Back to Build/check report for BioC 3.17 |
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This page was generated on 2023-01-02 09:00:22 -0500 (Mon, 02 Jan 2023).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
palomino5 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2022-12-25 r83502 ucrt) -- "Unsuffered Consequences" | 4165 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the categoryCompare package: Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 254/2158 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
categoryCompare 1.43.0 (landing page) Robert M. Flight
| palomino5 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | ||||||||
Package: categoryCompare |
Version: 1.43.0 |
Command: F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:categoryCompare.install-out.txt --library=F:\biocbuild\bbs-3.17-bioc\R\library --no-vignettes --timings categoryCompare_1.43.0.tar.gz |
StartedAt: 2022-12-28 22:16:25 -0500 (Wed, 28 Dec 2022) |
EndedAt: 2022-12-28 22:19:13 -0500 (Wed, 28 Dec 2022) |
EllapsedTime: 167.3 seconds |
RetCode: 0 |
Status: OK |
CheckDir: categoryCompare.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:categoryCompare.install-out.txt --library=F:\biocbuild\bbs-3.17-bioc\R\library --no-vignettes --timings categoryCompare_1.43.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'F:/biocbuild/bbs-3.17-bioc-rtools43/meat/categoryCompare.Rcheck' * using R Under development (unstable) (2022-12-25 r83502 ucrt) * using platform: x86_64-w64-mingw32 (64-bit) * R was compiled by gcc.exe (GCC) 10.4.0 GNU Fortran (GCC) 10.4.0 * running under: Windows Server x64 (build 20348) * using session charset: UTF-8 * using option '--no-vignettes' * checking for file 'categoryCompare/DESCRIPTION' ... OK * this is package 'categoryCompare' version '1.43.0' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'categoryCompare' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE .ccCompareGO: no visible binding for global variable 'GOBPPARENTS' .ccCompareGO: no visible binding for global variable 'GOMFPARENTS' .ccCompareGO: no visible binding for global variable 'GOCCPARENTS' .ccCompareGO: no visible binding for global variable 'GOTERM' .ccCompareGO: no visible binding for global variable 'Term' .cytOutNodes: ... may be used in an incorrect context: exportImage(filename = fileName, type = "png", network = cwObj, ...) .getDesc : <anonymous>: no visible global function definition for 'Term' show,HyperGResultCC: no visible global function definition for 'description' Undefined global functions or variables: GOBPPARENTS GOCCPARENTS GOMFPARENTS GOTERM Term description * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in 'vignettes' ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See 'F:/biocbuild/bbs-3.17-bioc-rtools43/meat/categoryCompare.Rcheck/00check.log' for details.
categoryCompare.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL categoryCompare ### ############################################################################## ############################################################################## * installing to library 'F:/biocbuild/bbs-3.17-bioc/R/library' * installing *source* package 'categoryCompare' ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading Note: ... may be used in an incorrect context ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (categoryCompare)
categoryCompare.Rcheck/categoryCompare-Ex.timings
name | user | system | elapsed | |
GENccEnrichResult-class | 0.32 | 0.02 | 0.35 | |
HyperGParamsCC-class | 0 | 0 | 0 | |
HyperGResultCC-class | 0 | 0 | 0 | |
breakEdges-methods | 0.39 | 0.00 | 0.39 | |
ccCompare | 0.39 | 0.00 | 0.39 | |
ccCompareCollection-class | 0 | 0 | 0 | |
ccCompareResult-class | 0 | 0 | 0 | |
ccData | 0.38 | 0.00 | 0.38 | |
ccEnrich | 0.34 | 0.01 | 0.36 | |
ccEnrichCollection-class | 1.14 | 0.07 | 1.23 | |
ccEnrichResult-class | 1.75 | 0.03 | 1.78 | |
ccGeneList-class | 0.45 | 0.00 | 0.46 | |
ccOptions-class | 0.02 | 0.00 | 0.01 | |
ccOutCyt-methods | 0 | 0 | 0 | |
ccSigList-class | 0 | 0 | 0 | |
cytOutData-methods | 0 | 0 | 0 | |
cytOutNodes-methods | 0 | 0 | 0 | |
hyperGTestCC | 0.7 | 0.0 | 0.7 | |
mergeLists-methods | 0.53 | 0.05 | 0.58 | |
mergedData-class | 0.46 | 0.02 | 0.47 | |
minCount | 0.95 | 0.01 | 0.97 | |
minNodes | 0 | 0 | 0 | |
pvalueType | 1.62 | 0.00 | 1.62 | |
show-methods | 0 | 0 | 0 | |