Back to Build/check report for BioC 3.17 |
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This page was generated on 2023-01-02 09:00:55 -0500 (Mon, 02 Jan 2023).
Hostname | OS | Arch (*) | R version | Installed pkgs |
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palomino5 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2022-12-25 r83502 ucrt) -- "Unsuffered Consequences" | 4165 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the VegaMC package: Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 2117/2158 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
VegaMC 3.37.0 (landing page) Sandro Morganella
| palomino5 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | ||||||||
Package: VegaMC |
Version: 3.37.0 |
Command: F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL VegaMC |
StartedAt: 2022-12-28 15:50:29 -0500 (Wed, 28 Dec 2022) |
EndedAt: 2022-12-28 15:50:47 -0500 (Wed, 28 Dec 2022) |
EllapsedTime: 18.5 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL VegaMC ### ############################################################################## ############################################################################## * installing to library 'F:/biocbuild/bbs-3.17-bioc/R/library' * installing *source* package 'VegaMC' ... ** using staged installation ** libs using C compiler: 'gcc.exe (GCC) 12.2.0' gcc -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c run_vegaMC.c -o run_vegaMC.o run_vegaMC.c: In function 'read_params': run_vegaMC.c:618:18: warning: unused variable 'brkt' [-Wunused-variable] 618 | char *elem, *brkt; | ^~~~ run_vegaMC.c: In function 'load_data': run_vegaMC.c:534:32: warning: 'chr' may be used uninitialized [-Wmaybe-uninitialized] 534 | temp_probe->chromosome = chr; | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~ run_vegaMC.c:498:30: note: 'chr' was declared here 498 | int i = 0, position, chr; | ^~~ run_vegaMC.c:535:30: warning: 'position' may be used uninitialized [-Wmaybe-uninitialized] 535 | temp_probe->position = position; | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ run_vegaMC.c:498:20: note: 'position' was declared here 498 | int i = 0, position, chr; | ^~~~~~~~ run_vegaMC.c:564:14: warning: 'first_probe' may be used uninitialized [-Wmaybe-uninitialized] 564 | prev_chr = temp_probe->chromosome; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ run_vegaMC.c:481:12: note: 'first_probe' was declared here 481 | probe *first_probe, *prev_probe, *temp_probe; | ^~~~~~~~~~~ run_vegaMC.c: In function 'call_VegaMC': run_vegaMC.c:469:13: warning: 'first_seg' may be used uninitialized [-Wmaybe-uninitialized] 469 | tmp = tmp->next; | ~~~~^~~~~~~~~~~ run_vegaMC.c:373:18: note: 'first_seg' was declared here 373 | seg_element *first_seg, *prev_seg; | ^~~~~~~~~ run_vegaMC.c:435:32: warning: 'prev_seg' may be used uninitialized [-Wmaybe-uninitialized] 435 | prev_seg->next = tmp; | ~~~~~~~~~~~~~~~^~~~~ run_vegaMC.c:373:30: note: 'prev_seg' was declared here 373 | seg_element *first_seg, *prev_seg; | ^~~~~~~~ gcc -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c sort_data.c -o sort_data.o gcc -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c vegaMC.c -o vegaMC.o vegaMC.c: In function 'heap_delete': vegaMC.c:235:10: warning: variable 'deleted' set but not used [-Wunused-but-set-variable] 235 | node deleted; | ^~~~~~~ vegaMC.c: In function 'init_trivial_segmentation': vegaMC.c:592:15: warning: variable 'index' set but not used [-Wunused-but-set-variable] 592 | int i, j, index; | ^~~~~ gcc -shared -s -static-libgcc -o VegaMC.dll tmp.def run_vegaMC.o sort_data.o vegaMC.o -Lc:/rtools42/x86_64-w64-mingw32.static.posix/lib/x64 -Lc:/rtools42/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.17-bioc/R/bin/x64 -lR installing to F:/biocbuild/bbs-3.17-bioc/R/library/00LOCK-VegaMC/00new/VegaMC/libs/x64 ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (VegaMC)