Back to Build/check report for BioC 3.17 |
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This page was generated on 2023-01-02 09:00:25 -0500 (Mon, 02 Jan 2023).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
palomino5 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2022-12-25 r83502 ucrt) -- "Unsuffered Consequences" | 4165 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the ctc package: Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 442/2158 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
ctc 1.73.0 (landing page) Antoine Lucas
| palomino5 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | ||||||||
Package: ctc |
Version: 1.73.0 |
Command: F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:ctc.install-out.txt --library=F:\biocbuild\bbs-3.17-bioc\R\library --no-vignettes --timings ctc_1.73.0.tar.gz |
StartedAt: 2022-12-28 22:54:40 -0500 (Wed, 28 Dec 2022) |
EndedAt: 2022-12-28 22:55:09 -0500 (Wed, 28 Dec 2022) |
EllapsedTime: 29.0 seconds |
RetCode: 0 |
Status: OK |
CheckDir: ctc.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:ctc.install-out.txt --library=F:\biocbuild\bbs-3.17-bioc\R\library --no-vignettes --timings ctc_1.73.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'F:/biocbuild/bbs-3.17-bioc-rtools43/meat/ctc.Rcheck' * using R Under development (unstable) (2022-12-25 r83502 ucrt) * using platform: x86_64-w64-mingw32 (64-bit) * R was compiled by gcc.exe (GCC) 10.4.0 GNU Fortran (GCC) 10.4.0 * running under: Windows Server x64 (build 20348) * using session charset: UTF-8 * using option '--no-vignettes' * checking for file 'ctc/DESCRIPTION' ... OK * this is package 'ctc' version '1.73.0' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'ctc' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... NOTE Malformed Title field: should not end in a period. Malformed Description field: should contain one or more complete sentences. * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... NOTE 'library' or 'require' call to 'amap' which was already attached by Depends. Please remove these calls from your code. Package in Depends field not imported from: 'amap' These packages need to be imported from (in the NAMESPACE file) for when this namespace is loaded but not attached. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE .First.lib: warning in .packages(all = TRUE): partial argument match of 'all' to 'all.available' .onLoad: warning in .packages(all = TRUE): partial argument match of 'all' to 'all.available' hclust2treeview: warning in .packages(all = TRUE): partial argument match of 'all' to 'all.available' hclust2treeview: no visible global function definition for 'hclust' hclust2treeview: no visible global function definition for 'dist' r2atr: no visible global function definition for 'write.table' r2cdt: no visible global function definition for 'write.table' r2cluster: no visible global function definition for 'write.table' r2gtr: no visible global function definition for 'write.table' r2xcluster: no visible global function definition for 'write.table' read.eisen: no visible global function definition for 'read.table' xcluster2r: no visible global function definition for 'read.table' Undefined global functions or variables: dist hclust read.table write.table Consider adding importFrom("stats", "dist", "hclust") importFrom("utils", "read.table", "write.table") to your NAMESPACE file. * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking sizes of PDF files under 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 3 NOTEs See 'F:/biocbuild/bbs-3.17-bioc-rtools43/meat/ctc.Rcheck/00check.log' for details.
ctc.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL ctc ### ############################################################################## ############################################################################## * installing to library 'F:/biocbuild/bbs-3.17-bioc/R/library' * installing *source* package 'ctc' ... ** using staged installation ** R ** demo ** exec ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ctc)
ctc.Rcheck/ctc-Ex.timings
name | user | system | elapsed | |
hc2Newick | 0.02 | 0.00 | 0.03 | |
hclust2treeview | 0.04 | 0.18 | 0.23 | |
r2cluster | 0 | 0 | 0 | |
r2gtr | 0.01 | 0.00 | 0.01 | |
r2xcluster | 0 | 0 | 0 | |
xcluster | 0 | 0 | 0 | |
xcluster2r | 0 | 0 | 0 | |