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This page was generated on 2023-01-02 09:00:55 -0500 (Mon, 02 Jan 2023).

HostnameOSArch (*)R versionInstalled pkgs
palomino5Windows Server 2022 Datacenterx64R Under development (unstable) (2022-12-25 r83502 ucrt) -- "Unsuffered Consequences" 4165
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INSTALL results for VegaMC on palomino5


To the developers/maintainers of the VegaMC package:
Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 2117/2158HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
VegaMC 3.37.0  (landing page)
Sandro Morganella
Snapshot Date: 2022-12-28 11:00:06 -0500 (Wed, 28 Dec 2022)
git_url: https://git.bioconductor.org/packages/VegaMC
git_branch: master
git_last_commit: 21bc41d
git_last_commit_date: 2022-11-01 11:06:49 -0500 (Tue, 01 Nov 2022)
palomino5Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  

Summary

Package: VegaMC
Version: 3.37.0
Command: F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL VegaMC
StartedAt: 2022-12-28 15:50:29 -0500 (Wed, 28 Dec 2022)
EndedAt: 2022-12-28 15:50:47 -0500 (Wed, 28 Dec 2022)
EllapsedTime: 18.5 seconds
RetCode: 0
Status:   OK  

Command output

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### Running command:
###
###   F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL VegaMC
###
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* installing to library 'F:/biocbuild/bbs-3.17-bioc/R/library'
* installing *source* package 'VegaMC' ...
** using staged installation
** libs
using C compiler: 'gcc.exe (GCC) 12.2.0'
gcc  -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG     -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c run_vegaMC.c -o run_vegaMC.o
run_vegaMC.c: In function 'read_params':
run_vegaMC.c:618:18: warning: unused variable 'brkt' [-Wunused-variable]
  618 |     char *elem, *brkt;
      |                  ^~~~
run_vegaMC.c: In function 'load_data':
run_vegaMC.c:534:32: warning: 'chr' may be used uninitialized [-Wmaybe-uninitialized]
  534 |         temp_probe->chromosome = chr;
      |         ~~~~~~~~~~~~~~~~~~~~~~~^~~~~
run_vegaMC.c:498:30: note: 'chr' was declared here
  498 |         int i = 0, position, chr;
      |                              ^~~
run_vegaMC.c:535:30: warning: 'position' may be used uninitialized [-Wmaybe-uninitialized]
  535 |         temp_probe->position = position;
      |         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
run_vegaMC.c:498:20: note: 'position' was declared here
  498 |         int i = 0, position, chr;
      |                    ^~~~~~~~
run_vegaMC.c:564:14: warning: 'first_probe' may be used uninitialized [-Wmaybe-uninitialized]
  564 |     prev_chr = temp_probe->chromosome;
      |     ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
run_vegaMC.c:481:12: note: 'first_probe' was declared here
  481 |     probe *first_probe, *prev_probe, *temp_probe;
      |            ^~~~~~~~~~~
run_vegaMC.c: In function 'call_VegaMC':
run_vegaMC.c:469:13: warning: 'first_seg' may be used uninitialized [-Wmaybe-uninitialized]
  469 |         tmp = tmp->next;
      |         ~~~~^~~~~~~~~~~
run_vegaMC.c:373:18: note: 'first_seg' was declared here
  373 |     seg_element *first_seg, *prev_seg;
      |                  ^~~~~~~~~
run_vegaMC.c:435:32: warning: 'prev_seg' may be used uninitialized [-Wmaybe-uninitialized]
  435 |                 prev_seg->next = tmp;
      |                 ~~~~~~~~~~~~~~~^~~~~
run_vegaMC.c:373:30: note: 'prev_seg' was declared here
  373 |     seg_element *first_seg, *prev_seg;
      |                              ^~~~~~~~
gcc  -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG     -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c sort_data.c -o sort_data.o
gcc  -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG     -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c vegaMC.c -o vegaMC.o
vegaMC.c: In function 'heap_delete':
vegaMC.c:235:10: warning: variable 'deleted' set but not used [-Wunused-but-set-variable]
  235 |     node deleted;
      |          ^~~~~~~
vegaMC.c: In function 'init_trivial_segmentation':
vegaMC.c:592:15: warning: variable 'index' set but not used [-Wunused-but-set-variable]
  592 |     int i, j, index;
      |               ^~~~~
gcc -shared -s -static-libgcc -o VegaMC.dll tmp.def run_vegaMC.o sort_data.o vegaMC.o -Lc:/rtools42/x86_64-w64-mingw32.static.posix/lib/x64 -Lc:/rtools42/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.17-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.17-bioc/R/library/00LOCK-VegaMC/00new/VegaMC/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (VegaMC)