Back to Build/check report for BioC 3.17 |
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This page was generated on 2023-01-02 09:00:52 -0500 (Mon, 02 Jan 2023).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
palomino5 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2022-12-25 r83502 ucrt) -- "Unsuffered Consequences" | 4165 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the SpidermiR package: Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1921/2158 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
SpidermiR 1.29.0 (landing page) Claudia Cava
| palomino5 | Windows Server 2022 Datacenter / x64 | OK | OK | ERROR | OK | ||||||||
Package: SpidermiR |
Version: 1.29.0 |
Command: F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:SpidermiR.install-out.txt --library=F:\biocbuild\bbs-3.17-bioc\R\library --no-vignettes --timings SpidermiR_1.29.0.tar.gz |
StartedAt: 2022-12-29 03:50:33 -0500 (Thu, 29 Dec 2022) |
EndedAt: 2022-12-29 04:02:01 -0500 (Thu, 29 Dec 2022) |
EllapsedTime: 687.6 seconds |
RetCode: 1 |
Status: ERROR |
CheckDir: SpidermiR.Rcheck |
Warnings: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:SpidermiR.install-out.txt --library=F:\biocbuild\bbs-3.17-bioc\R\library --no-vignettes --timings SpidermiR_1.29.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'F:/biocbuild/bbs-3.17-bioc-rtools43/meat/SpidermiR.Rcheck' * using R Under development (unstable) (2022-12-25 r83502 ucrt) * using platform: x86_64-w64-mingw32 (64-bit) * R was compiled by gcc.exe (GCC) 10.4.0 GNU Fortran (GCC) 10.4.0 * running under: Windows Server x64 (build 20348) * using session charset: UTF-8 * using option '--no-vignettes' * checking for file 'SpidermiR/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'SpidermiR' version '1.29.0' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'SpidermiR' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... NOTE Namespace in Imports field not imported from: 'gdata' All declared Imports should be used. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking examples ... ERROR Running examples in 'SpidermiR-Ex.R' failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: SpidermiRdownload_drug_gene > ### Title: Download drug-gene interactions in DGIdb > ### Aliases: SpidermiRdownload_drug_gene > > ### ** Examples > > drug_genetarget<-SpidermiRdownload_drug_gene(drug_gene) Warning in file(file, "rt") : URL 'https://www.dgidb.org/data/monthly_tsvs/2020-Sep/interactions.tsv': Timeout of 600 seconds was reached Error in file(file, "rt") : cannot open the connection to 'https://www.dgidb.org/data/monthly_tsvs/2020-Sep/interactions.tsv' Calls: SpidermiRdownload_drug_gene -> read.delim -> read.table -> file Execution halted * checking PDF version of manual ... OK * DONE Status: 1 ERROR, 1 NOTE See 'F:/biocbuild/bbs-3.17-bioc-rtools43/meat/SpidermiR.Rcheck/00check.log' for details.
SpidermiR.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL SpidermiR ### ############################################################################## ############################################################################## * installing to library 'F:/biocbuild/bbs-3.17-bioc/R/library' * installing *source* package 'SpidermiR' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SpidermiR)
SpidermiR.Rcheck/SpidermiR-Ex.timings
name | user | system | elapsed | |
SpidermiRanalyze_degree_centrality | 0 | 0 | 0 | |
SpidermiRanalyze_direct_net | 0 | 0 | 0 | |
SpidermiRanalyze_direct_subnetwork | 0 | 0 | 0 | |
SpidermiRanalyze_subnetwork_neigh | 0 | 0 | 0 | |