
| ^~~
g++ -std=gnu++11 -shared -s -static-libgcc -o deepSNV.dll tmp.def bam2R.o betabinom.o F:/biocbuild/bbs-3.17-bioc/R/library/Rhtslib/usrlib/x64/libhts.a -lz -lm -lbz2 -llzma -lcurl -lidn2 -lunistring -liconv -lssl -lcrypto -lcrypt32 -lwsock32 -lwldap32 -lssh2 -lgcrypt -lgpg-error -lws2_32 -lzstd -lregex -Lc:/rtools42/x86_64-w64-mingw32.static.posix/lib/x64 -Lc:/rtools42/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.17-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.17-bioc-rtools43/meat/deepSNV.buildbin-libdir/00LOCK-deepSNV/00new/deepSNV/libs/x64
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'deepSNV' as deepSNV_1.45.0.zip
* DONE (deepSNV)