This page was generated on 2023-01-02 09:00:51 -0500 (Mon, 02 Jan 2023).
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### Running command:
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### F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL SingleR
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* installing to library 'F:/biocbuild/bbs-3.17-bioc/R/library'
* installing *source* package 'SingleR' ...
** using staged installation
** libs
using C++ compiler: 'G__~1.EXE (GCC) 12.2.0'
using C++17
g++ -std=gnu++17 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I../inst/include/ -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/BiocNeighbors/include' -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I../inst/include/ -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/BiocNeighbors/include' -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c find_classic_markers.cpp -o find_classic_markers.o
In file included from F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/stats/sums.hpp:5,
from F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/tatami.h:19,
from F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/tatami.hpp:4,
from F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/utils.hpp:15,
from F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/SimpleMatrix.hpp:4,
from F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/raticate.hpp:5,
from utils.h:13,
from find_classic_markers.cpp:2:
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/stats/apply.hpp:220: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
220 | #pragma omp parallel
|
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/stats/apply.hpp:234: warning: ignoring '#pragma omp for' [-Wunknown-pragmas]
234 | #pragma omp for schedule(static)
|
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/stats/apply.hpp:267: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
267 | #pragma omp parallel
|
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/stats/apply.hpp:278: warning: ignoring '#pragma omp for' [-Wunknown-pragmas]
278 | #pragma omp for schedule(static)
|
In file included from F:/biocbuild/bbs-3.17-bioc/R/library/BiocNeighbors/include/kmeans/Kmeans.hpp:5,
from F:/biocbuild/bbs-3.17-bioc/R/library/BiocNeighbors/include/knncolle/Kmknn/Kmknn.hpp:7,
from F:/biocbuild/bbs-3.17-bioc/R/library/BiocNeighbors/include/knncolle/knncolle.hpp:8,
from ../inst/include/singlepp/build_indices.hpp:8,
from ../inst/include/singlepp/BasicBuilder.hpp:5,
from ../inst/include/singlepp/Classifier.hpp:5,
from ../inst/include/singlepp/singlepp.hpp:10,
from utils.h:24:
F:/biocbuild/bbs-3.17-bioc/R/library/BiocNeighbors/include/kmeans/HartiganWong.hpp:163: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
163 | #pragma omp parallel for
|
In file included from F:/biocbuild/bbs-3.17-bioc/R/library/BiocNeighbors/include/kmeans/Kmeans.hpp:6:
F:/biocbuild/bbs-3.17-bioc/R/library/BiocNeighbors/include/kmeans/InitializeKmeansPP.hpp:77: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
77 | #pragma omp parallel for
|
In file included from F:/biocbuild/bbs-3.17-bioc/R/library/BiocNeighbors/include/knncolle/knncolle.hpp:19:
F:/biocbuild/bbs-3.17-bioc/R/library/BiocNeighbors/include/knncolle/utils/find_nearest_neighbors.hpp:49: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
49 | #pragma omp parallel for
|
F:/biocbuild/bbs-3.17-bioc/R/library/BiocNeighbors/include/knncolle/utils/find_nearest_neighbors.hpp:92: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
92 | #pragma omp parallel for
|
In file included from ../inst/include/singlepp/annotate_cells.hpp:9,
from ../inst/include/singlepp/BasicScorer.hpp:5,
from ../inst/include/singlepp/Classifier.hpp:6:
../inst/include/singlepp/fine_tune.hpp: In function 'std::pair<int, double> singlepp::fill_labels_in_use(const std::vector<double>&, double, std::vector<int>&)':
../inst/include/singlepp/fine_tune.hpp:30:15: warning: comparison of integer expressions of different signedness: 'std::size_t' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
30 | if (i != best_label && next_score < val) {
| ~~^~~~~~~~~~~~~
../inst/include/singlepp/fine_tune.hpp: In function 'std::pair<int, double> singlepp::replace_labels_in_use(const std::vector<double>&, double, std::vector<int>&)':
../inst/include/singlepp/fine_tune.hpp:56:15: warning: comparison of integer expressions of different signedness: 'std::size_t' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
56 | if (i != best_index && next_score < val) {
| ~~^~~~~~~~~~~~~
In file included from ../inst/include/singlepp/IntegratedScorer.hpp:8,
from ../inst/include/singlepp/singlepp.hpp:12:
../inst/include/singlepp/IntegratedBuilder.hpp: In member function 'std::vector<singlepp::IntegratedReference> singlepp::IntegratedBuilder::finish()':
../inst/include/singlepp/IntegratedBuilder.hpp:438:36: warning: comparison of integer expressions of different signedness: 'const int' and 'std::size_t' {aka 'long long unsigned int'} [-Wsign-compare]
438 | if (it->second < first) {
| ~~~~~~~~~~~^~~~~~~
../inst/include/singlepp/IntegratedBuilder.hpp:441:36: warning: comparison of integer expressions of different signedness: 'const int' and 'std::size_t' {aka 'long long unsigned int'} [-Wsign-compare]
441 | if (it->second > last) {
| ~~~~~~~~~~~^~~~~~
find_classic_markers.cpp: In function 'Rcpp::List find_classic_markers(int, int, Rcpp::List, Rcpp::List, int, int)':
find_classic_markers.cpp:13:14: warning: comparison of integer expressions of different signedness: 'std::size_t' {aka 'long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare]
13 | if (nref != labels.size()) {
| ~~~~~^~~~~~~~~~~~~~~~
find_classic_markers.cpp:28:43: warning: comparison of integer expressions of different signedness: 'std::size_t' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
28 | if (ref_vec.back().matrix->nrow() != ngenes) {
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~
find_classic_markers.cpp:34:35: warning: comparison of integer expressions of different signedness: 'R_xlen_t' {aka 'long long int'} and 'std::size_t' {aka 'long long unsigned int'} [-Wsign-compare]
34 | if (lab_vec.back().size() != ref_vec.back().matrix->ncol()) {
| ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/BiocNeighbors/include/knncolle/Kmknn/Kmknn.hpp: In instantiation of 'knncolle::Kmknn<DISTANCE, INDEX_t, DISTANCE_t, QUERY_t, INTERNAL_t>::Kmknn(INDEX_t, INDEX_t, const INPUT_t*, double) [with INPUT_t = double; DISTANCE = knncolle::distances::Euclidean; INDEX_t = int; DISTANCE_t = double; QUERY_t = double; INTERNAL_t = double]':
../inst/include/singlepp/BasicBuilder.hpp:103:127: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/BiocNeighbors/include/knncolle/Kmknn/Kmknn.hpp:116:31: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
116 | for (INDEX_t i = 1; i < ncenters; ++i) {
| ~~^~~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/BiocNeighbors/include/knncolle/Kmknn/Kmknn.hpp:133:35: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
133 | for (INDEX_t c = 0; c < ncenters; ++c) {
| ~~^~~~~~~~~~
../inst/include/singlepp/fine_tune.hpp: In instantiation of 'std::pair<int, double> singlepp::FineTuner::run(singlepp::RankedVector<double, int>&, const std::vector<singlepp::Reference>&, const singlepp::Markers&, std::vector<double>&, double, double) [with bool test = false; singlepp::RankedVector<double, int> = std::vector<std::pair<double, int>, std::allocator<std::pair<double, int> > >; singlepp::Markers = std::vector<std::vector<std::vector<int> > >]':
../inst/include/singlepp/annotate_cells.hpp:120:36: required from here
../inst/include/singlepp/fine_tune.hpp:136:24: warning: unused variable 'NR' [-Wunused-variable]
136 | size_t NR = curref.index->ndim();
| ^~
In file included from ../inst/include/singlepp/singlepp.hpp:15:
../inst/include/singlepp/load_references.hpp: In instantiation of 'singlepp::Markers singlepp::load_markers_internal(std::size_t, std::size_t, Reader&) [with Reader = byteme::RawFileReader; Markers = std::vector<std::vector<std::vector<int> > >; std::size_t = long long unsigned int]':
../inst/include/singlepp/load_references.hpp:598:33: required from here
../inst/include/singlepp/load_references.hpp:490:10: warning: unused variable 'continuing' [-Wunused-variable]
490 | bool continuing = false;
| ^~~~~~~~~~
In file included from ../inst/include/singlepp/singlepp.hpp:14:
../inst/include/singlepp/ChooseClassicMarkers.hpp: In instantiation of 'singlepp::Markers singlepp::ChooseClassicMarkers::run(const std::vector<const Matrix*>&, const std::vector<const Label*>&) const [with Matrix = tatami::Matrix<double, int>; Label = int; singlepp::Markers = std::vector<std::vector<std::vector<int> > >]':
find_classic_markers.cpp:42:25: required from here
../inst/include/singlepp/ChooseClassicMarkers.hpp:197:35: warning: comparison of integer expressions of different signedness: 'int' and 'std::size_t' {aka 'long long unsigned int'} [-Wsign-compare]
197 | for (int g = 0; g < ngenes; ++g, ++sIt) {
| ~~^~~~~~~~
../inst/include/singlepp/ChooseClassicMarkers.hpp:214:39: warning: comparison of integer expressions of different signedness: 'int' and 'std::size_t' {aka 'long long unsigned int'} [-Wsign-compare]
214 | for (int g = 0; g < ngenes; ++g, ++lptr, ++rptr, ++sIt) {
| ~~^~~~~~~~
In file included from F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/raticate.hpp:11:
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/DelayedAbind.hpp: In instantiation of 'raticate::Parsed<Data, Index> raticate::parse_DelayedAbind(Rcpp::RObject) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]':
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/raticate.hpp:76:53: required from 'raticate::Parsed<Data, Index> raticate::parse(Rcpp::RObject, bool) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]'
find_classic_markers.cpp:27:55: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/DelayedAbind.hpp:19:26: warning: comparison of integer expressions of different signedness: 'std::size_t' {aka 'long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare]
19 | for (size_t s = 0; s < seeds.size(); ++s) {
| ~~^~~~~~~~~~~~~~
In file included from F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/raticate.hpp:6:
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/SparseArraySeed.hpp: In instantiation of 'raticate::Parsed<Data, Index> raticate::parse_SparseArraySeed(Rcpp::RObject, const V&) [with Data = double; Index = int; V = Rcpp::Vector<14, Rcpp::PreserveStorage>; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]':
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/SparseArraySeed.hpp:113:52: required from 'raticate::Parsed<Data, Index> raticate::parse_SparseArraySeed(Rcpp::RObject) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/raticate.hpp:61:56: required from 'raticate::Parsed<Data, Index> raticate::parse(Rcpp::RObject, bool) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]'
find_classic_markers.cpp:27:55: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/SparseArraySeed.hpp:23:13: warning: comparison of integer expressions of different signedness: 'const std::size_t' {aka 'const long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare]
23 | if (nnz != val.size()) {
| ~~~~^~~~~~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/SparseArraySeed.hpp: In instantiation of 'raticate::Parsed<Data, Index> raticate::parse_SparseArraySeed(Rcpp::RObject, const V&) [with Data = double; Index = int; V = Rcpp::Vector<13>; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]':
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/SparseArraySeed.hpp:116:52: required from 'raticate::Parsed<Data, Index> raticate::parse_SparseArraySeed(Rcpp::RObject) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/raticate.hpp:61:56: required from 'raticate::Parsed<Data, Index> raticate::parse(Rcpp::RObject, bool) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]'
find_classic_markers.cpp:27:55: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/SparseArraySeed.hpp:23:13: warning: comparison of integer expressions of different signedness: 'const std::size_t' {aka 'const long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare]
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/SparseArraySeed.hpp: In instantiation of 'raticate::Parsed<Data, Index> raticate::parse_SparseArraySeed(Rcpp::RObject, const V&) [with Data = double; Index = int; V = Rcpp::Vector<10, Rcpp::PreserveStorage>; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]':
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/SparseArraySeed.hpp:119:52: required from 'raticate::Parsed<Data, Index> raticate::parse_SparseArraySeed(Rcpp::RObject) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/raticate.hpp:61:56: required from 'raticate::Parsed<Data, Index> raticate::parse(Rcpp::RObject, bool) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]'
find_classic_markers.cpp:27:55: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/SparseArraySeed.hpp:23:13: warning: comparison of integer expressions of different signedness: 'const std::size_t' {aka 'const long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare]
F:/biocbuild/bbs-3.17-bioc/R/library/BiocNeighbors/include/kmeans/InitializeKmeansPP.hpp: In instantiation of 'std::vector<IDX> kmeans::InitializeKmeansPP<DATA_t, CLUSTER_t, INDEX_t>::run(int, INDEX_t, const DATA_t*, CLUSTER_t) [with DATA_t = double; CLUSTER_t = int; INDEX_t = int]':
F:/biocbuild/bbs-3.17-bioc/R/library/BiocNeighbors/include/kmeans/InitializeKmeansPP.hpp:136:25: required from 'CLUSTER_t kmeans::InitializeKmeansPP<DATA_t, CLUSTER_t, INDEX_t>::run(int, INDEX_t, const DATA_t*, CLUSTER_t, DATA_t*, CLUSTER_t*) [with DATA_t = double; CLUSTER_t = int; INDEX_t = int]'
F:/biocbuild/bbs-3.17-bioc/R/library/BiocNeighbors/include/kmeans/Kmeans.hpp:91:32: required from 'kmeans::Details<DATA_t, INDEX_t> kmeans::Kmeans<DATA_t, CLUSTER_t, INDEX_t>::run(int, INDEX_t, const DATA_t*, CLUSTER_t, DATA_t*, CLUSTER_t*, kmeans::Initialize<DATA_t, CLUSTER_t, INDEX_t>*, kmeans::Refine<DATA_t, CLUSTER_t, INDEX_t>*) [with DATA_t = double; CLUSTER_t = int; INDEX_t = int]'
F:/biocbuild/bbs-3.17-bioc/R/library/BiocNeighbors/include/knncolle/Kmknn/Kmknn.hpp:106:60: required from 'knncolle::Kmknn<DISTANCE, INDEX_t, DISTANCE_t, QUERY_t, INTERNAL_t>::Kmknn(INDEX_t, INDEX_t, const INPUT_t*, double) [with INPUT_t = double; DISTANCE = knncolle::distances::Euclidean; INDEX_t = int; DISTANCE_t = double; QUERY_t = double; INTERNAL_t = double]'
../inst/include/singlepp/BasicBuilder.hpp:103:127: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/BiocNeighbors/include/kmeans/InitializeKmeansPP.hpp:73:21: warning: variable 'counter' set but not used [-Wunused-but-set-variable]
73 | INDEX_t counter = 0;
| ^~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/BiocNeighbors/include/kmeans/HartiganWong.hpp: In instantiation of 'void kmeans::HartiganWong<DATA_t, CLUSTER_t, INDEX_t>::optimal_transfer(INDEX_t&) [with DATA_t = double; CLUSTER_t = int; INDEX_t = int]':
F:/biocbuild/bbs-3.17-bioc/R/library/BiocNeighbors/include/kmeans/HartiganWong.hpp:235:13: required from 'kmeans::Details<DATA_t, INDEX_t> kmeans::HartiganWong<DATA_t, CLUSTER_t, INDEX_t>::run(int, INDEX_t, const DATA_t*, CLUSTER_t, DATA_t*, CLUSTER_t*) [with DATA_t = double; CLUSTER_t = int; INDEX_t = int]'
F:/biocbuild/bbs-3.17-bioc/R/library/BiocNeighbors/include/kmeans/Kmeans.hpp:98:26: required from 'kmeans::Details<DATA_t, INDEX_t> kmeans::Kmeans<DATA_t, CLUSTER_t, INDEX_t>::run(int, INDEX_t, const DATA_t*, CLUSTER_t, DATA_t*, CLUSTER_t*, kmeans::Initialize<DATA_t, CLUSTER_t, INDEX_t>*, kmeans::Refine<DATA_t, CLUSTER_t, INDEX_t>*) [with DATA_t = double; CLUSTER_t = int; INDEX_t = int]'
F:/biocbuild/bbs-3.17-bioc/R/library/BiocNeighbors/include/knncolle/Kmknn/Kmknn.hpp:106:60: required from 'knncolle::Kmknn<DISTANCE, INDEX_t, DISTANCE_t, QUERY_t, INTERNAL_t>::Kmknn(INDEX_t, INDEX_t, const INPUT_t*, double) [with INPUT_t = double; DISTANCE = knncolle::distances::Euclidean; INDEX_t = int; DISTANCE_t = double; QUERY_t = double; INTERNAL_t = double]'
../inst/include/singlepp/BasicBuilder.hpp:103:127: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/BiocNeighbors/include/kmeans/HartiganWong.hpp:344:41: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
344 | if (obs >= live[l1] && obs >= live[cen] || cen == l1 || cen == ll) {
| ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
In file included from F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/tatami.h:12:
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/utils/compress_sparse_triplets.hpp: In instantiation of 'std::vector<long long unsigned int> tatami::compress_sparse_triplets(std::size_t, std::size_t, U&, V&, W&) [with bool ROW = false; U = std::vector<double>; V = std::vector<int>; W = std::vector<int>; std::size_t = long long unsigned int]':
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/SparseArraySeed.hpp:88:56: required from 'raticate::Parsed<Data, Index> raticate::parse_SparseArraySeed(Rcpp::RObject, const V&) [with Data = double; Index = int; V = Rcpp::Vector<14, Rcpp::PreserveStorage>; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/SparseArraySeed.hpp:113:52: required from 'raticate::Parsed<Data, Index> raticate::parse_SparseArraySeed(Rcpp::RObject) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/raticate.hpp:61:56: required from 'raticate::Parsed<Data, Index> raticate::parse(Rcpp::RObject, bool) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]'
find_classic_markers.cpp:27:55: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/utils/compress_sparse_triplets.hpp:127:28: warning: comparison of integer expressions of different signedness: '__gnu_cxx::__alloc_traits<std::allocator<long long unsigned int>, long long unsigned int>::value_type' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
127 | if (indices[i] == -1) {
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/utils/compress_sparse_triplets.hpp: In instantiation of 'std::vector<long long unsigned int> tatami::compress_sparse_triplets(std::size_t, std::size_t, U&, V&, W&) [with bool ROW = false; U = std::vector<int>; V = std::vector<int>; W = std::vector<int>; std::size_t = long long unsigned int]':
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/SparseArraySeed.hpp:88:56: required from 'raticate::Parsed<Data, Index> raticate::parse_SparseArraySeed(Rcpp::RObject, const V&) [with Data = double; Index = int; V = Rcpp::Vector<13>; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/SparseArraySeed.hpp:116:52: required from 'raticate::Parsed<Data, Index> raticate::parse_SparseArraySeed(Rcpp::RObject) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/raticate.hpp:61:56: required from 'raticate::Parsed<Data, Index> raticate::parse(Rcpp::RObject, bool) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]'
find_classic_markers.cpp:27:55: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/utils/compress_sparse_triplets.hpp:127:28: warning: comparison of integer expressions of different signedness: '__gnu_cxx::__alloc_traits<std::allocator<long long unsigned int>, long long unsigned int>::value_type' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
In file included from F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/tatami.h:7:
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/DelayedSubset.hpp: In instantiation of 'tatami::DelayedSubset<MARGIN, T, IDX, V>::DelayedSubset(std::shared_ptr<const tatami::Matrix<T, IDX> >, V) [with int MARGIN = 0; T = double; IDX = int; V = std::vector<int>]':
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/DelayedSubset.hpp:322:9: required from 'std::shared_ptr<_Tp> tatami::make_DelayedSubset(std::shared_ptr<_Tp>, V) [with int MARGIN = 0; MAT = Matrix<double, int>; V = std::vector<int>]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/DelayedSubset.hpp:28:48: required from 'raticate::Parsed<Data, Index> raticate::parse_DelayedSubset(Rcpp::RObject) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/raticate.hpp:72:54: required from 'raticate::Parsed<Data, Index> raticate::parse(Rcpp::RObject, bool) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]'
find_classic_markers.cpp:27:55: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/DelayedSubset.hpp:48:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
48 | if (chosen != indices.size()) {
| ~~~~~~~^~~~~~~~~~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/DelayedSubset.hpp: In instantiation of 'tatami::DelayedSubset<MARGIN, T, IDX, V>::DelayedSubset(std::shared_ptr<const tatami::Matrix<T, IDX> >, V) [with int MARGIN = 1; T = double; IDX = int; V = std::vector<int>]':
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/DelayedSubset.hpp:322:9: required from 'std::shared_ptr<_Tp> tatami::make_DelayedSubset(std::shared_ptr<_Tp>, V) [with int MARGIN = 1; MAT = Matrix<double, int>; V = std::vector<int>]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/DelayedSubset.hpp:38:48: required from 'raticate::Parsed<Data, Index> raticate::parse_DelayedSubset(Rcpp::RObject) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/raticate.hpp:72:54: required from 'raticate::Parsed<Data, Index> raticate::parse(Rcpp::RObject, bool) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]'
find_classic_markers.cpp:27:55: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/DelayedSubset.hpp:48:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
In file included from F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/tatami.h:5:
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp: In instantiation of 'void tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::check_values(bool) [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView<double>; V = tatami::ArrayView<int>; W = tatami::ArrayView<int>]':
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:55:9: required from 'tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::CompressedSparseMatrix(std::size_t, std::size_t, U, V, W, bool) [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView<double>; V = tatami::ArrayView<int>; W = tatami::ArrayView<int>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/CSparseMatrix.hpp:24:9: required from 'raticate::Parsed<Data, Index> raticate::parse_CSparseMatrix(Rcpp::RObject, const V&) [with Data = double; Index = int; V = Rcpp::Vector<14, Rcpp::PreserveStorage>; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/CSparseMatrix.hpp:40:31: required from 'raticate::Parsed<Data, Index> raticate::parse_dgCMatrix(Rcpp::RObject) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/raticate.hpp:63:50: required from 'raticate::Parsed<Data, Index> raticate::parse(Rcpp::RObject, bool) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]'
find_classic_markers.cpp:27:55: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:154:41: warning: comparison of integer expressions of different signedness: 'int' and 'std::size_t' {aka 'long long unsigned int'} [-Wsign-compare]
154 | if (indptrs[indptrs.size() - 1] != indices.size()) {
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:167:32: warning: comparison of integer expressions of different signedness: 'std::size_t' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
167 | while (counter < indptrs[i]) {
| ~~~~~~~~^~~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp: In instantiation of 'void tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::check_values(bool) [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView<int>; V = tatami::ArrayView<int>; W = tatami::ArrayView<int>]':
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:55:9: required from 'tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::CompressedSparseMatrix(std::size_t, std::size_t, U, V, W, bool) [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView<int>; V = tatami::ArrayView<int>; W = tatami::ArrayView<int>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/CSparseMatrix.hpp:24:9: required from 'raticate::Parsed<Data, Index> raticate::parse_CSparseMatrix(Rcpp::RObject, const V&) [with Data = double; Index = int; V = Rcpp::Vector<10, Rcpp::PreserveStorage>; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/CSparseMatrix.hpp:46:31: required from 'raticate::Parsed<Data, Index> raticate::parse_lgCMatrix(Rcpp::RObject) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/raticate.hpp:65:50: required from 'raticate::Parsed<Data, Index> raticate::parse(Rcpp::RObject, bool) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]'
find_classic_markers.cpp:27:55: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:154:41: warning: comparison of integer expressions of different signedness: 'int' and 'std::size_t' {aka 'long long unsigned int'} [-Wsign-compare]
154 | if (indptrs[indptrs.size() - 1] != indices.size()) {
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:167:32: warning: comparison of integer expressions of different signedness: 'std::size_t' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
167 | while (counter < indptrs[i]) {
| ~~~~~~~~^~~~~~~~~~
In file included from F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/raticate.hpp:12:
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp: In instantiation of 'void raticate::UnknownMatrixCore<Data, Index>::check_quick_dense_dims(const Object&, std::size_t, std::size_t) const [with Object = Rcpp::Vector<10, Rcpp::PreserveStorage>; Data = double; Index = int; std::size_t = long long unsigned int]':
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:200:35: required from 'void raticate::UnknownMatrixCore<Data, Index>::quick_dense_extractor_raw(std::size_t, Data*, std::size_t, std::size_t) const [with bool byrow = true; Data = double; Index = int; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:443:73: required from 'void raticate::UnknownEvaluator<Data, Index>::harvest() [with Data = double; Index = int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:554:31: required from 'void raticate::ParallelCoordinator::run(std::size_t, Function, std::size_t) [with Data = double; Index = int; Function = singlepp::annotate_cells_simple(const tatami::Matrix<double, int>*, std::size_t, const int*, const std::vector<Reference>&, const Markers&, double, bool, double, int*, std::vector<double*>&, double*, int)::<lambda(std::size_t, std::size_t)>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/parallelize.hpp:37:53: required from 'void raticate::parallelize(std::size_t, Function, std::size_t) [with Data = double; Index = int; Function = singlepp::annotate_cells_simple(const tatami::Matrix<double, int>*, std::size_t, const int*, const std::vector<Reference>&, const Markers&, double, bool, double, int*, std::vector<double*>&, double*, int)::<lambda(std::size_t, std::size_t)>; std::size_t = long long unsigned int]'
utils.h:17:39: required from 'void parallelize(std::size_t, Function, int) [with Function = singlepp::annotate_cells_simple(const tatami::Matrix<double, int>*, std::size_t, const int*, const std::vector<Reference>&, const Markers&, double, bool, double, int*, std::vector<double*>&, double*, int)::<lambda(std::size_t, std::size_t)>; std::size_t = long long unsigned int]'
../inst/include/singlepp/annotate_cells.hpp:64:29: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:187:24: warning: comparison of integer expressions of different signedness: 'R_xlen_t' {aka 'long long int'} and 'std::size_t' {aka 'long long unsigned int'} [-Wsign-compare]
187 | if (obj.size() != last - first) {
| ~~~~~~~~~~~^~~~~~~~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp: In instantiation of 'void raticate::UnknownMatrixCore<Data, Index>::check_quick_dense_dims(const Object&, std::size_t, std::size_t) const [with Object = Rcpp::Vector<13>; Data = double; Index = int; std::size_t = long long unsigned int]':
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:205:35: required from 'void raticate::UnknownMatrixCore<Data, Index>::quick_dense_extractor_raw(std::size_t, Data*, std::size_t, std::size_t) const [with bool byrow = true; Data = double; Index = int; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:443:73: required from 'void raticate::UnknownEvaluator<Data, Index>::harvest() [with Data = double; Index = int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:554:31: required from 'void raticate::ParallelCoordinator::run(std::size_t, Function, std::size_t) [with Data = double; Index = int; Function = singlepp::annotate_cells_simple(const tatami::Matrix<double, int>*, std::size_t, const int*, const std::vector<Reference>&, const Markers&, double, bool, double, int*, std::vector<double*>&, double*, int)::<lambda(std::size_t, std::size_t)>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/parallelize.hpp:37:53: required from 'void raticate::parallelize(std::size_t, Function, std::size_t) [with Data = double; Index = int; Function = singlepp::annotate_cells_simple(const tatami::Matrix<double, int>*, std::size_t, const int*, const std::vector<Reference>&, const Markers&, double, bool, double, int*, std::vector<double*>&, double*, int)::<lambda(std::size_t, std::size_t)>; std::size_t = long long unsigned int]'
utils.h:17:39: required from 'void parallelize(std::size_t, Function, int) [with Function = singlepp::annotate_cells_simple(const tatami::Matrix<double, int>*, std::size_t, const int*, const std::vector<Reference>&, const Markers&, double, bool, double, int*, std::vector<double*>&, double*, int)::<lambda(std::size_t, std::size_t)>; std::size_t = long long unsigned int]'
../inst/include/singlepp/annotate_cells.hpp:64:29: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:187:24: warning: comparison of integer expressions of different signedness: 'R_xlen_t' {aka 'long long int'} and 'std::size_t' {aka 'long long unsigned int'} [-Wsign-compare]
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp: In instantiation of 'void raticate::UnknownMatrixCore<Data, Index>::check_quick_dense_dims(const Object&, std::size_t, std::size_t) const [with Object = Rcpp::Vector<14, Rcpp::PreserveStorage>; Data = double; Index = int; std::size_t = long long unsigned int]':
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:210:35: required from 'void raticate::UnknownMatrixCore<Data, Index>::quick_dense_extractor_raw(std::size_t, Data*, std::size_t, std::size_t) const [with bool byrow = true; Data = double; Index = int; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:443:73: required from 'void raticate::UnknownEvaluator<Data, Index>::harvest() [with Data = double; Index = int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:554:31: required from 'void raticate::ParallelCoordinator::run(std::size_t, Function, std::size_t) [with Data = double; Index = int; Function = singlepp::annotate_cells_simple(const tatami::Matrix<double, int>*, std::size_t, const int*, const std::vector<Reference>&, const Markers&, double, bool, double, int*, std::vector<double*>&, double*, int)::<lambda(std::size_t, std::size_t)>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/parallelize.hpp:37:53: required from 'void raticate::parallelize(std::size_t, Function, std::size_t) [with Data = double; Index = int; Function = singlepp::annotate_cells_simple(const tatami::Matrix<double, int>*, std::size_t, const int*, const std::vector<Reference>&, const Markers&, double, bool, double, int*, std::vector<double*>&, double*, int)::<lambda(std::size_t, std::size_t)>; std::size_t = long long unsigned int]'
utils.h:17:39: required from 'void parallelize(std::size_t, Function, int) [with Function = singlepp::annotate_cells_simple(const tatami::Matrix<double, int>*, std::size_t, const int*, const std::vector<Reference>&, const Markers&, double, bool, double, int*, std::vector<double*>&, double*, int)::<lambda(std::size_t, std::size_t)>; std::size_t = long long unsigned int]'
../inst/include/singlepp/annotate_cells.hpp:64:29: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:187:24: warning: comparison of integer expressions of different signedness: 'R_xlen_t' {aka 'long long int'} and 'std::size_t' {aka 'long long unsigned int'} [-Wsign-compare]
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp: In instantiation of 'void raticate::UnknownMatrixCore<Data, Index>::check_quick_sparse_dims(const Object&, std::size_t) const [with Object = Rcpp::Vector<10, Rcpp::PreserveStorage>; Data = double; Index = int; std::size_t = long long unsigned int]':
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:298:36: required from 'void raticate::UnknownMatrixCore<Data, Index>::quick_sparse_extractor_raw(std::size_t, std::size_t*, Data*, Index*, std::size_t, std::size_t) const [with bool byrow = true; Data = double; Index = int; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:457:74: required from 'void raticate::UnknownEvaluator<Data, Index>::harvest() [with Data = double; Index = int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:554:31: required from 'void raticate::ParallelCoordinator::run(std::size_t, Function, std::size_t) [with Data = double; Index = int; Function = singlepp::annotate_cells_simple(const tatami::Matrix<double, int>*, std::size_t, const int*, const std::vector<Reference>&, const Markers&, double, bool, double, int*, std::vector<double*>&, double*, int)::<lambda(std::size_t, std::size_t)>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/parallelize.hpp:37:53: required from 'void raticate::parallelize(std::size_t, Function, std::size_t) [with Data = double; Index = int; Function = singlepp::annotate_cells_simple(const tatami::Matrix<double, int>*, std::size_t, const int*, const std::vector<Reference>&, const Markers&, double, bool, double, int*, std::vector<double*>&, double*, int)::<lambda(std::size_t, std::size_t)>; std::size_t = long long unsigned int]'
utils.h:17:39: required from 'void parallelize(std::size_t, Function, int) [with Function = singlepp::annotate_cells_simple(const tatami::Matrix<double, int>*, std::size_t, const int*, const std::vector<Reference>&, const Markers&, double, bool, double, int*, std::vector<double*>&, double*, int)::<lambda(std::size_t, std::size_t)>; std::size_t = long long unsigned int]'
../inst/include/singlepp/annotate_cells.hpp:64:29: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:246:24: warning: comparison of integer expressions of different signedness: 'R_xlen_t' {aka 'long long int'} and 'std::size_t' {aka 'long long unsigned int'} [-Wsign-compare]
246 | if (obj.size() != nnzero) {
| ~~~~~~~~~~~^~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp: In instantiation of 'void raticate::UnknownMatrixCore<Data, Index>::check_quick_sparse_dims(const Object&, std::size_t) const [with Object = Rcpp::Vector<13>; Data = double; Index = int; std::size_t = long long unsigned int]':
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:303:36: required from 'void raticate::UnknownMatrixCore<Data, Index>::quick_sparse_extractor_raw(std::size_t, std::size_t*, Data*, Index*, std::size_t, std::size_t) const [with bool byrow = true; Data = double; Index = int; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:457:74: required from 'void raticate::UnknownEvaluator<Data, Index>::harvest() [with Data = double; Index = int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:554:31: required from 'void raticate::ParallelCoordinator::run(std::size_t, Function, std::size_t) [with Data = double; Index = int; Function = singlepp::annotate_cells_simple(const tatami::Matrix<double, int>*, std::size_t, const int*, const std::vector<Reference>&, const Markers&, double, bool, double, int*, std::vector<double*>&, double*, int)::<lambda(std::size_t, std::size_t)>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/parallelize.hpp:37:53: required from 'void raticate::parallelize(std::size_t, Function, std::size_t) [with Data = double; Index = int; Function = singlepp::annotate_cells_simple(const tatami::Matrix<double, int>*, std::size_t, const int*, const std::vector<Reference>&, const Markers&, double, bool, double, int*, std::vector<double*>&, double*, int)::<lambda(std::size_t, std::size_t)>; std::size_t = long long unsigned int]'
utils.h:17:39: required from 'void parallelize(std::size_t, Function, int) [with Function = singlepp::annotate_cells_simple(const tatami::Matrix<double, int>*, std::size_t, const int*, const std::vector<Reference>&, const Markers&, double, bool, double, int*, std::vector<double*>&, double*, int)::<lambda(std::size_t, std::size_t)>; std::size_t = long long unsigned int]'
../inst/include/singlepp/annotate_cells.hpp:64:29: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:246:24: warning: comparison of integer expressions of different signedness: 'R_xlen_t' {aka 'long long int'} and 'std::size_t' {aka 'long long unsigned int'} [-Wsign-compare]
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp: In instantiation of 'void raticate::UnknownMatrixCore<Data, Index>::check_quick_sparse_dims(const Object&, std::size_t) const [with Object = Rcpp::Vector<14, Rcpp::PreserveStorage>; Data = double; Index = int; std::size_t = long long unsigned int]':
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:308:36: required from 'void raticate::UnknownMatrixCore<Data, Index>::quick_sparse_extractor_raw(std::size_t, std::size_t*, Data*, Index*, std::size_t, std::size_t) const [with bool byrow = true; Data = double; Index = int; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:457:74: required from 'void raticate::UnknownEvaluator<Data, Index>::harvest() [with Data = double; Index = int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:554:31: required from 'void raticate::ParallelCoordinator::run(std::size_t, Function, std::size_t) [with Data = double; Index = int; Function = singlepp::annotate_cells_simple(const tatami::Matrix<double, int>*, std::size_t, const int*, const std::vector<Reference>&, const Markers&, double, bool, double, int*, std::vector<double*>&, double*, int)::<lambda(std::size_t, std::size_t)>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/parallelize.hpp:37:53: required from 'void raticate::parallelize(std::size_t, Function, std::size_t) [with Data = double; Index = int; Function = singlepp::annotate_cells_simple(const tatami::Matrix<double, int>*, std::size_t, const int*, const std::vector<Reference>&, const Markers&, double, bool, double, int*, std::vector<double*>&, double*, int)::<lambda(std::size_t, std::size_t)>; std::size_t = long long unsigned int]'
utils.h:17:39: required from 'void parallelize(std::size_t, Function, int) [with Function = singlepp::annotate_cells_simple(const tatami::Matrix<double, int>*, std::size_t, const int*, const std::vector<Reference>&, const Markers&, double, bool, double, int*, std::vector<double*>&, double*, int)::<lambda(std::size_t, std::size_t)>; std::size_t = long long unsigned int]'
../inst/include/singlepp/annotate_cells.hpp:64:29: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:246:24: warning: comparison of integer expressions of different signedness: 'R_xlen_t' {aka 'long long int'} and 'std::size_t' {aka 'long long unsigned int'} [-Wsign-compare]
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp: In instantiation of 'void tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::secondary_dimension(IDX, std::size_t, std::size_t, tatami::Workspace*, STORE&) const [with STORE = tatami::CompressedSparseMatrix<false, double, int, tatami::ArrayView<int>, tatami::ArrayView<int>, tatami::ArrayView<int> >::expanded_store; bool ROW = false; T = double; IDX = int; U = tatami::ArrayView<int>; V = tatami::ArrayView<int>; W = tatami::ArrayView<int>; std::size_t = long long unsigned int]':
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:380:28: required from 'void tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::secondary_dimension_expanded(IDX, std::size_t, std::size_t, tatami::Workspace*, T*, T) const [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView<int>; V = tatami::ArrayView<int>; W = tatami::ArrayView<int>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:79:13: required from 'const T* tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::row(std::size_t, T*, std::size_t, std::size_t, tatami::Workspace*) const [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView<int>; V = tatami::ArrayView<int>; W = tatami::ArrayView<int>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:75:14: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:312:23: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
312 | if (i == prev_i + 1) {
| ~~^~~~~~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:317:34: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
317 | } else if (i + 1 == prev_i) {
| ~~~~~~^~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:322:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
322 | } else if (i > prev_i) {
| ~~^~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:327:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
327 | } else if (i < prev_i) {
| ~~^~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp: In instantiation of 'std::pair<long long unsigned int, long long unsigned int> tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::primary_dimension(std::size_t, std::size_t, std::size_t, std::size_t) const [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView<int>; V = tatami::ArrayView<int>; W = tatami::ArrayView<int>; std::size_t = long long unsigned int]':
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:226:25: required from 'void tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::primary_dimension_expanded(std::size_t, std::size_t, std::size_t, std::size_t, T*, T) const [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView<int>; V = tatami::ArrayView<int>; W = tatami::ArrayView<int>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:88:13: required from 'const T* tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::column(std::size_t, T*, std::size_t, std::size_t, tatami::Workspace*) const [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView<int>; V = tatami::ArrayView<int>; W = tatami::ArrayView<int>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:84:14: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:188:14: warning: unused variable 'xIt' [-Wunused-variable]
188 | auto xIt = values.begin() + pstart;
| ^~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp: In instantiation of 'void tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::secondary_dimension(IDX, std::size_t, std::size_t, tatami::Workspace*, STORE&) const [with STORE = tatami::CompressedSparseMatrix<false, double, int, tatami::ArrayView<int>, tatami::ArrayView<int>, tatami::ArrayView<int> >::raw_store; bool ROW = false; T = double; IDX = int; U = tatami::ArrayView<int>; V = tatami::ArrayView<int>; W = tatami::ArrayView<int>; std::size_t = long long unsigned int]':
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:362:28: required from 'tatami::SparseRange<T, IDX> tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::secondary_dimension_raw(IDX, std::size_t, std::size_t, tatami::Workspace*, T*, IDX*) const [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView<int>; V = tatami::ArrayView<int>; W = tatami::ArrayView<int>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:106:20: required from 'tatami::SparseRange<T, IDX> tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::sparse_row(std::size_t, T*, IDX*, std::size_t, std::size_t, tatami::Workspace*, bool) const [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView<int>; V = tatami::ArrayView<int>; W = tatami::ArrayView<int>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:101:25: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:312:23: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
312 | if (i == prev_i + 1) {
| ~~^~~~~~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:317:34: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
317 | } else if (i + 1 == prev_i) {
| ~~~~~~^~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:322:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
322 | } else if (i > prev_i) {
| ~~^~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:327:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
327 | } else if (i < prev_i) {
| ~~^~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp: In instantiation of 'void tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::secondary_dimension(IDX, std::size_t, std::size_t, tatami::Workspace*, STORE&) const [with STORE = tatami::CompressedSparseMatrix<false, double, int, tatami::ArrayView<double>, tatami::ArrayView<int>, tatami::ArrayView<int> >::expanded_store; bool ROW = false; T = double; IDX = int; U = tatami::ArrayView<double>; V = tatami::ArrayView<int>; W = tatami::ArrayView<int>; std::size_t = long long unsigned int]':
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:380:28: required from 'void tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::secondary_dimension_expanded(IDX, std::size_t, std::size_t, tatami::Workspace*, T*, T) const [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView<double>; V = tatami::ArrayView<int>; W = tatami::ArrayView<int>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:79:13: required from 'const T* tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::row(std::size_t, T*, std::size_t, std::size_t, tatami::Workspace*) const [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView<double>; V = tatami::ArrayView<int>; W = tatami::ArrayView<int>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:75:14: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:312:23: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
312 | if (i == prev_i + 1) {
| ~~^~~~~~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:317:34: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
317 | } else if (i + 1 == prev_i) {
| ~~~~~~^~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:322:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
322 | } else if (i > prev_i) {
| ~~^~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:327:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
327 | } else if (i < prev_i) {
| ~~^~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp: In instantiation of 'std::pair<long long unsigned int, long long unsigned int> tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::primary_dimension(std::size_t, std::size_t, std::size_t, std::size_t) const [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView<double>; V = tatami::ArrayView<int>; W = tatami::ArrayView<int>; std::size_t = long long unsigned int]':
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:226:25: required from 'void tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::primary_dimension_expanded(std::size_t, std::size_t, std::size_t, std::size_t, T*, T) const [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView<double>; V = tatami::ArrayView<int>; W = tatami::ArrayView<int>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:88:13: required from 'const T* tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::column(std::size_t, T*, std::size_t, std::size_t, tatami::Workspace*) const [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView<double>; V = tatami::ArrayView<int>; W = tatami::ArrayView<int>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:84:14: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:188:14: warning: unused variable 'xIt' [-Wunused-variable]
188 | auto xIt = values.begin() + pstart;
| ^~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp: In instantiation of 'void tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::secondary_dimension(IDX, std::size_t, std::size_t, tatami::Workspace*, STORE&) const [with STORE = tatami::CompressedSparseMatrix<false, double, int, tatami::ArrayView<double>, tatami::ArrayView<int>, tatami::ArrayView<int> >::raw_store; bool ROW = false; T = double; IDX = int; U = tatami::ArrayView<double>; V = tatami::ArrayView<int>; W = tatami::ArrayView<int>; std::size_t = long long unsigned int]':
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:362:28: required from 'tatami::SparseRange<T, IDX> tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::secondary_dimension_raw(IDX, std::size_t, std::size_t, tatami::Workspace*, T*, IDX*) const [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView<double>; V = tatami::ArrayView<int>; W = tatami::ArrayView<int>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:106:20: required from 'tatami::SparseRange<T, IDX> tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::sparse_row(std::size_t, T*, IDX*, std::size_t, std::size_t, tatami::Workspace*, bool) const [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView<double>; V = tatami::ArrayView<int>; W = tatami::ArrayView<int>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:101:25: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:312:23: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
312 | if (i == prev_i + 1) {
| ~~^~~~~~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:317:34: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
317 | } else if (i + 1 == prev_i) {
| ~~~~~~^~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:322:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
322 | } else if (i > prev_i) {
| ~~^~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:327:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
327 | } else if (i < prev_i) {
| ~~^~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp: In instantiation of 'void tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::secondary_dimension(IDX, std::size_t, std::size_t, tatami::Workspace*, STORE&) const [with STORE = tatami::CompressedSparseMatrix<false, double, int, std::vector<int>, std::vector<int>, std::vector<long long unsigned int> >::expanded_store; bool ROW = false; T = double; IDX = int; U = std::vector<int>; V = std::vector<int>; W = std::vector<long long unsigned int>; std::size_t = long long unsigned int]':
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:380:28: required from 'void tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::secondary_dimension_expanded(IDX, std::size_t, std::size_t, tatami::Workspace*, T*, T) const [with bool ROW = false; T = double; IDX = int; U = std::vector<int>; V = std::vector<int>; W = std::vector<long long unsigned int>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:79:13: required from 'const T* tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::row(std::size_t, T*, std::size_t, std::size_t, tatami::Workspace*) const [with bool ROW = false; T = double; IDX = int; U = std::vector<int>; V = std::vector<int>; W = std::vector<long long unsigned int>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:75:14: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:312:23: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
312 | if (i == prev_i + 1) {
| ~~^~~~~~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:317:34: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
317 | } else if (i + 1 == prev_i) {
| ~~~~~~^~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:322:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
322 | } else if (i > prev_i) {
| ~~^~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:327:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
327 | } else if (i < prev_i) {
| ~~^~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp: In instantiation of 'std::pair<long long unsigned int, long long unsigned int> tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::primary_dimension(std::size_t, std::size_t, std::size_t, std::size_t) const [with bool ROW = false; T = double; IDX = int; U = std::vector<int>; V = std::vector<int>; W = std::vector<long long unsigned int>; std::size_t = long long unsigned int]':
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:226:25: required from 'void tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::primary_dimension_expanded(std::size_t, std::size_t, std::size_t, std::size_t, T*, T) const [with bool ROW = false; T = double; IDX = int; U = std::vector<int>; V = std::vector<int>; W = std::vector<long long unsigned int>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:88:13: required from 'const T* tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::column(std::size_t, T*, std::size_t, std::size_t, tatami::Workspace*) const [with bool ROW = false; T = double; IDX = int; U = std::vector<int>; V = std::vector<int>; W = std::vector<long long unsigned int>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:84:14: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:188:14: warning: variable 'xIt' set but not used [-Wunused-but-set-variable]
188 | auto xIt = values.begin() + pstart;
| ^~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp: In instantiation of 'void tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::secondary_dimension(IDX, std::size_t, std::size_t, tatami::Workspace*, STORE&) const [with STORE = tatami::CompressedSparseMatrix<false, double, int, std::vector<int>, std::vector<int>, std::vector<long long unsigned int> >::raw_store; bool ROW = false; T = double; IDX = int; U = std::vector<int>; V = std::vector<int>; W = std::vector<long long unsigned int>; std::size_t = long long unsigned int]':
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:362:28: required from 'tatami::SparseRange<T, IDX> tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::secondary_dimension_raw(IDX, std::size_t, std::size_t, tatami::Workspace*, T*, IDX*) const [with bool ROW = false; T = double; IDX = int; U = std::vector<int>; V = std::vector<int>; W = std::vector<long long unsigned int>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:106:20: required from 'tatami::SparseRange<T, IDX> tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::sparse_row(std::size_t, T*, IDX*, std::size_t, std::size_t, tatami::Workspace*, bool) const [with bool ROW = false; T = double; IDX = int; U = std::vector<int>; V = std::vector<int>; W = std::vector<long long unsigned int>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:101:25: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:312:23: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
312 | if (i == prev_i + 1) {
| ~~^~~~~~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:317:34: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
317 | } else if (i + 1 == prev_i) {
| ~~~~~~^~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:322:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
322 | } else if (i > prev_i) {
| ~~^~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:327:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
327 | } else if (i < prev_i) {
| ~~^~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp: In instantiation of 'void tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::secondary_dimension(IDX, std::size_t, std::size_t, tatami::Workspace*, STORE&) const [with STORE = tatami::CompressedSparseMatrix<false, double, int, std::vector<double>, std::vector<int>, std::vector<long long unsigned int> >::expanded_store; bool ROW = false; T = double; IDX = int; U = std::vector<double>; V = std::vector<int>; W = std::vector<long long unsigned int>; std::size_t = long long unsigned int]':
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:380:28: required from 'void tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::secondary_dimension_expanded(IDX, std::size_t, std::size_t, tatami::Workspace*, T*, T) const [with bool ROW = false; T = double; IDX = int; U = std::vector<double>; V = std::vector<int>; W = std::vector<long long unsigned int>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:79:13: required from 'const T* tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::row(std::size_t, T*, std::size_t, std::size_t, tatami::Workspace*) const [with bool ROW = false; T = double; IDX = int; U = std::vector<double>; V = std::vector<int>; W = std::vector<long long unsigned int>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:75:14: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:312:23: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
312 | if (i == prev_i + 1) {
| ~~^~~~~~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:317:34: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
317 | } else if (i + 1 == prev_i) {
| ~~~~~~^~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:322:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
322 | } else if (i > prev_i) {
| ~~^~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:327:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
327 | } else if (i < prev_i) {
| ~~^~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp: In instantiation of 'std::pair<long long unsigned int, long long unsigned int> tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::primary_dimension(std::size_t, std::size_t, std::size_t, std::size_t) const [with bool ROW = false; T = double; IDX = int; U = std::vector<double>; V = std::vector<int>; W = std::vector<long long unsigned int>; std::size_t = long long unsigned int]':
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:226:25: required from 'void tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::primary_dimension_expanded(std::size_t, std::size_t, std::size_t, std::size_t, T*, T) const [with bool ROW = false; T = double; IDX = int; U = std::vector<double>; V = std::vector<int>; W = std::vector<long long unsigned int>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:88:13: required from 'const T* tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::column(std::size_t, T*, std::size_t, std::size_t, tatami::Workspace*) const [with bool ROW = false; T = double; IDX = int; U = std::vector<double>; V = std::vector<int>; W = std::vector<long long unsigned int>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:84:14: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:188:14: warning: variable 'xIt' set but not used [-Wunused-but-set-variable]
188 | auto xIt = values.begin() + pstart;
| ^~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp: In instantiation of 'void tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::secondary_dimension(IDX, std::size_t, std::size_t, tatami::Workspace*, STORE&) const [with STORE = tatami::CompressedSparseMatrix<false, double, int, std::vector<double>, std::vector<int>, std::vector<long long unsigned int> >::raw_store; bool ROW = false; T = double; IDX = int; U = std::vector<double>; V = std::vector<int>; W = std::vector<long long unsigned int>; std::size_t = long long unsigned int]':
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:362:28: required from 'tatami::SparseRange<T, IDX> tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::secondary_dimension_raw(IDX, std::size_t, std::size_t, tatami::Workspace*, T*, IDX*) const [with bool ROW = false; T = double; IDX = int; U = std::vector<double>; V = std::vector<int>; W = std::vector<long long unsigned int>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:106:20: required from 'tatami::SparseRange<T, IDX> tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::sparse_row(std::size_t, T*, IDX*, std::size_t, std::size_t, tatami::Workspace*, bool) const [with bool ROW = false; T = double; IDX = int; U = std::vector<double>; V = std::vector<int>; W = std::vector<long long unsigned int>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:101:25: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:312:23: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
312 | if (i == prev_i + 1) {
| ~~^~~~~~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:317:34: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
317 | } else if (i + 1 == prev_i) {
| ~~~~~~^~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:322:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
322 | } else if (i > prev_i) {
| ~~^~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:327:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
327 | } else if (i < prev_i) {
| ~~^~~~~~~~
g++ -std=gnu++17 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I../inst/include/ -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/BiocNeighbors/include' -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c integrate_build.cpp -o integrate_build.o
In file included from F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/stats/sums.hpp:5,
from F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/tatami.h:19,
from F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/tatami.hpp:4,
from F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/utils.hpp:15,
from F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/SimpleMatrix.hpp:4,
from F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/raticate.hpp:5,
from utils.h:13,
from integrate_build.cpp:3:
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/stats/apply.hpp:220: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
220 | #pragma omp parallel
|
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/stats/apply.hpp:234: warning: ignoring '#pragma omp for' [-Wunknown-pragmas]
234 | #pragma omp for schedule(static)
|
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/stats/apply.hpp:267: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
267 | #pragma omp parallel
|
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/stats/apply.hpp:278: warning: ignoring '#pragma omp for' [-Wunknown-pragmas]
278 | #pragma omp for schedule(static)
|
In file included from F:/biocbuild/bbs-3.17-bioc/R/library/BiocNeighbors/include/kmeans/Kmeans.hpp:5,
from F:/biocbuild/bbs-3.17-bioc/R/library/BiocNeighbors/include/knncolle/Kmknn/Kmknn.hpp:7,
from F:/biocbuild/bbs-3.17-bioc/R/library/BiocNeighbors/include/knncolle/knncolle.hpp:8,
from ../inst/include/singlepp/build_indices.hpp:8,
from ../inst/include/singlepp/BasicBuilder.hpp:5,
from ../inst/include/singlepp/Classifier.hpp:5,
from ../inst/include/singlepp/singlepp.hpp:10,
from utils.h:24:
F:/biocbuild/bbs-3.17-bioc/R/library/BiocNeighbors/include/kmeans/HartiganWong.hpp:163: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
163 | #pragma omp parallel for
|
In file included from F:/biocbuild/bbs-3.17-bioc/R/library/BiocNeighbors/include/kmeans/Kmeans.hpp:6:
F:/biocbuild/bbs-3.17-bioc/R/library/BiocNeighbors/include/kmeans/InitializeKmeansPP.hpp:77: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
77 | #pragma omp parallel for
|
In file included from F:/biocbuild/bbs-3.17-bioc/R/library/BiocNeighbors/include/knncolle/knncolle.hpp:19:
F:/biocbuild/bbs-3.17-bioc/R/library/BiocNeighbors/include/knncolle/utils/find_nearest_neighbors.hpp:49: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
49 | #pragma omp parallel for
|
F:/biocbuild/bbs-3.17-bioc/R/library/BiocNeighbors/include/knncolle/utils/find_nearest_neighbors.hpp:92: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
92 | #pragma omp parallel for
|
In file included from ../inst/include/singlepp/annotate_cells.hpp:9,
from ../inst/include/singlepp/BasicScorer.hpp:5,
from ../inst/include/singlepp/Classifier.hpp:6:
../inst/include/singlepp/fine_tune.hpp: In function 'std::pair<int, double> singlepp::fill_labels_in_use(const std::vector<double>&, double, std::vector<int>&)':
../inst/include/singlepp/fine_tune.hpp:30:15: warning: comparison of integer expressions of different signedness: 'std::size_t' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
30 | if (i != best_label && next_score < val) {
| ~~^~~~~~~~~~~~~
../inst/include/singlepp/fine_tune.hpp: In function 'std::pair<int, double> singlepp::replace_labels_in_use(const std::vector<double>&, double, std::vector<int>&)':
../inst/include/singlepp/fine_tune.hpp:56:15: warning: comparison of integer expressions of different signedness: 'std::size_t' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
56 | if (i != best_index && next_score < val) {
| ~~^~~~~~~~~~~~~
In file included from ../inst/include/singlepp/IntegratedScorer.hpp:8,
from ../inst/include/singlepp/singlepp.hpp:12:
../inst/include/singlepp/IntegratedBuilder.hpp: In member function 'std::vector<singlepp::IntegratedReference> singlepp::IntegratedBuilder::finish()':
../inst/include/singlepp/IntegratedBuilder.hpp:438:36: warning: comparison of integer expressions of different signedness: 'const int' and 'std::size_t' {aka 'long long unsigned int'} [-Wsign-compare]
438 | if (it->second < first) {
| ~~~~~~~~~~~^~~~~~~
../inst/include/singlepp/IntegratedBuilder.hpp:441:36: warning: comparison of integer expressions of different signedness: 'const int' and 'std::size_t' {aka 'long long unsigned int'} [-Wsign-compare]
441 | if (it->second > last) {
| ~~~~~~~~~~~^~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/BiocNeighbors/include/knncolle/Kmknn/Kmknn.hpp: In instantiation of 'knncolle::Kmknn<DISTANCE, INDEX_t, DISTANCE_t, QUERY_t, INTERNAL_t>::Kmknn(INDEX_t, INDEX_t, const INPUT_t*, double) [with INPUT_t = double; DISTANCE = knncolle::distances::Euclidean; INDEX_t = int; DISTANCE_t = double; QUERY_t = double; INTERNAL_t = double]':
../inst/include/singlepp/BasicBuilder.hpp:103:127: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/BiocNeighbors/include/knncolle/Kmknn/Kmknn.hpp:116:31: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
116 | for (INDEX_t i = 1; i < ncenters; ++i) {
| ~~^~~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/BiocNeighbors/include/knncolle/Kmknn/Kmknn.hpp:133:35: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
133 | for (INDEX_t c = 0; c < ncenters; ++c) {
| ~~^~~~~~~~~~
../inst/include/singlepp/fine_tune.hpp: In instantiation of 'std::pair<int, double> singlepp::FineTuner::run(singlepp::RankedVector<double, int>&, const std::vector<singlepp::Reference>&, const singlepp::Markers&, std::vector<double>&, double, double) [with bool test = false; singlepp::RankedVector<double, int> = std::vector<std::pair<double, int>, std::allocator<std::pair<double, int> > >; singlepp::Markers = std::vector<std::vector<std::vector<int> > >]':
../inst/include/singlepp/annotate_cells.hpp:120:36: required from here
../inst/include/singlepp/fine_tune.hpp:136:24: warning: unused variable 'NR' [-Wunused-variable]
136 | size_t NR = curref.index->ndim();
| ^~
In file included from ../inst/include/singlepp/singlepp.hpp:15:
../inst/include/singlepp/load_references.hpp: In instantiation of 'singlepp::Markers singlepp::load_markers_internal(std::size_t, std::size_t, Reader&) [with Reader = byteme::RawFileReader; Markers = std::vector<std::vector<std::vector<int> > >; std::size_t = long long unsigned int]':
../inst/include/singlepp/load_references.hpp:598:33: required from here
../inst/include/singlepp/load_references.hpp:490:10: warning: unused variable 'continuing' [-Wunused-variable]
490 | bool continuing = false;
| ^~~~~~~~~~
In file included from F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/raticate.hpp:11:
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/DelayedAbind.hpp: In instantiation of 'raticate::Parsed<Data, Index> raticate::parse_DelayedAbind(Rcpp::RObject) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]':
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/raticate.hpp:76:53: required from 'raticate::Parsed<Data, Index> raticate::parse(Rcpp::RObject, bool) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]'
integrate_build.cpp:24:51: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/DelayedAbind.hpp:19:26: warning: comparison of integer expressions of different signedness: 'std::size_t' {aka 'long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare]
19 | for (size_t s = 0; s < seeds.size(); ++s) {
| ~~^~~~~~~~~~~~~~
In file included from F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/raticate.hpp:6:
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/SparseArraySeed.hpp: In instantiation of 'raticate::Parsed<Data, Index> raticate::parse_SparseArraySeed(Rcpp::RObject, const V&) [with Data = double; Index = int; V = Rcpp::Vector<14, Rcpp::PreserveStorage>; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]':
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/SparseArraySeed.hpp:113:52: required from 'raticate::Parsed<Data, Index> raticate::parse_SparseArraySeed(Rcpp::RObject) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/raticate.hpp:61:56: required from 'raticate::Parsed<Data, Index> raticate::parse(Rcpp::RObject, bool) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]'
integrate_build.cpp:24:51: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/SparseArraySeed.hpp:23:13: warning: comparison of integer expressions of different signedness: 'const std::size_t' {aka 'const long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare]
23 | if (nnz != val.size()) {
| ~~~~^~~~~~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/SparseArraySeed.hpp: In instantiation of 'raticate::Parsed<Data, Index> raticate::parse_SparseArraySeed(Rcpp::RObject, const V&) [with Data = double; Index = int; V = Rcpp::Vector<13>; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]':
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/SparseArraySeed.hpp:116:52: required from 'raticate::Parsed<Data, Index> raticate::parse_SparseArraySeed(Rcpp::RObject) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/raticate.hpp:61:56: required from 'raticate::Parsed<Data, Index> raticate::parse(Rcpp::RObject, bool) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]'
integrate_build.cpp:24:51: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/SparseArraySeed.hpp:23:13: warning: comparison of integer expressions of different signedness: 'const std::size_t' {aka 'const long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare]
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/SparseArraySeed.hpp: In instantiation of 'raticate::Parsed<Data, Index> raticate::parse_SparseArraySeed(Rcpp::RObject, const V&) [with Data = double; Index = int; V = Rcpp::Vector<10, Rcpp::PreserveStorage>; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]':
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/SparseArraySeed.hpp:119:52: required from 'raticate::Parsed<Data, Index> raticate::parse_SparseArraySeed(Rcpp::RObject) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/raticate.hpp:61:56: required from 'raticate::Parsed<Data, Index> raticate::parse(Rcpp::RObject, bool) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]'
integrate_build.cpp:24:51: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/SparseArraySeed.hpp:23:13: warning: comparison of integer expressions of different signedness: 'const std::size_t' {aka 'const long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare]
F:/biocbuild/bbs-3.17-bioc/R/library/BiocNeighbors/include/kmeans/InitializeKmeansPP.hpp: In instantiation of 'std::vector<IDX> kmeans::InitializeKmeansPP<DATA_t, CLUSTER_t, INDEX_t>::run(int, INDEX_t, const DATA_t*, CLUSTER_t) [with DATA_t = double; CLUSTER_t = int; INDEX_t = int]':
F:/biocbuild/bbs-3.17-bioc/R/library/BiocNeighbors/include/kmeans/InitializeKmeansPP.hpp:136:25: required from 'CLUSTER_t kmeans::InitializeKmeansPP<DATA_t, CLUSTER_t, INDEX_t>::run(int, INDEX_t, const DATA_t*, CLUSTER_t, DATA_t*, CLUSTER_t*) [with DATA_t = double; CLUSTER_t = int; INDEX_t = int]'
F:/biocbuild/bbs-3.17-bioc/R/library/BiocNeighbors/include/kmeans/Kmeans.hpp:91:32: required from 'kmeans::Details<DATA_t, INDEX_t> kmeans::Kmeans<DATA_t, CLUSTER_t, INDEX_t>::run(int, INDEX_t, const DATA_t*, CLUSTER_t, DATA_t*, CLUSTER_t*, kmeans::Initialize<DATA_t, CLUSTER_t, INDEX_t>*, kmeans::Refine<DATA_t, CLUSTER_t, INDEX_t>*) [with DATA_t = double; CLUSTER_t = int; INDEX_t = int]'
F:/biocbuild/bbs-3.17-bioc/R/library/BiocNeighbors/include/knncolle/Kmknn/Kmknn.hpp:106:60: required from 'knncolle::Kmknn<DISTANCE, INDEX_t, DISTANCE_t, QUERY_t, INTERNAL_t>::Kmknn(INDEX_t, INDEX_t, const INPUT_t*, double) [with INPUT_t = double; DISTANCE = knncolle::distances::Euclidean; INDEX_t = int; DISTANCE_t = double; QUERY_t = double; INTERNAL_t = double]'
../inst/include/singlepp/BasicBuilder.hpp:103:127: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/BiocNeighbors/include/kmeans/InitializeKmeansPP.hpp:73:21: warning: variable 'counter' set but not used [-Wunused-but-set-variable]
73 | INDEX_t counter = 0;
| ^~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/BiocNeighbors/include/kmeans/HartiganWong.hpp: In instantiation of 'void kmeans::HartiganWong<DATA_t, CLUSTER_t, INDEX_t>::optimal_transfer(INDEX_t&) [with DATA_t = double; CLUSTER_t = int; INDEX_t = int]':
F:/biocbuild/bbs-3.17-bioc/R/library/BiocNeighbors/include/kmeans/HartiganWong.hpp:235:13: required from 'kmeans::Details<DATA_t, INDEX_t> kmeans::HartiganWong<DATA_t, CLUSTER_t, INDEX_t>::run(int, INDEX_t, const DATA_t*, CLUSTER_t, DATA_t*, CLUSTER_t*) [with DATA_t = double; CLUSTER_t = int; INDEX_t = int]'
F:/biocbuild/bbs-3.17-bioc/R/library/BiocNeighbors/include/kmeans/Kmeans.hpp:98:26: required from 'kmeans::Details<DATA_t, INDEX_t> kmeans::Kmeans<DATA_t, CLUSTER_t, INDEX_t>::run(int, INDEX_t, const DATA_t*, CLUSTER_t, DATA_t*, CLUSTER_t*, kmeans::Initialize<DATA_t, CLUSTER_t, INDEX_t>*, kmeans::Refine<DATA_t, CLUSTER_t, INDEX_t>*) [with DATA_t = double; CLUSTER_t = int; INDEX_t = int]'
F:/biocbuild/bbs-3.17-bioc/R/library/BiocNeighbors/include/knncolle/Kmknn/Kmknn.hpp:106:60: required from 'knncolle::Kmknn<DISTANCE, INDEX_t, DISTANCE_t, QUERY_t, INTERNAL_t>::Kmknn(INDEX_t, INDEX_t, const INPUT_t*, double) [with INPUT_t = double; DISTANCE = knncolle::distances::Euclidean; INDEX_t = int; DISTANCE_t = double; QUERY_t = double; INTERNAL_t = double]'
../inst/include/singlepp/BasicBuilder.hpp:103:127: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/BiocNeighbors/include/kmeans/HartiganWong.hpp:344:41: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
344 | if (obs >= live[l1] && obs >= live[cen] || cen == l1 || cen == ll) {
| ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
In file included from F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/tatami.h:12:
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/utils/compress_sparse_triplets.hpp: In instantiation of 'std::vector<long long unsigned int> tatami::compress_sparse_triplets(std::size_t, std::size_t, U&, V&, W&) [with bool ROW = false; U = std::vector<double>; V = std::vector<int>; W = std::vector<int>; std::size_t = long long unsigned int]':
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/SparseArraySeed.hpp:88:56: required from 'raticate::Parsed<Data, Index> raticate::parse_SparseArraySeed(Rcpp::RObject, const V&) [with Data = double; Index = int; V = Rcpp::Vector<14, Rcpp::PreserveStorage>; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/SparseArraySeed.hpp:113:52: required from 'raticate::Parsed<Data, Index> raticate::parse_SparseArraySeed(Rcpp::RObject) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/raticate.hpp:61:56: required from 'raticate::Parsed<Data, Index> raticate::parse(Rcpp::RObject, bool) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]'
integrate_build.cpp:24:51: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/utils/compress_sparse_triplets.hpp:127:28: warning: comparison of integer expressions of different signedness: '__gnu_cxx::__alloc_traits<std::allocator<long long unsigned int>, long long unsigned int>::value_type' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
127 | if (indices[i] == -1) {
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/utils/compress_sparse_triplets.hpp: In instantiation of 'std::vector<long long unsigned int> tatami::compress_sparse_triplets(std::size_t, std::size_t, U&, V&, W&) [with bool ROW = false; U = std::vector<int>; V = std::vector<int>; W = std::vector<int>; std::size_t = long long unsigned int]':
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/SparseArraySeed.hpp:88:56: required from 'raticate::Parsed<Data, Index> raticate::parse_SparseArraySeed(Rcpp::RObject, const V&) [with Data = double; Index = int; V = Rcpp::Vector<13>; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/SparseArraySeed.hpp:116:52: required from 'raticate::Parsed<Data, Index> raticate::parse_SparseArraySeed(Rcpp::RObject) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/raticate.hpp:61:56: required from 'raticate::Parsed<Data, Index> raticate::parse(Rcpp::RObject, bool) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]'
integrate_build.cpp:24:51: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/utils/compress_sparse_triplets.hpp:127:28: warning: comparison of integer expressions of different signedness: '__gnu_cxx::__alloc_traits<std::allocator<long long unsigned int>, long long unsigned int>::value_type' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
In file included from F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/tatami.h:7:
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/DelayedSubset.hpp: In instantiation of 'tatami::DelayedSubset<MARGIN, T, IDX, V>::DelayedSubset(std::shared_ptr<const tatami::Matrix<T, IDX> >, V) [with int MARGIN = 0; T = double; IDX = int; V = std::vector<int>]':
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/DelayedSubset.hpp:322:9: required from 'std::shared_ptr<_Tp> tatami::make_DelayedSubset(std::shared_ptr<_Tp>, V) [with int MARGIN = 0; MAT = Matrix<double, int>; V = std::vector<int>]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/DelayedSubset.hpp:28:48: required from 'raticate::Parsed<Data, Index> raticate::parse_DelayedSubset(Rcpp::RObject) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/raticate.hpp:72:54: required from 'raticate::Parsed<Data, Index> raticate::parse(Rcpp::RObject, bool) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]'
integrate_build.cpp:24:51: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/DelayedSubset.hpp:48:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
48 | if (chosen != indices.size()) {
| ~~~~~~~^~~~~~~~~~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/DelayedSubset.hpp: In instantiation of 'tatami::DelayedSubset<MARGIN, T, IDX, V>::DelayedSubset(std::shared_ptr<const tatami::Matrix<T, IDX> >, V) [with int MARGIN = 1; T = double; IDX = int; V = std::vector<int>]':
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/DelayedSubset.hpp:322:9: required from 'std::shared_ptr<_Tp> tatami::make_DelayedSubset(std::shared_ptr<_Tp>, V) [with int MARGIN = 1; MAT = Matrix<double, int>; V = std::vector<int>]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/DelayedSubset.hpp:38:48: required from 'raticate::Parsed<Data, Index> raticate::parse_DelayedSubset(Rcpp::RObject) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/raticate.hpp:72:54: required from 'raticate::Parsed<Data, Index> raticate::parse(Rcpp::RObject, bool) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]'
integrate_build.cpp:24:51: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/DelayedSubset.hpp:48:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
In file included from F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/tatami.h:5:
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp: In instantiation of 'void tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::check_values(bool) [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView<double>; V = tatami::ArrayView<int>; W = tatami::ArrayView<int>]':
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:55:9: required from 'tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::CompressedSparseMatrix(std::size_t, std::size_t, U, V, W, bool) [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView<double>; V = tatami::ArrayView<int>; W = tatami::ArrayView<int>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/CSparseMatrix.hpp:24:9: required from 'raticate::Parsed<Data, Index> raticate::parse_CSparseMatrix(Rcpp::RObject, const V&) [with Data = double; Index = int; V = Rcpp::Vector<14, Rcpp::PreserveStorage>; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/CSparseMatrix.hpp:40:31: required from 'raticate::Parsed<Data, Index> raticate::parse_dgCMatrix(Rcpp::RObject) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/raticate.hpp:63:50: required from 'raticate::Parsed<Data, Index> raticate::parse(Rcpp::RObject, bool) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]'
integrate_build.cpp:24:51: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:154:41: warning: comparison of integer expressions of different signedness: 'int' and 'std::size_t' {aka 'long long unsigned int'} [-Wsign-compare]
154 | if (indptrs[indptrs.size() - 1] != indices.size()) {
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:167:32: warning: comparison of integer expressions of different signedness: 'std::size_t' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
167 | while (counter < indptrs[i]) {
| ~~~~~~~~^~~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp: In instantiation of 'void tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::check_values(bool) [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView<int>; V = tatami::ArrayView<int>; W = tatami::ArrayView<int>]':
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:55:9: required from 'tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::CompressedSparseMatrix(std::size_t, std::size_t, U, V, W, bool) [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView<int>; V = tatami::ArrayView<int>; W = tatami::ArrayView<int>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/CSparseMatrix.hpp:24:9: required from 'raticate::Parsed<Data, Index> raticate::parse_CSparseMatrix(Rcpp::RObject, const V&) [with Data = double; Index = int; V = Rcpp::Vector<10, Rcpp::PreserveStorage>; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/CSparseMatrix.hpp:46:31: required from 'raticate::Parsed<Data, Index> raticate::parse_lgCMatrix(Rcpp::RObject) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/raticate.hpp:65:50: required from 'raticate::Parsed<Data, Index> raticate::parse(Rcpp::RObject, bool) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]'
integrate_build.cpp:24:51: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:154:41: warning: comparison of integer expressions of different signedness: 'int' and 'std::size_t' {aka 'long long unsigned int'} [-Wsign-compare]
154 | if (indptrs[indptrs.size() - 1] != indices.size()) {
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:167:32: warning: comparison of integer expressions of different signedness: 'std::size_t' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
167 | while (counter < indptrs[i]) {
| ~~~~~~~~^~~~~~~~~~
In file included from F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/raticate.hpp:12:
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp: In instantiation of 'void raticate::UnknownMatrixCore<Data, Index>::check_quick_dense_dims(const Object&, std::size_t, std::size_t) const [with Object = Rcpp::Vector<10, Rcpp::PreserveStorage>; Data = double; Index = int; std::size_t = long long unsigned int]':
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:200:35: required from 'void raticate::UnknownMatrixCore<Data, Index>::quick_dense_extractor_raw(std::size_t, Data*, std::size_t, std::size_t) const [with bool byrow = true; Data = double; Index = int; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:443:73: required from 'void raticate::UnknownEvaluator<Data, Index>::harvest() [with Data = double; Index = int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:554:31: required from 'void raticate::ParallelCoordinator::run(std::size_t, Function, std::size_t) [with Data = double; Index = int; Function = singlepp::annotate_cells_simple(const tatami::Matrix<double, int>*, std::size_t, const int*, const std::vector<Reference>&, const Markers&, double, bool, double, int*, std::vector<double*>&, double*, int)::<lambda(std::size_t, std::size_t)>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/parallelize.hpp:37:53: required from 'void raticate::parallelize(std::size_t, Function, std::size_t) [with Data = double; Index = int; Function = singlepp::annotate_cells_simple(const tatami::Matrix<double, int>*, std::size_t, const int*, const std::vector<Reference>&, const Markers&, double, bool, double, int*, std::vector<double*>&, double*, int)::<lambda(std::size_t, std::size_t)>; std::size_t = long long unsigned int]'
utils.h:17:39: required from 'void parallelize(std::size_t, Function, int) [with Function = singlepp::annotate_cells_simple(const tatami::Matrix<double, int>*, std::size_t, const int*, const std::vector<Reference>&, const Markers&, double, bool, double, int*, std::vector<double*>&, double*, int)::<lambda(std::size_t, std::size_t)>; std::size_t = long long unsigned int]'
../inst/include/singlepp/annotate_cells.hpp:64:29: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:187:24: warning: comparison of integer expressions of different signedness: 'R_xlen_t' {aka 'long long int'} and 'std::size_t' {aka 'long long unsigned int'} [-Wsign-compare]
187 | if (obj.size() != last - first) {
| ~~~~~~~~~~~^~~~~~~~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp: In instantiation of 'void raticate::UnknownMatrixCore<Data, Index>::check_quick_dense_dims(const Object&, std::size_t, std::size_t) const [with Object = Rcpp::Vector<13>; Data = double; Index = int; std::size_t = long long unsigned int]':
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:205:35: required from 'void raticate::UnknownMatrixCore<Data, Index>::quick_dense_extractor_raw(std::size_t, Data*, std::size_t, std::size_t) const [with bool byrow = true; Data = double; Index = int; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:443:73: required from 'void raticate::UnknownEvaluator<Data, Index>::harvest() [with Data = double; Index = int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:554:31: required from 'void raticate::ParallelCoordinator::run(std::size_t, Function, std::size_t) [with Data = double; Index = int; Function = singlepp::annotate_cells_simple(const tatami::Matrix<double, int>*, std::size_t, const int*, const std::vector<Reference>&, const Markers&, double, bool, double, int*, std::vector<double*>&, double*, int)::<lambda(std::size_t, std::size_t)>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/parallelize.hpp:37:53: required from 'void raticate::parallelize(std::size_t, Function, std::size_t) [with Data = double; Index = int; Function = singlepp::annotate_cells_simple(const tatami::Matrix<double, int>*, std::size_t, const int*, const std::vector<Reference>&, const Markers&, double, bool, double, int*, std::vector<double*>&, double*, int)::<lambda(std::size_t, std::size_t)>; std::size_t = long long unsigned int]'
utils.h:17:39: required from 'void parallelize(std::size_t, Function, int) [with Function = singlepp::annotate_cells_simple(const tatami::Matrix<double, int>*, std::size_t, const int*, const std::vector<Reference>&, const Markers&, double, bool, double, int*, std::vector<double*>&, double*, int)::<lambda(std::size_t, std::size_t)>; std::size_t = long long unsigned int]'
../inst/include/singlepp/annotate_cells.hpp:64:29: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:187:24: warning: comparison of integer expressions of different signedness: 'R_xlen_t' {aka 'long long int'} and 'std::size_t' {aka 'long long unsigned int'} [-Wsign-compare]
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp: In instantiation of 'void raticate::UnknownMatrixCore<Data, Index>::check_quick_dense_dims(const Object&, std::size_t, std::size_t) const [with Object = Rcpp::Vector<14, Rcpp::PreserveStorage>; Data = double; Index = int; std::size_t = long long unsigned int]':
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:210:35: required from 'void raticate::UnknownMatrixCore<Data, Index>::quick_dense_extractor_raw(std::size_t, Data*, std::size_t, std::size_t) const [with bool byrow = true; Data = double; Index = int; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:443:73: required from 'void raticate::UnknownEvaluator<Data, Index>::harvest() [with Data = double; Index = int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:554:31: required from 'void raticate::ParallelCoordinator::run(std::size_t, Function, std::size_t) [with Data = double; Index = int; Function = singlepp::annotate_cells_simple(const tatami::Matrix<double, int>*, std::size_t, const int*, const std::vector<Reference>&, const Markers&, double, bool, double, int*, std::vector<double*>&, double*, int)::<lambda(std::size_t, std::size_t)>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/parallelize.hpp:37:53: required from 'void raticate::parallelize(std::size_t, Function, std::size_t) [with Data = double; Index = int; Function = singlepp::annotate_cells_simple(const tatami::Matrix<double, int>*, std::size_t, const int*, const std::vector<Reference>&, const Markers&, double, bool, double, int*, std::vector<double*>&, double*, int)::<lambda(std::size_t, std::size_t)>; std::size_t = long long unsigned int]'
utils.h:17:39: required from 'void parallelize(std::size_t, Function, int) [with Function = singlepp::annotate_cells_simple(const tatami::Matrix<double, int>*, std::size_t, const int*, const std::vector<Reference>&, const Markers&, double, bool, double, int*, std::vector<double*>&, double*, int)::<lambda(std::size_t, std::size_t)>; std::size_t = long long unsigned int]'
../inst/include/singlepp/annotate_cells.hpp:64:29: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:187:24: warning: comparison of integer expressions of different signedness: 'R_xlen_t' {aka 'long long int'} and 'std::size_t' {aka 'long long unsigned int'} [-Wsign-compare]
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp: In instantiation of 'void raticate::UnknownMatrixCore<Data, Index>::check_quick_sparse_dims(const Object&, std::size_t) const [with Object = Rcpp::Vector<10, Rcpp::PreserveStorage>; Data = double; Index = int; std::size_t = long long unsigned int]':
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:298:36: required from 'void raticate::UnknownMatrixCore<Data, Index>::quick_sparse_extractor_raw(std::size_t, std::size_t*, Data*, Index*, std::size_t, std::size_t) const [with bool byrow = true; Data = double; Index = int; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:457:74: required from 'void raticate::UnknownEvaluator<Data, Index>::harvest() [with Data = double; Index = int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:554:31: required from 'void raticate::ParallelCoordinator::run(std::size_t, Function, std::size_t) [with Data = double; Index = int; Function = singlepp::annotate_cells_simple(const tatami::Matrix<double, int>*, std::size_t, const int*, const std::vector<Reference>&, const Markers&, double, bool, double, int*, std::vector<double*>&, double*, int)::<lambda(std::size_t, std::size_t)>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/parallelize.hpp:37:53: required from 'void raticate::parallelize(std::size_t, Function, std::size_t) [with Data = double; Index = int; Function = singlepp::annotate_cells_simple(const tatami::Matrix<double, int>*, std::size_t, const int*, const std::vector<Reference>&, const Markers&, double, bool, double, int*, std::vector<double*>&, double*, int)::<lambda(std::size_t, std::size_t)>; std::size_t = long long unsigned int]'
utils.h:17:39: required from 'void parallelize(std::size_t, Function, int) [with Function = singlepp::annotate_cells_simple(const tatami::Matrix<double, int>*, std::size_t, const int*, const std::vector<Reference>&, const Markers&, double, bool, double, int*, std::vector<double*>&, double*, int)::<lambda(std::size_t, std::size_t)>; std::size_t = long long unsigned int]'
../inst/include/singlepp/annotate_cells.hpp:64:29: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:246:24: warning: comparison of integer expressions of different signedness: 'R_xlen_t' {aka 'long long int'} and 'std::size_t' {aka 'long long unsigned int'} [-Wsign-compare]
246 | if (obj.size() != nnzero) {
| ~~~~~~~~~~~^~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp: In instantiation of 'void raticate::UnknownMatrixCore<Data, Index>::check_quick_sparse_dims(const Object&, std::size_t) const [with Object = Rcpp::Vector<13>; Data = double; Index = int; std::size_t = long long unsigned int]':
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:303:36: required from 'void raticate::UnknownMatrixCore<Data, Index>::quick_sparse_extractor_raw(std::size_t, std::size_t*, Data*, Index*, std::size_t, std::size_t) const [with bool byrow = true; Data = double; Index = int; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:457:74: required from 'void raticate::UnknownEvaluator<Data, Index>::harvest() [with Data = double; Index = int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:554:31: required from 'void raticate::ParallelCoordinator::run(std::size_t, Function, std::size_t) [with Data = double; Index = int; Function = singlepp::annotate_cells_simple(const tatami::Matrix<double, int>*, std::size_t, const int*, const std::vector<Reference>&, const Markers&, double, bool, double, int*, std::vector<double*>&, double*, int)::<lambda(std::size_t, std::size_t)>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/parallelize.hpp:37:53: required from 'void raticate::parallelize(std::size_t, Function, std::size_t) [with Data = double; Index = int; Function = singlepp::annotate_cells_simple(const tatami::Matrix<double, int>*, std::size_t, const int*, const std::vector<Reference>&, const Markers&, double, bool, double, int*, std::vector<double*>&, double*, int)::<lambda(std::size_t, std::size_t)>; std::size_t = long long unsigned int]'
utils.h:17:39: required from 'void parallelize(std::size_t, Function, int) [with Function = singlepp::annotate_cells_simple(const tatami::Matrix<double, int>*, std::size_t, const int*, const std::vector<Reference>&, const Markers&, double, bool, double, int*, std::vector<double*>&, double*, int)::<lambda(std::size_t, std::size_t)>; std::size_t = long long unsigned int]'
../inst/include/singlepp/annotate_cells.hpp:64:29: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:246:24: warning: comparison of integer expressions of different signedness: 'R_xlen_t' {aka 'long long int'} and 'std::size_t' {aka 'long long unsigned int'} [-Wsign-compare]
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp: In instantiation of 'void raticate::UnknownMatrixCore<Data, Index>::check_quick_sparse_dims(const Object&, std::size_t) const [with Object = Rcpp::Vector<14, Rcpp::PreserveStorage>; Data = double; Index = int; std::size_t = long long unsigned int]':
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:308:36: required from 'void raticate::UnknownMatrixCore<Data, Index>::quick_sparse_extractor_raw(std::size_t, std::size_t*, Data*, Index*, std::size_t, std::size_t) const [with bool byrow = true; Data = double; Index = int; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:457:74: required from 'void raticate::UnknownEvaluator<Data, Index>::harvest() [with Data = double; Index = int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:554:31: required from 'void raticate::ParallelCoordinator::run(std::size_t, Function, std::size_t) [with Data = double; Index = int; Function = singlepp::annotate_cells_simple(const tatami::Matrix<double, int>*, std::size_t, const int*, const std::vector<Reference>&, const Markers&, double, bool, double, int*, std::vector<double*>&, double*, int)::<lambda(std::size_t, std::size_t)>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/parallelize.hpp:37:53: required from 'void raticate::parallelize(std::size_t, Function, std::size_t) [with Data = double; Index = int; Function = singlepp::annotate_cells_simple(const tatami::Matrix<double, int>*, std::size_t, const int*, const std::vector<Reference>&, const Markers&, double, bool, double, int*, std::vector<double*>&, double*, int)::<lambda(std::size_t, std::size_t)>; std::size_t = long long unsigned int]'
utils.h:17:39: required from 'void parallelize(std::size_t, Function, int) [with Function = singlepp::annotate_cells_simple(const tatami::Matrix<double, int>*, std::size_t, const int*, const std::vector<Reference>&, const Markers&, double, bool, double, int*, std::vector<double*>&, double*, int)::<lambda(std::size_t, std::size_t)>; std::size_t = long long unsigned int]'
../inst/include/singlepp/annotate_cells.hpp:64:29: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:246:24: warning: comparison of integer expressions of different signedness: 'R_xlen_t' {aka 'long long int'} and 'std::size_t' {aka 'long long unsigned int'} [-Wsign-compare]
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp: In instantiation of 'void tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::secondary_dimension(IDX, std::size_t, std::size_t, tatami::Workspace*, STORE&) const [with STORE = tatami::CompressedSparseMatrix<false, double, int, tatami::ArrayView<int>, tatami::ArrayView<int>, tatami::ArrayView<int> >::expanded_store; bool ROW = false; T = double; IDX = int; U = tatami::ArrayView<int>; V = tatami::ArrayView<int>; W = tatami::ArrayView<int>; std::size_t = long long unsigned int]':
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:380:28: required from 'void tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::secondary_dimension_expanded(IDX, std::size_t, std::size_t, tatami::Workspace*, T*, T) const [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView<int>; V = tatami::ArrayView<int>; W = tatami::ArrayView<int>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:79:13: required from 'const T* tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::row(std::size_t, T*, std::size_t, std::size_t, tatami::Workspace*) const [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView<int>; V = tatami::ArrayView<int>; W = tatami::ArrayView<int>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:75:14: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:312:23: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
312 | if (i == prev_i + 1) {
| ~~^~~~~~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:317:34: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
317 | } else if (i + 1 == prev_i) {
| ~~~~~~^~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:322:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
322 | } else if (i > prev_i) {
| ~~^~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:327:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
327 | } else if (i < prev_i) {
| ~~^~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp: In instantiation of 'std::pair<long long unsigned int, long long unsigned int> tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::primary_dimension(std::size_t, std::size_t, std::size_t, std::size_t) const [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView<int>; V = tatami::ArrayView<int>; W = tatami::ArrayView<int>; std::size_t = long long unsigned int]':
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:226:25: required from 'void tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::primary_dimension_expanded(std::size_t, std::size_t, std::size_t, std::size_t, T*, T) const [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView<int>; V = tatami::ArrayView<int>; W = tatami::ArrayView<int>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:88:13: required from 'const T* tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::column(std::size_t, T*, std::size_t, std::size_t, tatami::Workspace*) const [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView<int>; V = tatami::ArrayView<int>; W = tatami::ArrayView<int>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:84:14: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:188:14: warning: unused variable 'xIt' [-Wunused-variable]
188 | auto xIt = values.begin() + pstart;
| ^~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp: In instantiation of 'void tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::secondary_dimension(IDX, std::size_t, std::size_t, tatami::Workspace*, STORE&) const [with STORE = tatami::CompressedSparseMatrix<false, double, int, tatami::ArrayView<int>, tatami::ArrayView<int>, tatami::ArrayView<int> >::raw_store; bool ROW = false; T = double; IDX = int; U = tatami::ArrayView<int>; V = tatami::ArrayView<int>; W = tatami::ArrayView<int>; std::size_t = long long unsigned int]':
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:362:28: required from 'tatami::SparseRange<T, IDX> tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::secondary_dimension_raw(IDX, std::size_t, std::size_t, tatami::Workspace*, T*, IDX*) const [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView<int>; V = tatami::ArrayView<int>; W = tatami::ArrayView<int>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:106:20: required from 'tatami::SparseRange<T, IDX> tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::sparse_row(std::size_t, T*, IDX*, std::size_t, std::size_t, tatami::Workspace*, bool) const [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView<int>; V = tatami::ArrayView<int>; W = tatami::ArrayView<int>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:101:25: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:312:23: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
312 | if (i == prev_i + 1) {
| ~~^~~~~~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:317:34: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
317 | } else if (i + 1 == prev_i) {
| ~~~~~~^~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:322:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
322 | } else if (i > prev_i) {
| ~~^~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:327:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
327 | } else if (i < prev_i) {
| ~~^~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp: In instantiation of 'void tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::secondary_dimension(IDX, std::size_t, std::size_t, tatami::Workspace*, STORE&) const [with STORE = tatami::CompressedSparseMatrix<false, double, int, tatami::ArrayView<double>, tatami::ArrayView<int>, tatami::ArrayView<int> >::expanded_store; bool ROW = false; T = double; IDX = int; U = tatami::ArrayView<double>; V = tatami::ArrayView<int>; W = tatami::ArrayView<int>; std::size_t = long long unsigned int]':
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:380:28: required from 'void tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::secondary_dimension_expanded(IDX, std::size_t, std::size_t, tatami::Workspace*, T*, T) const [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView<double>; V = tatami::ArrayView<int>; W = tatami::ArrayView<int>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:79:13: required from 'const T* tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::row(std::size_t, T*, std::size_t, std::size_t, tatami::Workspace*) const [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView<double>; V = tatami::ArrayView<int>; W = tatami::ArrayView<int>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:75:14: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:312:23: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
312 | if (i == prev_i + 1) {
| ~~^~~~~~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:317:34: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
317 | } else if (i + 1 == prev_i) {
| ~~~~~~^~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:322:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
322 | } else if (i > prev_i) {
| ~~^~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:327:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
327 | } else if (i < prev_i) {
| ~~^~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp: In instantiation of 'std::pair<long long unsigned int, long long unsigned int> tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::primary_dimension(std::size_t, std::size_t, std::size_t, std::size_t) const [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView<double>; V = tatami::ArrayView<int>; W = tatami::ArrayView<int>; std::size_t = long long unsigned int]':
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:226:25: required from 'void tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::primary_dimension_expanded(std::size_t, std::size_t, std::size_t, std::size_t, T*, T) const [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView<double>; V = tatami::ArrayView<int>; W = tatami::ArrayView<int>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:88:13: required from 'const T* tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::column(std::size_t, T*, std::size_t, std::size_t, tatami::Workspace*) const [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView<double>; V = tatami::ArrayView<int>; W = tatami::ArrayView<int>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:84:14: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:188:14: warning: unused variable 'xIt' [-Wunused-variable]
188 | auto xIt = values.begin() + pstart;
| ^~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp: In instantiation of 'void tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::secondary_dimension(IDX, std::size_t, std::size_t, tatami::Workspace*, STORE&) const [with STORE = tatami::CompressedSparseMatrix<false, double, int, tatami::ArrayView<double>, tatami::ArrayView<int>, tatami::ArrayView<int> >::raw_store; bool ROW = false; T = double; IDX = int; U = tatami::ArrayView<double>; V = tatami::ArrayView<int>; W = tatami::ArrayView<int>; std::size_t = long long unsigned int]':
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:362:28: required from 'tatami::SparseRange<T, IDX> tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::secondary_dimension_raw(IDX, std::size_t, std::size_t, tatami::Workspace*, T*, IDX*) const [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView<double>; V = tatami::ArrayView<int>; W = tatami::ArrayView<int>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:106:20: required from 'tatami::SparseRange<T, IDX> tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::sparse_row(std::size_t, T*, IDX*, std::size_t, std::size_t, tatami::Workspace*, bool) const [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView<double>; V = tatami::ArrayView<int>; W = tatami::ArrayView<int>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:101:25: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:312:23: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
312 | if (i == prev_i + 1) {
| ~~^~~~~~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:317:34: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
317 | } else if (i + 1 == prev_i) {
| ~~~~~~^~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:322:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
322 | } else if (i > prev_i) {
| ~~^~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:327:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
327 | } else if (i < prev_i) {
| ~~^~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp: In instantiation of 'void tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::secondary_dimension(IDX, std::size_t, std::size_t, tatami::Workspace*, STORE&) const [with STORE = tatami::CompressedSparseMatrix<false, double, int, std::vector<int>, std::vector<int>, std::vector<long long unsigned int> >::expanded_store; bool ROW = false; T = double; IDX = int; U = std::vector<int>; V = std::vector<int>; W = std::vector<long long unsigned int>; std::size_t = long long unsigned int]':
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:380:28: required from 'void tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::secondary_dimension_expanded(IDX, std::size_t, std::size_t, tatami::Workspace*, T*, T) const [with bool ROW = false; T = double; IDX = int; U = std::vector<int>; V = std::vector<int>; W = std::vector<long long unsigned int>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:79:13: required from 'const T* tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::row(std::size_t, T*, std::size_t, std::size_t, tatami::Workspace*) const [with bool ROW = false; T = double; IDX = int; U = std::vector<int>; V = std::vector<int>; W = std::vector<long long unsigned int>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:75:14: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:312:23: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
312 | if (i == prev_i + 1) {
| ~~^~~~~~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:317:34: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
317 | } else if (i + 1 == prev_i) {
| ~~~~~~^~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:322:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
322 | } else if (i > prev_i) {
| ~~^~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:327:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
327 | } else if (i < prev_i) {
| ~~^~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp: In instantiation of 'std::pair<long long unsigned int, long long unsigned int> tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::primary_dimension(std::size_t, std::size_t, std::size_t, std::size_t) const [with bool ROW = false; T = double; IDX = int; U = std::vector<int>; V = std::vector<int>; W = std::vector<long long unsigned int>; std::size_t = long long unsigned int]':
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:226:25: required from 'void tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::primary_dimension_expanded(std::size_t, std::size_t, std::size_t, std::size_t, T*, T) const [with bool ROW = false; T = double; IDX = int; U = std::vector<int>; V = std::vector<int>; W = std::vector<long long unsigned int>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:88:13: required from 'const T* tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::column(std::size_t, T*, std::size_t, std::size_t, tatami::Workspace*) const [with bool ROW = false; T = double; IDX = int; U = std::vector<int>; V = std::vector<int>; W = std::vector<long long unsigned int>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:84:14: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:188:14: warning: variable 'xIt' set but not used [-Wunused-but-set-variable]
188 | auto xIt = values.begin() + pstart;
| ^~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp: In instantiation of 'void tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::secondary_dimension(IDX, std::size_t, std::size_t, tatami::Workspace*, STORE&) const [with STORE = tatami::CompressedSparseMatrix<false, double, int, std::vector<int>, std::vector<int>, std::vector<long long unsigned int> >::raw_store; bool ROW = false; T = double; IDX = int; U = std::vector<int>; V = std::vector<int>; W = std::vector<long long unsigned int>; std::size_t = long long unsigned int]':
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:362:28: required from 'tatami::SparseRange<T, IDX> tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::secondary_dimension_raw(IDX, std::size_t, std::size_t, tatami::Workspace*, T*, IDX*) const [with bool ROW = false; T = double; IDX = int; U = std::vector<int>; V = std::vector<int>; W = std::vector<long long unsigned int>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:106:20: required from 'tatami::SparseRange<T, IDX> tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::sparse_row(std::size_t, T*, IDX*, std::size_t, std::size_t, tatami::Workspace*, bool) const [with bool ROW = false; T = double; IDX = int; U = std::vector<int>; V = std::vector<int>; W = std::vector<long long unsigned int>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:101:25: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:312:23: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
312 | if (i == prev_i + 1) {
| ~~^~~~~~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:317:34: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
317 | } else if (i + 1 == prev_i) {
| ~~~~~~^~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:322:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
322 | } else if (i > prev_i) {
| ~~^~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:327:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
327 | } else if (i < prev_i) {
| ~~^~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp: In instantiation of 'void tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::secondary_dimension(IDX, std::size_t, std::size_t, tatami::Workspace*, STORE&) const [with STORE = tatami::CompressedSparseMatrix<false, double, int, std::vector<double>, std::vector<int>, std::vector<long long unsigned int> >::expanded_store; bool ROW = false; T = double; IDX = int; U = std::vector<double>; V = std::vector<int>; W = std::vector<long long unsigned int>; std::size_t = long long unsigned int]':
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:380:28: required from 'void tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::secondary_dimension_expanded(IDX, std::size_t, std::size_t, tatami::Workspace*, T*, T) const [with bool ROW = false; T = double; IDX = int; U = std::vector<double>; V = std::vector<int>; W = std::vector<long long unsigned int>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:79:13: required from 'const T* tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::row(std::size_t, T*, std::size_t, std::size_t, tatami::Workspace*) const [with bool ROW = false; T = double; IDX = int; U = std::vector<double>; V = std::vector<int>; W = std::vector<long long unsigned int>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:75:14: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:312:23: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
312 | if (i == prev_i + 1) {
| ~~^~~~~~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:317:34: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
317 | } else if (i + 1 == prev_i) {
| ~~~~~~^~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:322:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
322 | } else if (i > prev_i) {
| ~~^~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:327:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
327 | } else if (i < prev_i) {
| ~~^~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp: In instantiation of 'std::pair<long long unsigned int, long long unsigned int> tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::primary_dimension(std::size_t, std::size_t, std::size_t, std::size_t) const [with bool ROW = false; T = double; IDX = int; U = std::vector<double>; V = std::vector<int>; W = std::vector<long long unsigned int>; std::size_t = long long unsigned int]':
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:226:25: required from 'void tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::primary_dimension_expanded(std::size_t, std::size_t, std::size_t, std::size_t, T*, T) const [with bool ROW = false; T = double; IDX = int; U = std::vector<double>; V = std::vector<int>; W = std::vector<long long unsigned int>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:88:13: required from 'const T* tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::column(std::size_t, T*, std::size_t, std::size_t, tatami::Workspace*) const [with bool ROW = false; T = double; IDX = int; U = std::vector<double>; V = std::vector<int>; W = std::vector<long long unsigned int>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:84:14: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:188:14: warning: variable 'xIt' set but not used [-Wunused-but-set-variable]
188 | auto xIt = values.begin() + pstart;
| ^~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp: In instantiation of 'void tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::secondary_dimension(IDX, std::size_t, std::size_t, tatami::Workspace*, STORE&) const [with STORE = tatami::CompressedSparseMatrix<false, double, int, std::vector<double>, std::vector<int>, std::vector<long long unsigned int> >::raw_store; bool ROW = false; T = double; IDX = int; U = std::vector<double>; V = std::vector<int>; W = std::vector<long long unsigned int>; std::size_t = long long unsigned int]':
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:362:28: required from 'tatami::SparseRange<T, IDX> tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::secondary_dimension_raw(IDX, std::size_t, std::size_t, tatami::Workspace*, T*, IDX*) const [with bool ROW = false; T = double; IDX = int; U = std::vector<double>; V = std::vector<int>; W = std::vector<long long unsigned int>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:106:20: required from 'tatami::SparseRange<T, IDX> tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::sparse_row(std::size_t, T*, IDX*, std::size_t, std::size_t, tatami::Workspace*, bool) const [with bool ROW = false; T = double; IDX = int; U = std::vector<double>; V = std::vector<int>; W = std::vector<long long unsigned int>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:101:25: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:312:23: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
312 | if (i == prev_i + 1) {
| ~~^~~~~~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:317:34: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
317 | } else if (i + 1 == prev_i) {
| ~~~~~~^~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:322:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
322 | } else if (i > prev_i) {
| ~~^~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:327:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
327 | } else if (i < prev_i) {
| ~~^~~~~~~~
g++ -std=gnu++17 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I../inst/include/ -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/BiocNeighbors/include' -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c integrate_run.cpp -o integrate_run.o
In file included from F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/stats/sums.hpp:5,
from F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/tatami.h:19,
from F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/tatami.hpp:4,
from F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/utils.hpp:15,
from F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/SimpleMatrix.hpp:4,
from F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/raticate.hpp:5,
from utils.h:13,
from integrate_run.cpp:3:
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/stats/apply.hpp:220: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
220 | #pragma omp parallel
|
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/stats/apply.hpp:234: warning: ignoring '#pragma omp for' [-Wunknown-pragmas]
234 | #pragma omp for schedule(static)
|
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/stats/apply.hpp:267: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
267 | #pragma omp parallel
|
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/stats/apply.hpp:278: warning: ignoring '#pragma omp for' [-Wunknown-pragmas]
278 | #pragma omp for schedule(static)
|
In file included from F:/biocbuild/bbs-3.17-bioc/R/library/BiocNeighbors/include/kmeans/Kmeans.hpp:5,
from F:/biocbuild/bbs-3.17-bioc/R/library/BiocNeighbors/include/knncolle/Kmknn/Kmknn.hpp:7,
from F:/biocbuild/bbs-3.17-bioc/R/library/BiocNeighbors/include/knncolle/knncolle.hpp:8,
from ../inst/include/singlepp/build_indices.hpp:8,
from ../inst/include/singlepp/BasicBuilder.hpp:5,
from ../inst/include/singlepp/Classifier.hpp:5,
from ../inst/include/singlepp/singlepp.hpp:10,
from utils.h:24:
F:/biocbuild/bbs-3.17-bioc/R/library/BiocNeighbors/include/kmeans/HartiganWong.hpp:163: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
163 | #pragma omp parallel for
|
In file included from F:/biocbuild/bbs-3.17-bioc/R/library/BiocNeighbors/include/kmeans/Kmeans.hpp:6:
F:/biocbuild/bbs-3.17-bioc/R/library/BiocNeighbors/include/kmeans/InitializeKmeansPP.hpp:77: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
77 | #pragma omp parallel for
|
In file included from F:/biocbuild/bbs-3.17-bioc/R/library/BiocNeighbors/include/knncolle/knncolle.hpp:19:
F:/biocbuild/bbs-3.17-bioc/R/library/BiocNeighbors/include/knncolle/utils/find_nearest_neighbors.hpp:49: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
49 | #pragma omp parallel for
|
F:/biocbuild/bbs-3.17-bioc/R/library/BiocNeighbors/include/knncolle/utils/find_nearest_neighbors.hpp:92: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
92 | #pragma omp parallel for
|
In file included from ../inst/include/singlepp/annotate_cells.hpp:9,
from ../inst/include/singlepp/BasicScorer.hpp:5,
from ../inst/include/singlepp/Classifier.hpp:6:
../inst/include/singlepp/fine_tune.hpp: In function 'std::pair<int, double> singlepp::fill_labels_in_use(const std::vector<double>&, double, std::vector<int>&)':
../inst/include/singlepp/fine_tune.hpp:30:15: warning: comparison of integer expressions of different signedness: 'std::size_t' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
30 | if (i != best_label && next_score < val) {
| ~~^~~~~~~~~~~~~
../inst/include/singlepp/fine_tune.hpp: In function 'std::pair<int, double> singlepp::replace_labels_in_use(const std::vector<double>&, double, std::vector<int>&)':
../inst/include/singlepp/fine_tune.hpp:56:15: warning: comparison of integer expressions of different signedness: 'std::size_t' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
56 | if (i != best_index && next_score < val) {
| ~~^~~~~~~~~~~~~
In file included from ../inst/include/singlepp/IntegratedScorer.hpp:8,
from ../inst/include/singlepp/singlepp.hpp:12:
../inst/include/singlepp/IntegratedBuilder.hpp: In member function 'std::vector<singlepp::IntegratedReference> singlepp::IntegratedBuilder::finish()':
../inst/include/singlepp/IntegratedBuilder.hpp:438:36: warning: comparison of integer expressions of different signedness: 'const int' and 'std::size_t' {aka 'long long unsigned int'} [-Wsign-compare]
438 | if (it->second < first) {
| ~~~~~~~~~~~^~~~~~~
../inst/include/singlepp/IntegratedBuilder.hpp:441:36: warning: comparison of integer expressions of different signedness: 'const int' and 'std::size_t' {aka 'long long unsigned int'} [-Wsign-compare]
441 | if (it->second > last) {
| ~~~~~~~~~~~^~~~~~
integrate_run.cpp: In function 'SEXPREC* integrate_run(Rcpp::RObject, Rcpp::List, SEXP, double, int)':
integrate_run.cpp:18:26: warning: comparison of integer expressions of different signedness: 'std::size_t' {aka 'long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare]
18 | for (size_t r = 0; r < results.size(); ++r) {
| ~~^~~~~~~~~~~~~~~~
integrate_run.cpp:24:26: warning: comparison of integer expressions of different signedness: 'std::size_t' {aka 'long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare]
24 | for (size_t r = 0; r < results.size(); ++r) {
| ~~^~~~~~~~~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/BiocNeighbors/include/knncolle/Kmknn/Kmknn.hpp: In instantiation of 'knncolle::Kmknn<DISTANCE, INDEX_t, DISTANCE_t, QUERY_t, INTERNAL_t>::Kmknn(INDEX_t, INDEX_t, const INPUT_t*, double) [with INPUT_t = double; DISTANCE = knncolle::distances::Euclidean; INDEX_t = int; DISTANCE_t = double; QUERY_t = double; INTERNAL_t = double]':
../inst/include/singlepp/BasicBuilder.hpp:103:127: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/BiocNeighbors/include/knncolle/Kmknn/Kmknn.hpp:116:31: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
116 | for (INDEX_t i = 1; i < ncenters; ++i) {
| ~~^~~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/BiocNeighbors/include/knncolle/Kmknn/Kmknn.hpp:133:35: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
133 | for (INDEX_t c = 0; c < ncenters; ++c) {
| ~~^~~~~~~~~~
../inst/include/singlepp/fine_tune.hpp: In instantiation of 'std::pair<int, double> singlepp::FineTuner::run(singlepp::RankedVector<double, int>&, const std::vector<singlepp::Reference>&, const singlepp::Markers&, std::vector<double>&, double, double) [with bool test = false; singlepp::RankedVector<double, int> = std::vector<std::pair<double, int>, std::allocator<std::pair<double, int> > >; singlepp::Markers = std::vector<std::vector<std::vector<int> > >]':
../inst/include/singlepp/annotate_cells.hpp:120:36: required from here
../inst/include/singlepp/fine_tune.hpp:136:24: warning: unused variable 'NR' [-Wunused-variable]
136 | size_t NR = curref.index->ndim();
| ^~
In file included from ../inst/include/singlepp/singlepp.hpp:15:
../inst/include/singlepp/load_references.hpp: In instantiation of 'singlepp::Markers singlepp::load_markers_internal(std::size_t, std::size_t, Reader&) [with Reader = byteme::RawFileReader; Markers = std::vector<std::vector<std::vector<int> > >; std::size_t = long long unsigned int]':
../inst/include/singlepp/load_references.hpp:598:33: required from here
../inst/include/singlepp/load_references.hpp:490:10: warning: unused variable 'continuing' [-Wunused-variable]
490 | bool continuing = false;
| ^~~~~~~~~~
In file included from F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/raticate.hpp:11:
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/DelayedAbind.hpp: In instantiation of 'raticate::Parsed<Data, Index> raticate::parse_DelayedAbind(Rcpp::RObject) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]':
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/raticate.hpp:76:53: required from 'raticate::Parsed<Data, Index> raticate::parse(Rcpp::RObject, bool) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]'
integrate_run.cpp:12:48: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/DelayedAbind.hpp:19:26: warning: comparison of integer expressions of different signedness: 'std::size_t' {aka 'long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare]
19 | for (size_t s = 0; s < seeds.size(); ++s) {
| ~~^~~~~~~~~~~~~~
In file included from F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/raticate.hpp:6:
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/SparseArraySeed.hpp: In instantiation of 'raticate::Parsed<Data, Index> raticate::parse_SparseArraySeed(Rcpp::RObject, const V&) [with Data = double; Index = int; V = Rcpp::Vector<14, Rcpp::PreserveStorage>; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]':
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/SparseArraySeed.hpp:113:52: required from 'raticate::Parsed<Data, Index> raticate::parse_SparseArraySeed(Rcpp::RObject) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/raticate.hpp:61:56: required from 'raticate::Parsed<Data, Index> raticate::parse(Rcpp::RObject, bool) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]'
integrate_run.cpp:12:48: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/SparseArraySeed.hpp:23:13: warning: comparison of integer expressions of different signedness: 'const std::size_t' {aka 'const long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare]
23 | if (nnz != val.size()) {
| ~~~~^~~~~~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/SparseArraySeed.hpp: In instantiation of 'raticate::Parsed<Data, Index> raticate::parse_SparseArraySeed(Rcpp::RObject, const V&) [with Data = double; Index = int; V = Rcpp::Vector<13>; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]':
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/SparseArraySeed.hpp:116:52: required from 'raticate::Parsed<Data, Index> raticate::parse_SparseArraySeed(Rcpp::RObject) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/raticate.hpp:61:56: required from 'raticate::Parsed<Data, Index> raticate::parse(Rcpp::RObject, bool) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]'
integrate_run.cpp:12:48: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/SparseArraySeed.hpp:23:13: warning: comparison of integer expressions of different signedness: 'const std::size_t' {aka 'const long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare]
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/SparseArraySeed.hpp: In instantiation of 'raticate::Parsed<Data, Index> raticate::parse_SparseArraySeed(Rcpp::RObject, const V&) [with Data = double; Index = int; V = Rcpp::Vector<10, Rcpp::PreserveStorage>; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]':
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/SparseArraySeed.hpp:119:52: required from 'raticate::Parsed<Data, Index> raticate::parse_SparseArraySeed(Rcpp::RObject) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/raticate.hpp:61:56: required from 'raticate::Parsed<Data, Index> raticate::parse(Rcpp::RObject, bool) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]'
integrate_run.cpp:12:48: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/SparseArraySeed.hpp:23:13: warning: comparison of integer expressions of different signedness: 'const std::size_t' {aka 'const long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare]
F:/biocbuild/bbs-3.17-bioc/R/library/BiocNeighbors/include/kmeans/InitializeKmeansPP.hpp: In instantiation of 'std::vector<IDX> kmeans::InitializeKmeansPP<DATA_t, CLUSTER_t, INDEX_t>::run(int, INDEX_t, const DATA_t*, CLUSTER_t) [with DATA_t = double; CLUSTER_t = int; INDEX_t = int]':
F:/biocbuild/bbs-3.17-bioc/R/library/BiocNeighbors/include/kmeans/InitializeKmeansPP.hpp:136:25: required from 'CLUSTER_t kmeans::InitializeKmeansPP<DATA_t, CLUSTER_t, INDEX_t>::run(int, INDEX_t, const DATA_t*, CLUSTER_t, DATA_t*, CLUSTER_t*) [with DATA_t = double; CLUSTER_t = int; INDEX_t = int]'
F:/biocbuild/bbs-3.17-bioc/R/library/BiocNeighbors/include/kmeans/Kmeans.hpp:91:32: required from 'kmeans::Details<DATA_t, INDEX_t> kmeans::Kmeans<DATA_t, CLUSTER_t, INDEX_t>::run(int, INDEX_t, const DATA_t*, CLUSTER_t, DATA_t*, CLUSTER_t*, kmeans::Initialize<DATA_t, CLUSTER_t, INDEX_t>*, kmeans::Refine<DATA_t, CLUSTER_t, INDEX_t>*) [with DATA_t = double; CLUSTER_t = int; INDEX_t = int]'
F:/biocbuild/bbs-3.17-bioc/R/library/BiocNeighbors/include/knncolle/Kmknn/Kmknn.hpp:106:60: required from 'knncolle::Kmknn<DISTANCE, INDEX_t, DISTANCE_t, QUERY_t, INTERNAL_t>::Kmknn(INDEX_t, INDEX_t, const INPUT_t*, double) [with INPUT_t = double; DISTANCE = knncolle::distances::Euclidean; INDEX_t = int; DISTANCE_t = double; QUERY_t = double; INTERNAL_t = double]'
../inst/include/singlepp/BasicBuilder.hpp:103:127: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/BiocNeighbors/include/kmeans/InitializeKmeansPP.hpp:73:21: warning: variable 'counter' set but not used [-Wunused-but-set-variable]
73 | INDEX_t counter = 0;
| ^~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/BiocNeighbors/include/kmeans/HartiganWong.hpp: In instantiation of 'void kmeans::HartiganWong<DATA_t, CLUSTER_t, INDEX_t>::optimal_transfer(INDEX_t&) [with DATA_t = double; CLUSTER_t = int; INDEX_t = int]':
F:/biocbuild/bbs-3.17-bioc/R/library/BiocNeighbors/include/kmeans/HartiganWong.hpp:235:13: required from 'kmeans::Details<DATA_t, INDEX_t> kmeans::HartiganWong<DATA_t, CLUSTER_t, INDEX_t>::run(int, INDEX_t, const DATA_t*, CLUSTER_t, DATA_t*, CLUSTER_t*) [with DATA_t = double; CLUSTER_t = int; INDEX_t = int]'
F:/biocbuild/bbs-3.17-bioc/R/library/BiocNeighbors/include/kmeans/Kmeans.hpp:98:26: required from 'kmeans::Details<DATA_t, INDEX_t> kmeans::Kmeans<DATA_t, CLUSTER_t, INDEX_t>::run(int, INDEX_t, const DATA_t*, CLUSTER_t, DATA_t*, CLUSTER_t*, kmeans::Initialize<DATA_t, CLUSTER_t, INDEX_t>*, kmeans::Refine<DATA_t, CLUSTER_t, INDEX_t>*) [with DATA_t = double; CLUSTER_t = int; INDEX_t = int]'
F:/biocbuild/bbs-3.17-bioc/R/library/BiocNeighbors/include/knncolle/Kmknn/Kmknn.hpp:106:60: required from 'knncolle::Kmknn<DISTANCE, INDEX_t, DISTANCE_t, QUERY_t, INTERNAL_t>::Kmknn(INDEX_t, INDEX_t, const INPUT_t*, double) [with INPUT_t = double; DISTANCE = knncolle::distances::Euclidean; INDEX_t = int; DISTANCE_t = double; QUERY_t = double; INTERNAL_t = double]'
../inst/include/singlepp/BasicBuilder.hpp:103:127: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/BiocNeighbors/include/kmeans/HartiganWong.hpp:344:41: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
344 | if (obs >= live[l1] && obs >= live[cen] || cen == l1 || cen == ll) {
| ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
In file included from F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/tatami.h:12:
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/utils/compress_sparse_triplets.hpp: In instantiation of 'std::vector<long long unsigned int> tatami::compress_sparse_triplets(std::size_t, std::size_t, U&, V&, W&) [with bool ROW = false; U = std::vector<double>; V = std::vector<int>; W = std::vector<int>; std::size_t = long long unsigned int]':
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/SparseArraySeed.hpp:88:56: required from 'raticate::Parsed<Data, Index> raticate::parse_SparseArraySeed(Rcpp::RObject, const V&) [with Data = double; Index = int; V = Rcpp::Vector<14, Rcpp::PreserveStorage>; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/SparseArraySeed.hpp:113:52: required from 'raticate::Parsed<Data, Index> raticate::parse_SparseArraySeed(Rcpp::RObject) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/raticate.hpp:61:56: required from 'raticate::Parsed<Data, Index> raticate::parse(Rcpp::RObject, bool) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]'
integrate_run.cpp:12:48: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/utils/compress_sparse_triplets.hpp:127:28: warning: comparison of integer expressions of different signedness: '__gnu_cxx::__alloc_traits<std::allocator<long long unsigned int>, long long unsigned int>::value_type' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
127 | if (indices[i] == -1) {
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/utils/compress_sparse_triplets.hpp: In instantiation of 'std::vector<long long unsigned int> tatami::compress_sparse_triplets(std::size_t, std::size_t, U&, V&, W&) [with bool ROW = false; U = std::vector<int>; V = std::vector<int>; W = std::vector<int>; std::size_t = long long unsigned int]':
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/SparseArraySeed.hpp:88:56: required from 'raticate::Parsed<Data, Index> raticate::parse_SparseArraySeed(Rcpp::RObject, const V&) [with Data = double; Index = int; V = Rcpp::Vector<13>; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/SparseArraySeed.hpp:116:52: required from 'raticate::Parsed<Data, Index> raticate::parse_SparseArraySeed(Rcpp::RObject) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/raticate.hpp:61:56: required from 'raticate::Parsed<Data, Index> raticate::parse(Rcpp::RObject, bool) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]'
integrate_run.cpp:12:48: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/utils/compress_sparse_triplets.hpp:127:28: warning: comparison of integer expressions of different signedness: '__gnu_cxx::__alloc_traits<std::allocator<long long unsigned int>, long long unsigned int>::value_type' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
In file included from F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/tatami.h:7:
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/DelayedSubset.hpp: In instantiation of 'tatami::DelayedSubset<MARGIN, T, IDX, V>::DelayedSubset(std::shared_ptr<const tatami::Matrix<T, IDX> >, V) [with int MARGIN = 0; T = double; IDX = int; V = std::vector<int>]':
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/DelayedSubset.hpp:322:9: required from 'std::shared_ptr<_Tp> tatami::make_DelayedSubset(std::shared_ptr<_Tp>, V) [with int MARGIN = 0; MAT = Matrix<double, int>; V = std::vector<int>]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/DelayedSubset.hpp:28:48: required from 'raticate::Parsed<Data, Index> raticate::parse_DelayedSubset(Rcpp::RObject) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/raticate.hpp:72:54: required from 'raticate::Parsed<Data, Index> raticate::parse(Rcpp::RObject, bool) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]'
integrate_run.cpp:12:48: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/DelayedSubset.hpp:48:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
48 | if (chosen != indices.size()) {
| ~~~~~~~^~~~~~~~~~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/DelayedSubset.hpp: In instantiation of 'tatami::DelayedSubset<MARGIN, T, IDX, V>::DelayedSubset(std::shared_ptr<const tatami::Matrix<T, IDX> >, V) [with int MARGIN = 1; T = double; IDX = int; V = std::vector<int>]':
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/DelayedSubset.hpp:322:9: required from 'std::shared_ptr<_Tp> tatami::make_DelayedSubset(std::shared_ptr<_Tp>, V) [with int MARGIN = 1; MAT = Matrix<double, int>; V = std::vector<int>]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/DelayedSubset.hpp:38:48: required from 'raticate::Parsed<Data, Index> raticate::parse_DelayedSubset(Rcpp::RObject) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/raticate.hpp:72:54: required from 'raticate::Parsed<Data, Index> raticate::parse(Rcpp::RObject, bool) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]'
integrate_run.cpp:12:48: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/DelayedSubset.hpp:48:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
In file included from F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/tatami.h:5:
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp: In instantiation of 'void tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::check_values(bool) [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView<double>; V = tatami::ArrayView<int>; W = tatami::ArrayView<int>]':
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:55:9: required from 'tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::CompressedSparseMatrix(std::size_t, std::size_t, U, V, W, bool) [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView<double>; V = tatami::ArrayView<int>; W = tatami::ArrayView<int>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/CSparseMatrix.hpp:24:9: required from 'raticate::Parsed<Data, Index> raticate::parse_CSparseMatrix(Rcpp::RObject, const V&) [with Data = double; Index = int; V = Rcpp::Vector<14, Rcpp::PreserveStorage>; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/CSparseMatrix.hpp:40:31: required from 'raticate::Parsed<Data, Index> raticate::parse_dgCMatrix(Rcpp::RObject) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/raticate.hpp:63:50: required from 'raticate::Parsed<Data, Index> raticate::parse(Rcpp::RObject, bool) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]'
integrate_run.cpp:12:48: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:154:41: warning: comparison of integer expressions of different signedness: 'int' and 'std::size_t' {aka 'long long unsigned int'} [-Wsign-compare]
154 | if (indptrs[indptrs.size() - 1] != indices.size()) {
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:167:32: warning: comparison of integer expressions of different signedness: 'std::size_t' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
167 | while (counter < indptrs[i]) {
| ~~~~~~~~^~~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp: In instantiation of 'void tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::check_values(bool) [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView<int>; V = tatami::ArrayView<int>; W = tatami::ArrayView<int>]':
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:55:9: required from 'tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::CompressedSparseMatrix(std::size_t, std::size_t, U, V, W, bool) [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView<int>; V = tatami::ArrayView<int>; W = tatami::ArrayView<int>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/CSparseMatrix.hpp:24:9: required from 'raticate::Parsed<Data, Index> raticate::parse_CSparseMatrix(Rcpp::RObject, const V&) [with Data = double; Index = int; V = Rcpp::Vector<10, Rcpp::PreserveStorage>; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/CSparseMatrix.hpp:46:31: required from 'raticate::Parsed<Data, Index> raticate::parse_lgCMatrix(Rcpp::RObject) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/raticate.hpp:65:50: required from 'raticate::Parsed<Data, Index> raticate::parse(Rcpp::RObject, bool) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]'
integrate_run.cpp:12:48: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:154:41: warning: comparison of integer expressions of different signedness: 'int' and 'std::size_t' {aka 'long long unsigned int'} [-Wsign-compare]
154 | if (indptrs[indptrs.size() - 1] != indices.size()) {
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:167:32: warning: comparison of integer expressions of different signedness: 'std::size_t' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
167 | while (counter < indptrs[i]) {
| ~~~~~~~~^~~~~~~~~~
In file included from F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/raticate.hpp:12:
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp: In instantiation of 'void raticate::UnknownMatrixCore<Data, Index>::check_quick_dense_dims(const Object&, std::size_t, std::size_t) const [with Object = Rcpp::Vector<10, Rcpp::PreserveStorage>; Data = double; Index = int; std::size_t = long long unsigned int]':
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:200:35: required from 'void raticate::UnknownMatrixCore<Data, Index>::quick_dense_extractor_raw(std::size_t, Data*, std::size_t, std::size_t) const [with bool byrow = true; Data = double; Index = int; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:443:73: required from 'void raticate::UnknownEvaluator<Data, Index>::harvest() [with Data = double; Index = int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:554:31: required from 'void raticate::ParallelCoordinator::run(std::size_t, Function, std::size_t) [with Data = double; Index = int; Function = singlepp::annotate_cells_simple(const tatami::Matrix<double, int>*, std::size_t, const int*, const std::vector<Reference>&, const Markers&, double, bool, double, int*, std::vector<double*>&, double*, int)::<lambda(std::size_t, std::size_t)>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/parallelize.hpp:37:53: required from 'void raticate::parallelize(std::size_t, Function, std::size_t) [with Data = double; Index = int; Function = singlepp::annotate_cells_simple(const tatami::Matrix<double, int>*, std::size_t, const int*, const std::vector<Reference>&, const Markers&, double, bool, double, int*, std::vector<double*>&, double*, int)::<lambda(std::size_t, std::size_t)>; std::size_t = long long unsigned int]'
utils.h:17:39: required from 'void parallelize(std::size_t, Function, int) [with Function = singlepp::annotate_cells_simple(const tatami::Matrix<double, int>*, std::size_t, const int*, const std::vector<Reference>&, const Markers&, double, bool, double, int*, std::vector<double*>&, double*, int)::<lambda(std::size_t, std::size_t)>; std::size_t = long long unsigned int]'
../inst/include/singlepp/annotate_cells.hpp:64:29: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:187:24: warning: comparison of integer expressions of different signedness: 'R_xlen_t' {aka 'long long int'} and 'std::size_t' {aka 'long long unsigned int'} [-Wsign-compare]
187 | if (obj.size() != last - first) {
| ~~~~~~~~~~~^~~~~~~~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp: In instantiation of 'void raticate::UnknownMatrixCore<Data, Index>::check_quick_dense_dims(const Object&, std::size_t, std::size_t) const [with Object = Rcpp::Vector<13>; Data = double; Index = int; std::size_t = long long unsigned int]':
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:205:35: required from 'void raticate::UnknownMatrixCore<Data, Index>::quick_dense_extractor_raw(std::size_t, Data*, std::size_t, std::size_t) const [with bool byrow = true; Data = double; Index = int; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:443:73: required from 'void raticate::UnknownEvaluator<Data, Index>::harvest() [with Data = double; Index = int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:554:31: required from 'void raticate::ParallelCoordinator::run(std::size_t, Function, std::size_t) [with Data = double; Index = int; Function = singlepp::annotate_cells_simple(const tatami::Matrix<double, int>*, std::size_t, const int*, const std::vector<Reference>&, const Markers&, double, bool, double, int*, std::vector<double*>&, double*, int)::<lambda(std::size_t, std::size_t)>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/parallelize.hpp:37:53: required from 'void raticate::parallelize(std::size_t, Function, std::size_t) [with Data = double; Index = int; Function = singlepp::annotate_cells_simple(const tatami::Matrix<double, int>*, std::size_t, const int*, const std::vector<Reference>&, const Markers&, double, bool, double, int*, std::vector<double*>&, double*, int)::<lambda(std::size_t, std::size_t)>; std::size_t = long long unsigned int]'
utils.h:17:39: required from 'void parallelize(std::size_t, Function, int) [with Function = singlepp::annotate_cells_simple(const tatami::Matrix<double, int>*, std::size_t, const int*, const std::vector<Reference>&, const Markers&, double, bool, double, int*, std::vector<double*>&, double*, int)::<lambda(std::size_t, std::size_t)>; std::size_t = long long unsigned int]'
../inst/include/singlepp/annotate_cells.hpp:64:29: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:187:24: warning: comparison of integer expressions of different signedness: 'R_xlen_t' {aka 'long long int'} and 'std::size_t' {aka 'long long unsigned int'} [-Wsign-compare]
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp: In instantiation of 'void raticate::UnknownMatrixCore<Data, Index>::check_quick_dense_dims(const Object&, std::size_t, std::size_t) const [with Object = Rcpp::Vector<14, Rcpp::PreserveStorage>; Data = double; Index = int; std::size_t = long long unsigned int]':
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:210:35: required from 'void raticate::UnknownMatrixCore<Data, Index>::quick_dense_extractor_raw(std::size_t, Data*, std::size_t, std::size_t) const [with bool byrow = true; Data = double; Index = int; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:443:73: required from 'void raticate::UnknownEvaluator<Data, Index>::harvest() [with Data = double; Index = int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:554:31: required from 'void raticate::ParallelCoordinator::run(std::size_t, Function, std::size_t) [with Data = double; Index = int; Function = singlepp::annotate_cells_simple(const tatami::Matrix<double, int>*, std::size_t, const int*, const std::vector<Reference>&, const Markers&, double, bool, double, int*, std::vector<double*>&, double*, int)::<lambda(std::size_t, std::size_t)>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/parallelize.hpp:37:53: required from 'void raticate::parallelize(std::size_t, Function, std::size_t) [with Data = double; Index = int; Function = singlepp::annotate_cells_simple(const tatami::Matrix<double, int>*, std::size_t, const int*, const std::vector<Reference>&, const Markers&, double, bool, double, int*, std::vector<double*>&, double*, int)::<lambda(std::size_t, std::size_t)>; std::size_t = long long unsigned int]'
utils.h:17:39: required from 'void parallelize(std::size_t, Function, int) [with Function = singlepp::annotate_cells_simple(const tatami::Matrix<double, int>*, std::size_t, const int*, const std::vector<Reference>&, const Markers&, double, bool, double, int*, std::vector<double*>&, double*, int)::<lambda(std::size_t, std::size_t)>; std::size_t = long long unsigned int]'
../inst/include/singlepp/annotate_cells.hpp:64:29: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:187:24: warning: comparison of integer expressions of different signedness: 'R_xlen_t' {aka 'long long int'} and 'std::size_t' {aka 'long long unsigned int'} [-Wsign-compare]
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp: In instantiation of 'void raticate::UnknownMatrixCore<Data, Index>::check_quick_sparse_dims(const Object&, std::size_t) const [with Object = Rcpp::Vector<10, Rcpp::PreserveStorage>; Data = double; Index = int; std::size_t = long long unsigned int]':
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:298:36: required from 'void raticate::UnknownMatrixCore<Data, Index>::quick_sparse_extractor_raw(std::size_t, std::size_t*, Data*, Index*, std::size_t, std::size_t) const [with bool byrow = true; Data = double; Index = int; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:457:74: required from 'void raticate::UnknownEvaluator<Data, Index>::harvest() [with Data = double; Index = int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:554:31: required from 'void raticate::ParallelCoordinator::run(std::size_t, Function, std::size_t) [with Data = double; Index = int; Function = singlepp::annotate_cells_simple(const tatami::Matrix<double, int>*, std::size_t, const int*, const std::vector<Reference>&, const Markers&, double, bool, double, int*, std::vector<double*>&, double*, int)::<lambda(std::size_t, std::size_t)>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/parallelize.hpp:37:53: required from 'void raticate::parallelize(std::size_t, Function, std::size_t) [with Data = double; Index = int; Function = singlepp::annotate_cells_simple(const tatami::Matrix<double, int>*, std::size_t, const int*, const std::vector<Reference>&, const Markers&, double, bool, double, int*, std::vector<double*>&, double*, int)::<lambda(std::size_t, std::size_t)>; std::size_t = long long unsigned int]'
utils.h:17:39: required from 'void parallelize(std::size_t, Function, int) [with Function = singlepp::annotate_cells_simple(const tatami::Matrix<double, int>*, std::size_t, const int*, const std::vector<Reference>&, const Markers&, double, bool, double, int*, std::vector<double*>&, double*, int)::<lambda(std::size_t, std::size_t)>; std::size_t = long long unsigned int]'
../inst/include/singlepp/annotate_cells.hpp:64:29: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:246:24: warning: comparison of integer expressions of different signedness: 'R_xlen_t' {aka 'long long int'} and 'std::size_t' {aka 'long long unsigned int'} [-Wsign-compare]
246 | if (obj.size() != nnzero) {
| ~~~~~~~~~~~^~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp: In instantiation of 'void raticate::UnknownMatrixCore<Data, Index>::check_quick_sparse_dims(const Object&, std::size_t) const [with Object = Rcpp::Vector<13>; Data = double; Index = int; std::size_t = long long unsigned int]':
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:303:36: required from 'void raticate::UnknownMatrixCore<Data, Index>::quick_sparse_extractor_raw(std::size_t, std::size_t*, Data*, Index*, std::size_t, std::size_t) const [with bool byrow = true; Data = double; Index = int; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:457:74: required from 'void raticate::UnknownEvaluator<Data, Index>::harvest() [with Data = double; Index = int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:554:31: required from 'void raticate::ParallelCoordinator::run(std::size_t, Function, std::size_t) [with Data = double; Index = int; Function = singlepp::annotate_cells_simple(const tatami::Matrix<double, int>*, std::size_t, const int*, const std::vector<Reference>&, const Markers&, double, bool, double, int*, std::vector<double*>&, double*, int)::<lambda(std::size_t, std::size_t)>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/parallelize.hpp:37:53: required from 'void raticate::parallelize(std::size_t, Function, std::size_t) [with Data = double; Index = int; Function = singlepp::annotate_cells_simple(const tatami::Matrix<double, int>*, std::size_t, const int*, const std::vector<Reference>&, const Markers&, double, bool, double, int*, std::vector<double*>&, double*, int)::<lambda(std::size_t, std::size_t)>; std::size_t = long long unsigned int]'
utils.h:17:39: required from 'void parallelize(std::size_t, Function, int) [with Function = singlepp::annotate_cells_simple(const tatami::Matrix<double, int>*, std::size_t, const int*, const std::vector<Reference>&, const Markers&, double, bool, double, int*, std::vector<double*>&, double*, int)::<lambda(std::size_t, std::size_t)>; std::size_t = long long unsigned int]'
../inst/include/singlepp/annotate_cells.hpp:64:29: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:246:24: warning: comparison of integer expressions of different signedness: 'R_xlen_t' {aka 'long long int'} and 'std::size_t' {aka 'long long unsigned int'} [-Wsign-compare]
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp: In instantiation of 'void raticate::UnknownMatrixCore<Data, Index>::check_quick_sparse_dims(const Object&, std::size_t) const [with Object = Rcpp::Vector<14, Rcpp::PreserveStorage>; Data = double; Index = int; std::size_t = long long unsigned int]':
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:308:36: required from 'void raticate::UnknownMatrixCore<Data, Index>::quick_sparse_extractor_raw(std::size_t, std::size_t*, Data*, Index*, std::size_t, std::size_t) const [with bool byrow = true; Data = double; Index = int; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:457:74: required from 'void raticate::UnknownEvaluator<Data, Index>::harvest() [with Data = double; Index = int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:554:31: required from 'void raticate::ParallelCoordinator::run(std::size_t, Function, std::size_t) [with Data = double; Index = int; Function = singlepp::annotate_cells_simple(const tatami::Matrix<double, int>*, std::size_t, const int*, const std::vector<Reference>&, const Markers&, double, bool, double, int*, std::vector<double*>&, double*, int)::<lambda(std::size_t, std::size_t)>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/parallelize.hpp:37:53: required from 'void raticate::parallelize(std::size_t, Function, std::size_t) [with Data = double; Index = int; Function = singlepp::annotate_cells_simple(const tatami::Matrix<double, int>*, std::size_t, const int*, const std::vector<Reference>&, const Markers&, double, bool, double, int*, std::vector<double*>&, double*, int)::<lambda(std::size_t, std::size_t)>; std::size_t = long long unsigned int]'
utils.h:17:39: required from 'void parallelize(std::size_t, Function, int) [with Function = singlepp::annotate_cells_simple(const tatami::Matrix<double, int>*, std::size_t, const int*, const std::vector<Reference>&, const Markers&, double, bool, double, int*, std::vector<double*>&, double*, int)::<lambda(std::size_t, std::size_t)>; std::size_t = long long unsigned int]'
../inst/include/singlepp/annotate_cells.hpp:64:29: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:246:24: warning: comparison of integer expressions of different signedness: 'R_xlen_t' {aka 'long long int'} and 'std::size_t' {aka 'long long unsigned int'} [-Wsign-compare]
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp: In instantiation of 'void tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::secondary_dimension(IDX, std::size_t, std::size_t, tatami::Workspace*, STORE&) const [with STORE = tatami::CompressedSparseMatrix<false, double, int, tatami::ArrayView<int>, tatami::ArrayView<int>, tatami::ArrayView<int> >::expanded_store; bool ROW = false; T = double; IDX = int; U = tatami::ArrayView<int>; V = tatami::ArrayView<int>; W = tatami::ArrayView<int>; std::size_t = long long unsigned int]':
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:380:28: required from 'void tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::secondary_dimension_expanded(IDX, std::size_t, std::size_t, tatami::Workspace*, T*, T) const [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView<int>; V = tatami::ArrayView<int>; W = tatami::ArrayView<int>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:79:13: required from 'const T* tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::row(std::size_t, T*, std::size_t, std::size_t, tatami::Workspace*) const [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView<int>; V = tatami::ArrayView<int>; W = tatami::ArrayView<int>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:75:14: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:312:23: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
312 | if (i == prev_i + 1) {
| ~~^~~~~~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:317:34: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
317 | } else if (i + 1 == prev_i) {
| ~~~~~~^~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:322:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
322 | } else if (i > prev_i) {
| ~~^~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:327:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
327 | } else if (i < prev_i) {
| ~~^~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp: In instantiation of 'std::pair<long long unsigned int, long long unsigned int> tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::primary_dimension(std::size_t, std::size_t, std::size_t, std::size_t) const [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView<int>; V = tatami::ArrayView<int>; W = tatami::ArrayView<int>; std::size_t = long long unsigned int]':
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:226:25: required from 'void tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::primary_dimension_expanded(std::size_t, std::size_t, std::size_t, std::size_t, T*, T) const [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView<int>; V = tatami::ArrayView<int>; W = tatami::ArrayView<int>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:88:13: required from 'const T* tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::column(std::size_t, T*, std::size_t, std::size_t, tatami::Workspace*) const [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView<int>; V = tatami::ArrayView<int>; W = tatami::ArrayView<int>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:84:14: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:188:14: warning: unused variable 'xIt' [-Wunused-variable]
188 | auto xIt = values.begin() + pstart;
| ^~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp: In instantiation of 'void tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::secondary_dimension(IDX, std::size_t, std::size_t, tatami::Workspace*, STORE&) const [with STORE = tatami::CompressedSparseMatrix<false, double, int, tatami::ArrayView<int>, tatami::ArrayView<int>, tatami::ArrayView<int> >::raw_store; bool ROW = false; T = double; IDX = int; U = tatami::ArrayView<int>; V = tatami::ArrayView<int>; W = tatami::ArrayView<int>; std::size_t = long long unsigned int]':
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:362:28: required from 'tatami::SparseRange<T, IDX> tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::secondary_dimension_raw(IDX, std::size_t, std::size_t, tatami::Workspace*, T*, IDX*) const [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView<int>; V = tatami::ArrayView<int>; W = tatami::ArrayView<int>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:106:20: required from 'tatami::SparseRange<T, IDX> tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::sparse_row(std::size_t, T*, IDX*, std::size_t, std::size_t, tatami::Workspace*, bool) const [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView<int>; V = tatami::ArrayView<int>; W = tatami::ArrayView<int>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:101:25: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:312:23: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
312 | if (i == prev_i + 1) {
| ~~^~~~~~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:317:34: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
317 | } else if (i + 1 == prev_i) {
| ~~~~~~^~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:322:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
322 | } else if (i > prev_i) {
| ~~^~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:327:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
327 | } else if (i < prev_i) {
| ~~^~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp: In instantiation of 'void tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::secondary_dimension(IDX, std::size_t, std::size_t, tatami::Workspace*, STORE&) const [with STORE = tatami::CompressedSparseMatrix<false, double, int, tatami::ArrayView<double>, tatami::ArrayView<int>, tatami::ArrayView<int> >::expanded_store; bool ROW = false; T = double; IDX = int; U = tatami::ArrayView<double>; V = tatami::ArrayView<int>; W = tatami::ArrayView<int>; std::size_t = long long unsigned int]':
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:380:28: required from 'void tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::secondary_dimension_expanded(IDX, std::size_t, std::size_t, tatami::Workspace*, T*, T) const [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView<double>; V = tatami::ArrayView<int>; W = tatami::ArrayView<int>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:79:13: required from 'const T* tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::row(std::size_t, T*, std::size_t, std::size_t, tatami::Workspace*) const [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView<double>; V = tatami::ArrayView<int>; W = tatami::ArrayView<int>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:75:14: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:312:23: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
312 | if (i == prev_i + 1) {
| ~~^~~~~~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:317:34: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
317 | } else if (i + 1 == prev_i) {
| ~~~~~~^~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:322:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
322 | } else if (i > prev_i) {
| ~~^~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:327:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
327 | } else if (i < prev_i) {
| ~~^~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp: In instantiation of 'std::pair<long long unsigned int, long long unsigned int> tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::primary_dimension(std::size_t, std::size_t, std::size_t, std::size_t) const [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView<double>; V = tatami::ArrayView<int>; W = tatami::ArrayView<int>; std::size_t = long long unsigned int]':
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:226:25: required from 'void tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::primary_dimension_expanded(std::size_t, std::size_t, std::size_t, std::size_t, T*, T) const [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView<double>; V = tatami::ArrayView<int>; W = tatami::ArrayView<int>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:88:13: required from 'const T* tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::column(std::size_t, T*, std::size_t, std::size_t, tatami::Workspace*) const [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView<double>; V = tatami::ArrayView<int>; W = tatami::ArrayView<int>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:84:14: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:188:14: warning: unused variable 'xIt' [-Wunused-variable]
188 | auto xIt = values.begin() + pstart;
| ^~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp: In instantiation of 'void tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::secondary_dimension(IDX, std::size_t, std::size_t, tatami::Workspace*, STORE&) const [with STORE = tatami::CompressedSparseMatrix<false, double, int, tatami::ArrayView<double>, tatami::ArrayView<int>, tatami::ArrayView<int> >::raw_store; bool ROW = false; T = double; IDX = int; U = tatami::ArrayView<double>; V = tatami::ArrayView<int>; W = tatami::ArrayView<int>; std::size_t = long long unsigned int]':
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:362:28: required from 'tatami::SparseRange<T, IDX> tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::secondary_dimension_raw(IDX, std::size_t, std::size_t, tatami::Workspace*, T*, IDX*) const [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView<double>; V = tatami::ArrayView<int>; W = tatami::ArrayView<int>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:106:20: required from 'tatami::SparseRange<T, IDX> tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::sparse_row(std::size_t, T*, IDX*, std::size_t, std::size_t, tatami::Workspace*, bool) const [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView<double>; V = tatami::ArrayView<int>; W = tatami::ArrayView<int>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:101:25: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:312:23: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
312 | if (i == prev_i + 1) {
| ~~^~~~~~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:317:34: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
317 | } else if (i + 1 == prev_i) {
| ~~~~~~^~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:322:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
322 | } else if (i > prev_i) {
| ~~^~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:327:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
327 | } else if (i < prev_i) {
| ~~^~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp: In instantiation of 'void tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::secondary_dimension(IDX, std::size_t, std::size_t, tatami::Workspace*, STORE&) const [with STORE = tatami::CompressedSparseMatrix<false, double, int, std::vector<int>, std::vector<int>, std::vector<long long unsigned int> >::expanded_store; bool ROW = false; T = double; IDX = int; U = std::vector<int>; V = std::vector<int>; W = std::vector<long long unsigned int>; std::size_t = long long unsigned int]':
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:380:28: required from 'void tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::secondary_dimension_expanded(IDX, std::size_t, std::size_t, tatami::Workspace*, T*, T) const [with bool ROW = false; T = double; IDX = int; U = std::vector<int>; V = std::vector<int>; W = std::vector<long long unsigned int>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:79:13: required from 'const T* tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::row(std::size_t, T*, std::size_t, std::size_t, tatami::Workspace*) const [with bool ROW = false; T = double; IDX = int; U = std::vector<int>; V = std::vector<int>; W = std::vector<long long unsigned int>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:75:14: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:312:23: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
312 | if (i == prev_i + 1) {
| ~~^~~~~~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:317:34: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
317 | } else if (i + 1 == prev_i) {
| ~~~~~~^~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:322:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
322 | } else if (i > prev_i) {
| ~~^~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:327:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
327 | } else if (i < prev_i) {
| ~~^~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp: In instantiation of 'std::pair<long long unsigned int, long long unsigned int> tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::primary_dimension(std::size_t, std::size_t, std::size_t, std::size_t) const [with bool ROW = false; T = double; IDX = int; U = std::vector<int>; V = std::vector<int>; W = std::vector<long long unsigned int>; std::size_t = long long unsigned int]':
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:226:25: required from 'void tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::primary_dimension_expanded(std::size_t, std::size_t, std::size_t, std::size_t, T*, T) const [with bool ROW = false; T = double; IDX = int; U = std::vector<int>; V = std::vector<int>; W = std::vector<long long unsigned int>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:88:13: required from 'const T* tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::column(std::size_t, T*, std::size_t, std::size_t, tatami::Workspace*) const [with bool ROW = false; T = double; IDX = int; U = std::vector<int>; V = std::vector<int>; W = std::vector<long long unsigned int>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:84:14: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:188:14: warning: variable 'xIt' set but not used [-Wunused-but-set-variable]
188 | auto xIt = values.begin() + pstart;
| ^~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp: In instantiation of 'void tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::secondary_dimension(IDX, std::size_t, std::size_t, tatami::Workspace*, STORE&) const [with STORE = tatami::CompressedSparseMatrix<false, double, int, std::vector<int>, std::vector<int>, std::vector<long long unsigned int> >::raw_store; bool ROW = false; T = double; IDX = int; U = std::vector<int>; V = std::vector<int>; W = std::vector<long long unsigned int>; std::size_t = long long unsigned int]':
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:362:28: required from 'tatami::SparseRange<T, IDX> tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::secondary_dimension_raw(IDX, std::size_t, std::size_t, tatami::Workspace*, T*, IDX*) const [with bool ROW = false; T = double; IDX = int; U = std::vector<int>; V = std::vector<int>; W = std::vector<long long unsigned int>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:106:20: required from 'tatami::SparseRange<T, IDX> tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::sparse_row(std::size_t, T*, IDX*, std::size_t, std::size_t, tatami::Workspace*, bool) const [with bool ROW = false; T = double; IDX = int; U = std::vector<int>; V = std::vector<int>; W = std::vector<long long unsigned int>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:101:25: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:312:23: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
312 | if (i == prev_i + 1) {
| ~~^~~~~~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:317:34: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
317 | } else if (i + 1 == prev_i) {
| ~~~~~~^~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:322:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
322 | } else if (i > prev_i) {
| ~~^~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:327:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
327 | } else if (i < prev_i) {
| ~~^~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp: In instantiation of 'void tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::secondary_dimension(IDX, std::size_t, std::size_t, tatami::Workspace*, STORE&) const [with STORE = tatami::CompressedSparseMatrix<false, double, int, std::vector<double>, std::vector<int>, std::vector<long long unsigned int> >::expanded_store; bool ROW = false; T = double; IDX = int; U = std::vector<double>; V = std::vector<int>; W = std::vector<long long unsigned int>; std::size_t = long long unsigned int]':
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:380:28: required from 'void tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::secondary_dimension_expanded(IDX, std::size_t, std::size_t, tatami::Workspace*, T*, T) const [with bool ROW = false; T = double; IDX = int; U = std::vector<double>; V = std::vector<int>; W = std::vector<long long unsigned int>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:79:13: required from 'const T* tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::row(std::size_t, T*, std::size_t, std::size_t, tatami::Workspace*) const [with bool ROW = false; T = double; IDX = int; U = std::vector<double>; V = std::vector<int>; W = std::vector<long long unsigned int>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:75:14: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:312:23: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
312 | if (i == prev_i + 1) {
| ~~^~~~~~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:317:34: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
317 | } else if (i + 1 == prev_i) {
| ~~~~~~^~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:322:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
322 | } else if (i > prev_i) {
| ~~^~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:327:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
327 | } else if (i < prev_i) {
| ~~^~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp: In instantiation of 'std::pair<long long unsigned int, long long unsigned int> tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::primary_dimension(std::size_t, std::size_t, std::size_t, std::size_t) const [with bool ROW = false; T = double; IDX = int; U = std::vector<double>; V = std::vector<int>; W = std::vector<long long unsigned int>; std::size_t = long long unsigned int]':
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:226:25: required from 'void tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::primary_dimension_expanded(std::size_t, std::size_t, std::size_t, std::size_t, T*, T) const [with bool ROW = false; T = double; IDX = int; U = std::vector<double>; V = std::vector<int>; W = std::vector<long long unsigned int>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:88:13: required from 'const T* tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::column(std::size_t, T*, std::size_t, std::size_t, tatami::Workspace*) const [with bool ROW = false; T = double; IDX = int; U = std::vector<double>; V = std::vector<int>; W = std::vector<long long unsigned int>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:84:14: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:188:14: warning: variable 'xIt' set but not used [-Wunused-but-set-variable]
188 | auto xIt = values.begin() + pstart;
| ^~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp: In instantiation of 'void tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::secondary_dimension(IDX, std::size_t, std::size_t, tatami::Workspace*, STORE&) const [with STORE = tatami::CompressedSparseMatrix<false, double, int, std::vector<double>, std::vector<int>, std::vector<long long unsigned int> >::raw_store; bool ROW = false; T = double; IDX = int; U = std::vector<double>; V = std::vector<int>; W = std::vector<long long unsigned int>; std::size_t = long long unsigned int]':
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:362:28: required from 'tatami::SparseRange<T, IDX> tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::secondary_dimension_raw(IDX, std::size_t, std::size_t, tatami::Workspace*, T*, IDX*) const [with bool ROW = false; T = double; IDX = int; U = std::vector<double>; V = std::vector<int>; W = std::vector<long long unsigned int>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:106:20: required from 'tatami::SparseRange<T, IDX> tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::sparse_row(std::size_t, T*, IDX*, std::size_t, std::size_t, tatami::Workspace*, bool) const [with bool ROW = false; T = double; IDX = int; U = std::vector<double>; V = std::vector<int>; W = std::vector<long long unsigned int>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:101:25: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:312:23: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
312 | if (i == prev_i + 1) {
| ~~^~~~~~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:317:34: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
317 | } else if (i + 1 == prev_i) {
| ~~~~~~^~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:322:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
322 | } else if (i > prev_i) {
| ~~^~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:327:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
327 | } else if (i < prev_i) {
| ~~^~~~~~~~
g++ -std=gnu++17 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I../inst/include/ -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/BiocNeighbors/include' -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c prebuild.cpp -o prebuild.o
In file included from F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/stats/sums.hpp:5,
from F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/tatami.h:19,
from F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/tatami.hpp:4,
from F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/utils.hpp:15,
from F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/SimpleMatrix.hpp:4,
from F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/raticate.hpp:5,
from utils.h:13,
from prebuild.cpp:4:
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/stats/apply.hpp:220: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
220 | #pragma omp parallel
|
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/stats/apply.hpp:234: warning: ignoring '#pragma omp for' [-Wunknown-pragmas]
234 | #pragma omp for schedule(static)
|
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/stats/apply.hpp:267: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
267 | #pragma omp parallel
|
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/stats/apply.hpp:278: warning: ignoring '#pragma omp for' [-Wunknown-pragmas]
278 | #pragma omp for schedule(static)
|
In file included from F:/biocbuild/bbs-3.17-bioc/R/library/BiocNeighbors/include/kmeans/Kmeans.hpp:5,
from F:/biocbuild/bbs-3.17-bioc/R/library/BiocNeighbors/include/knncolle/Kmknn/Kmknn.hpp:7,
from F:/biocbuild/bbs-3.17-bioc/R/library/BiocNeighbors/include/knncolle/knncolle.hpp:8,
from ../inst/include/singlepp/build_indices.hpp:8,
from ../inst/include/singlepp/BasicBuilder.hpp:5,
from ../inst/include/singlepp/Classifier.hpp:5,
from ../inst/include/singlepp/singlepp.hpp:10,
from utils.h:24:
F:/biocbuild/bbs-3.17-bioc/R/library/BiocNeighbors/include/kmeans/HartiganWong.hpp:163: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
163 | #pragma omp parallel for
|
In file included from F:/biocbuild/bbs-3.17-bioc/R/library/BiocNeighbors/include/kmeans/Kmeans.hpp:6:
F:/biocbuild/bbs-3.17-bioc/R/library/BiocNeighbors/include/kmeans/InitializeKmeansPP.hpp:77: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
77 | #pragma omp parallel for
|
In file included from F:/biocbuild/bbs-3.17-bioc/R/library/BiocNeighbors/include/knncolle/knncolle.hpp:19:
F:/biocbuild/bbs-3.17-bioc/R/library/BiocNeighbors/include/knncolle/utils/find_nearest_neighbors.hpp:49: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
49 | #pragma omp parallel for
|
F:/biocbuild/bbs-3.17-bioc/R/library/BiocNeighbors/include/knncolle/utils/find_nearest_neighbors.hpp:92: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
92 | #pragma omp parallel for
|
In file included from ../inst/include/singlepp/annotate_cells.hpp:9,
from ../inst/include/singlepp/BasicScorer.hpp:5,
from ../inst/include/singlepp/Classifier.hpp:6:
../inst/include/singlepp/fine_tune.hpp: In function 'std::pair<int, double> singlepp::fill_labels_in_use(const std::vector<double>&, double, std::vector<int>&)':
../inst/include/singlepp/fine_tune.hpp:30:15: warning: comparison of integer expressions of different signedness: 'std::size_t' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
30 | if (i != best_label && next_score < val) {
| ~~^~~~~~~~~~~~~
../inst/include/singlepp/fine_tune.hpp: In function 'std::pair<int, double> singlepp::replace_labels_in_use(const std::vector<double>&, double, std::vector<int>&)':
../inst/include/singlepp/fine_tune.hpp:56:15: warning: comparison of integer expressions of different signedness: 'std::size_t' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
56 | if (i != best_index && next_score < val) {
| ~~^~~~~~~~~~~~~
In file included from ../inst/include/singlepp/IntegratedScorer.hpp:8,
from ../inst/include/singlepp/singlepp.hpp:12:
../inst/include/singlepp/IntegratedBuilder.hpp: In member function 'std::vector<singlepp::IntegratedReference> singlepp::IntegratedBuilder::finish()':
../inst/include/singlepp/IntegratedBuilder.hpp:438:36: warning: comparison of integer expressions of different signedness: 'const int' and 'std::size_t' {aka 'long long unsigned int'} [-Wsign-compare]
438 | if (it->second < first) {
| ~~~~~~~~~~~^~~~~~~
../inst/include/singlepp/IntegratedBuilder.hpp:441:36: warning: comparison of integer expressions of different signedness: 'const int' and 'std::size_t' {aka 'long long unsigned int'} [-Wsign-compare]
441 | if (it->second > last) {
| ~~~~~~~~~~~^~~~~~
prebuild.cpp: In function 'SEXPREC* prebuild(Rcpp::RObject, Rcpp::IntegerVector, Rcpp::List, bool, int)':
prebuild.cpp:24:26: warning: comparison of integer expressions of different signedness: 'std::size_t' {aka 'long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare]
24 | for (size_t m = 0; m < markers.size(); ++m) {
| ~~^~~~~~~~~~~~~~~~
prebuild.cpp:29:30: warning: comparison of integer expressions of different signedness: 'std::size_t' {aka 'long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare]
29 | for (size_t n = 0; n < curmarkers.size(); ++n) {
| ~~^~~~~~~~~~~~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/BiocNeighbors/include/knncolle/Kmknn/Kmknn.hpp: In instantiation of 'knncolle::Kmknn<DISTANCE, INDEX_t, DISTANCE_t, QUERY_t, INTERNAL_t>::Kmknn(INDEX_t, INDEX_t, const INPUT_t*, double) [with INPUT_t = double; DISTANCE = knncolle::distances::Euclidean; INDEX_t = int; DISTANCE_t = double; QUERY_t = double; INTERNAL_t = double]':
../inst/include/singlepp/BasicBuilder.hpp:103:127: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/BiocNeighbors/include/knncolle/Kmknn/Kmknn.hpp:116:31: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
116 | for (INDEX_t i = 1; i < ncenters; ++i) {
| ~~^~~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/BiocNeighbors/include/knncolle/Kmknn/Kmknn.hpp:133:35: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
133 | for (INDEX_t c = 0; c < ncenters; ++c) {
| ~~^~~~~~~~~~
../inst/include/singlepp/fine_tune.hpp: In instantiation of 'std::pair<int, double> singlepp::FineTuner::run(singlepp::RankedVector<double, int>&, const std::vector<singlepp::Reference>&, const singlepp::Markers&, std::vector<double>&, double, double) [with bool test = false; singlepp::RankedVector<double, int> = std::vector<std::pair<double, int>, std::allocator<std::pair<double, int> > >; singlepp::Markers = std::vector<std::vector<std::vector<int> > >]':
../inst/include/singlepp/annotate_cells.hpp:120:36: required from here
../inst/include/singlepp/fine_tune.hpp:136:24: warning: unused variable 'NR' [-Wunused-variable]
136 | size_t NR = curref.index->ndim();
| ^~
In file included from ../inst/include/singlepp/singlepp.hpp:15:
../inst/include/singlepp/load_references.hpp: In instantiation of 'singlepp::Markers singlepp::load_markers_internal(std::size_t, std::size_t, Reader&) [with Reader = byteme::RawFileReader; Markers = std::vector<std::vector<std::vector<int> > >; std::size_t = long long unsigned int]':
../inst/include/singlepp/load_references.hpp:598:33: required from here
../inst/include/singlepp/load_references.hpp:490:10: warning: unused variable 'continuing' [-Wunused-variable]
490 | bool continuing = false;
| ^~~~~~~~~~
In file included from F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/raticate.hpp:11:
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/DelayedAbind.hpp: In instantiation of 'raticate::Parsed<Data, Index> raticate::parse_DelayedAbind(Rcpp::RObject) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]':
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/raticate.hpp:76:53: required from 'raticate::Parsed<Data, Index> raticate::parse(Rcpp::RObject, bool) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]'
prebuild.cpp:37:47: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/DelayedAbind.hpp:19:26: warning: comparison of integer expressions of different signedness: 'std::size_t' {aka 'long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare]
19 | for (size_t s = 0; s < seeds.size(); ++s) {
| ~~^~~~~~~~~~~~~~
In file included from F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/raticate.hpp:6:
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/SparseArraySeed.hpp: In instantiation of 'raticate::Parsed<Data, Index> raticate::parse_SparseArraySeed(Rcpp::RObject, const V&) [with Data = double; Index = int; V = Rcpp::Vector<14, Rcpp::PreserveStorage>; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]':
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/SparseArraySeed.hpp:113:52: required from 'raticate::Parsed<Data, Index> raticate::parse_SparseArraySeed(Rcpp::RObject) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/raticate.hpp:61:56: required from 'raticate::Parsed<Data, Index> raticate::parse(Rcpp::RObject, bool) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]'
prebuild.cpp:37:47: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/SparseArraySeed.hpp:23:13: warning: comparison of integer expressions of different signedness: 'const std::size_t' {aka 'const long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare]
23 | if (nnz != val.size()) {
| ~~~~^~~~~~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/SparseArraySeed.hpp: In instantiation of 'raticate::Parsed<Data, Index> raticate::parse_SparseArraySeed(Rcpp::RObject, const V&) [with Data = double; Index = int; V = Rcpp::Vector<13>; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]':
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/SparseArraySeed.hpp:116:52: required from 'raticate::Parsed<Data, Index> raticate::parse_SparseArraySeed(Rcpp::RObject) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/raticate.hpp:61:56: required from 'raticate::Parsed<Data, Index> raticate::parse(Rcpp::RObject, bool) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]'
prebuild.cpp:37:47: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/SparseArraySeed.hpp:23:13: warning: comparison of integer expressions of different signedness: 'const std::size_t' {aka 'const long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare]
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/SparseArraySeed.hpp: In instantiation of 'raticate::Parsed<Data, Index> raticate::parse_SparseArraySeed(Rcpp::RObject, const V&) [with Data = double; Index = int; V = Rcpp::Vector<10, Rcpp::PreserveStorage>; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]':
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/SparseArraySeed.hpp:119:52: required from 'raticate::Parsed<Data, Index> raticate::parse_SparseArraySeed(Rcpp::RObject) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/raticate.hpp:61:56: required from 'raticate::Parsed<Data, Index> raticate::parse(Rcpp::RObject, bool) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]'
prebuild.cpp:37:47: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/SparseArraySeed.hpp:23:13: warning: comparison of integer expressions of different signedness: 'const std::size_t' {aka 'const long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare]
F:/biocbuild/bbs-3.17-bioc/R/library/BiocNeighbors/include/kmeans/InitializeKmeansPP.hpp: In instantiation of 'std::vector<IDX> kmeans::InitializeKmeansPP<DATA_t, CLUSTER_t, INDEX_t>::run(int, INDEX_t, const DATA_t*, CLUSTER_t) [with DATA_t = double; CLUSTER_t = int; INDEX_t = int]':
F:/biocbuild/bbs-3.17-bioc/R/library/BiocNeighbors/include/kmeans/InitializeKmeansPP.hpp:136:25: required from 'CLUSTER_t kmeans::InitializeKmeansPP<DATA_t, CLUSTER_t, INDEX_t>::run(int, INDEX_t, const DATA_t*, CLUSTER_t, DATA_t*, CLUSTER_t*) [with DATA_t = double; CLUSTER_t = int; INDEX_t = int]'
F:/biocbuild/bbs-3.17-bioc/R/library/BiocNeighbors/include/kmeans/Kmeans.hpp:91:32: required from 'kmeans::Details<DATA_t, INDEX_t> kmeans::Kmeans<DATA_t, CLUSTER_t, INDEX_t>::run(int, INDEX_t, const DATA_t*, CLUSTER_t, DATA_t*, CLUSTER_t*, kmeans::Initialize<DATA_t, CLUSTER_t, INDEX_t>*, kmeans::Refine<DATA_t, CLUSTER_t, INDEX_t>*) [with DATA_t = double; CLUSTER_t = int; INDEX_t = int]'
F:/biocbuild/bbs-3.17-bioc/R/library/BiocNeighbors/include/knncolle/Kmknn/Kmknn.hpp:106:60: required from 'knncolle::Kmknn<DISTANCE, INDEX_t, DISTANCE_t, QUERY_t, INTERNAL_t>::Kmknn(INDEX_t, INDEX_t, const INPUT_t*, double) [with INPUT_t = double; DISTANCE = knncolle::distances::Euclidean; INDEX_t = int; DISTANCE_t = double; QUERY_t = double; INTERNAL_t = double]'
../inst/include/singlepp/BasicBuilder.hpp:103:127: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/BiocNeighbors/include/kmeans/InitializeKmeansPP.hpp:73:21: warning: variable 'counter' set but not used [-Wunused-but-set-variable]
73 | INDEX_t counter = 0;
| ^~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/BiocNeighbors/include/kmeans/HartiganWong.hpp: In instantiation of 'void kmeans::HartiganWong<DATA_t, CLUSTER_t, INDEX_t>::optimal_transfer(INDEX_t&) [with DATA_t = double; CLUSTER_t = int; INDEX_t = int]':
F:/biocbuild/bbs-3.17-bioc/R/library/BiocNeighbors/include/kmeans/HartiganWong.hpp:235:13: required from 'kmeans::Details<DATA_t, INDEX_t> kmeans::HartiganWong<DATA_t, CLUSTER_t, INDEX_t>::run(int, INDEX_t, const DATA_t*, CLUSTER_t, DATA_t*, CLUSTER_t*) [with DATA_t = double; CLUSTER_t = int; INDEX_t = int]'
F:/biocbuild/bbs-3.17-bioc/R/library/BiocNeighbors/include/kmeans/Kmeans.hpp:98:26: required from 'kmeans::Details<DATA_t, INDEX_t> kmeans::Kmeans<DATA_t, CLUSTER_t, INDEX_t>::run(int, INDEX_t, const DATA_t*, CLUSTER_t, DATA_t*, CLUSTER_t*, kmeans::Initialize<DATA_t, CLUSTER_t, INDEX_t>*, kmeans::Refine<DATA_t, CLUSTER_t, INDEX_t>*) [with DATA_t = double; CLUSTER_t = int; INDEX_t = int]'
F:/biocbuild/bbs-3.17-bioc/R/library/BiocNeighbors/include/knncolle/Kmknn/Kmknn.hpp:106:60: required from 'knncolle::Kmknn<DISTANCE, INDEX_t, DISTANCE_t, QUERY_t, INTERNAL_t>::Kmknn(INDEX_t, INDEX_t, const INPUT_t*, double) [with INPUT_t = double; DISTANCE = knncolle::distances::Euclidean; INDEX_t = int; DISTANCE_t = double; QUERY_t = double; INTERNAL_t = double]'
../inst/include/singlepp/BasicBuilder.hpp:103:127: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/BiocNeighbors/include/kmeans/HartiganWong.hpp:344:41: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
344 | if (obs >= live[l1] && obs >= live[cen] || cen == l1 || cen == ll) {
| ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
In file included from F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/tatami.h:12:
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/utils/compress_sparse_triplets.hpp: In instantiation of 'std::vector<long long unsigned int> tatami::compress_sparse_triplets(std::size_t, std::size_t, U&, V&, W&) [with bool ROW = false; U = std::vector<double>; V = std::vector<int>; W = std::vector<int>; std::size_t = long long unsigned int]':
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/SparseArraySeed.hpp:88:56: required from 'raticate::Parsed<Data, Index> raticate::parse_SparseArraySeed(Rcpp::RObject, const V&) [with Data = double; Index = int; V = Rcpp::Vector<14, Rcpp::PreserveStorage>; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/SparseArraySeed.hpp:113:52: required from 'raticate::Parsed<Data, Index> raticate::parse_SparseArraySeed(Rcpp::RObject) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/raticate.hpp:61:56: required from 'raticate::Parsed<Data, Index> raticate::parse(Rcpp::RObject, bool) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]'
prebuild.cpp:37:47: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/utils/compress_sparse_triplets.hpp:127:28: warning: comparison of integer expressions of different signedness: '__gnu_cxx::__alloc_traits<std::allocator<long long unsigned int>, long long unsigned int>::value_type' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
127 | if (indices[i] == -1) {
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/utils/compress_sparse_triplets.hpp: In instantiation of 'std::vector<long long unsigned int> tatami::compress_sparse_triplets(std::size_t, std::size_t, U&, V&, W&) [with bool ROW = false; U = std::vector<int>; V = std::vector<int>; W = std::vector<int>; std::size_t = long long unsigned int]':
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/SparseArraySeed.hpp:88:56: required from 'raticate::Parsed<Data, Index> raticate::parse_SparseArraySeed(Rcpp::RObject, const V&) [with Data = double; Index = int; V = Rcpp::Vector<13>; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/SparseArraySeed.hpp:116:52: required from 'raticate::Parsed<Data, Index> raticate::parse_SparseArraySeed(Rcpp::RObject) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/raticate.hpp:61:56: required from 'raticate::Parsed<Data, Index> raticate::parse(Rcpp::RObject, bool) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]'
prebuild.cpp:37:47: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/utils/compress_sparse_triplets.hpp:127:28: warning: comparison of integer expressions of different signedness: '__gnu_cxx::__alloc_traits<std::allocator<long long unsigned int>, long long unsigned int>::value_type' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
In file included from F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/tatami.h:7:
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/DelayedSubset.hpp: In instantiation of 'tatami::DelayedSubset<MARGIN, T, IDX, V>::DelayedSubset(std::shared_ptr<const tatami::Matrix<T, IDX> >, V) [with int MARGIN = 0; T = double; IDX = int; V = std::vector<int>]':
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/DelayedSubset.hpp:322:9: required from 'std::shared_ptr<_Tp> tatami::make_DelayedSubset(std::shared_ptr<_Tp>, V) [with int MARGIN = 0; MAT = Matrix<double, int>; V = std::vector<int>]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/DelayedSubset.hpp:28:48: required from 'raticate::Parsed<Data, Index> raticate::parse_DelayedSubset(Rcpp::RObject) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/raticate.hpp:72:54: required from 'raticate::Parsed<Data, Index> raticate::parse(Rcpp::RObject, bool) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]'
prebuild.cpp:37:47: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/DelayedSubset.hpp:48:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
48 | if (chosen != indices.size()) {
| ~~~~~~~^~~~~~~~~~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/DelayedSubset.hpp: In instantiation of 'tatami::DelayedSubset<MARGIN, T, IDX, V>::DelayedSubset(std::shared_ptr<const tatami::Matrix<T, IDX> >, V) [with int MARGIN = 1; T = double; IDX = int; V = std::vector<int>]':
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/DelayedSubset.hpp:322:9: required from 'std::shared_ptr<_Tp> tatami::make_DelayedSubset(std::shared_ptr<_Tp>, V) [with int MARGIN = 1; MAT = Matrix<double, int>; V = std::vector<int>]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/DelayedSubset.hpp:38:48: required from 'raticate::Parsed<Data, Index> raticate::parse_DelayedSubset(Rcpp::RObject) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/raticate.hpp:72:54: required from 'raticate::Parsed<Data, Index> raticate::parse(Rcpp::RObject, bool) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]'
prebuild.cpp:37:47: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/DelayedSubset.hpp:48:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
In file included from F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/tatami.h:5:
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp: In instantiation of 'void tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::check_values(bool) [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView<double>; V = tatami::ArrayView<int>; W = tatami::ArrayView<int>]':
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:55:9: required from 'tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::CompressedSparseMatrix(std::size_t, std::size_t, U, V, W, bool) [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView<double>; V = tatami::ArrayView<int>; W = tatami::ArrayView<int>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/CSparseMatrix.hpp:24:9: required from 'raticate::Parsed<Data, Index> raticate::parse_CSparseMatrix(Rcpp::RObject, const V&) [with Data = double; Index = int; V = Rcpp::Vector<14, Rcpp::PreserveStorage>; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/CSparseMatrix.hpp:40:31: required from 'raticate::Parsed<Data, Index> raticate::parse_dgCMatrix(Rcpp::RObject) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/raticate.hpp:63:50: required from 'raticate::Parsed<Data, Index> raticate::parse(Rcpp::RObject, bool) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]'
prebuild.cpp:37:47: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:154:41: warning: comparison of integer expressions of different signedness: 'int' and 'std::size_t' {aka 'long long unsigned int'} [-Wsign-compare]
154 | if (indptrs[indptrs.size() - 1] != indices.size()) {
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:167:32: warning: comparison of integer expressions of different signedness: 'std::size_t' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
167 | while (counter < indptrs[i]) {
| ~~~~~~~~^~~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp: In instantiation of 'void tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::check_values(bool) [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView<int>; V = tatami::ArrayView<int>; W = tatami::ArrayView<int>]':
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:55:9: required from 'tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::CompressedSparseMatrix(std::size_t, std::size_t, U, V, W, bool) [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView<int>; V = tatami::ArrayView<int>; W = tatami::ArrayView<int>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/CSparseMatrix.hpp:24:9: required from 'raticate::Parsed<Data, Index> raticate::parse_CSparseMatrix(Rcpp::RObject, const V&) [with Data = double; Index = int; V = Rcpp::Vector<10, Rcpp::PreserveStorage>; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/CSparseMatrix.hpp:46:31: required from 'raticate::Parsed<Data, Index> raticate::parse_lgCMatrix(Rcpp::RObject) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/raticate.hpp:65:50: required from 'raticate::Parsed<Data, Index> raticate::parse(Rcpp::RObject, bool) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]'
prebuild.cpp:37:47: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:154:41: warning: comparison of integer expressions of different signedness: 'int' and 'std::size_t' {aka 'long long unsigned int'} [-Wsign-compare]
154 | if (indptrs[indptrs.size() - 1] != indices.size()) {
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:167:32: warning: comparison of integer expressions of different signedness: 'std::size_t' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
167 | while (counter < indptrs[i]) {
| ~~~~~~~~^~~~~~~~~~
In file included from F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/raticate.hpp:12:
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp: In instantiation of 'void raticate::UnknownMatrixCore<Data, Index>::check_quick_dense_dims(const Object&, std::size_t, std::size_t) const [with Object = Rcpp::Vector<10, Rcpp::PreserveStorage>; Data = double; Index = int; std::size_t = long long unsigned int]':
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:200:35: required from 'void raticate::UnknownMatrixCore<Data, Index>::quick_dense_extractor_raw(std::size_t, Data*, std::size_t, std::size_t) const [with bool byrow = true; Data = double; Index = int; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:443:73: required from 'void raticate::UnknownEvaluator<Data, Index>::harvest() [with Data = double; Index = int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:554:31: required from 'void raticate::ParallelCoordinator::run(std::size_t, Function, std::size_t) [with Data = double; Index = int; Function = singlepp::annotate_cells_simple(const tatami::Matrix<double, int>*, std::size_t, const int*, const std::vector<Reference>&, const Markers&, double, bool, double, int*, std::vector<double*>&, double*, int)::<lambda(std::size_t, std::size_t)>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/parallelize.hpp:37:53: required from 'void raticate::parallelize(std::size_t, Function, std::size_t) [with Data = double; Index = int; Function = singlepp::annotate_cells_simple(const tatami::Matrix<double, int>*, std::size_t, const int*, const std::vector<Reference>&, const Markers&, double, bool, double, int*, std::vector<double*>&, double*, int)::<lambda(std::size_t, std::size_t)>; std::size_t = long long unsigned int]'
utils.h:17:39: required from 'void parallelize(std::size_t, Function, int) [with Function = singlepp::annotate_cells_simple(const tatami::Matrix<double, int>*, std::size_t, const int*, const std::vector<Reference>&, const Markers&, double, bool, double, int*, std::vector<double*>&, double*, int)::<lambda(std::size_t, std::size_t)>; std::size_t = long long unsigned int]'
../inst/include/singlepp/annotate_cells.hpp:64:29: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:187:24: warning: comparison of integer expressions of different signedness: 'R_xlen_t' {aka 'long long int'} and 'std::size_t' {aka 'long long unsigned int'} [-Wsign-compare]
187 | if (obj.size() != last - first) {
| ~~~~~~~~~~~^~~~~~~~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp: In instantiation of 'void raticate::UnknownMatrixCore<Data, Index>::check_quick_dense_dims(const Object&, std::size_t, std::size_t) const [with Object = Rcpp::Vector<13>; Data = double; Index = int; std::size_t = long long unsigned int]':
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:205:35: required from 'void raticate::UnknownMatrixCore<Data, Index>::quick_dense_extractor_raw(std::size_t, Data*, std::size_t, std::size_t) const [with bool byrow = true; Data = double; Index = int; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:443:73: required from 'void raticate::UnknownEvaluator<Data, Index>::harvest() [with Data = double; Index = int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:554:31: required from 'void raticate::ParallelCoordinator::run(std::size_t, Function, std::size_t) [with Data = double; Index = int; Function = singlepp::annotate_cells_simple(const tatami::Matrix<double, int>*, std::size_t, const int*, const std::vector<Reference>&, const Markers&, double, bool, double, int*, std::vector<double*>&, double*, int)::<lambda(std::size_t, std::size_t)>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/parallelize.hpp:37:53: required from 'void raticate::parallelize(std::size_t, Function, std::size_t) [with Data = double; Index = int; Function = singlepp::annotate_cells_simple(const tatami::Matrix<double, int>*, std::size_t, const int*, const std::vector<Reference>&, const Markers&, double, bool, double, int*, std::vector<double*>&, double*, int)::<lambda(std::size_t, std::size_t)>; std::size_t = long long unsigned int]'
utils.h:17:39: required from 'void parallelize(std::size_t, Function, int) [with Function = singlepp::annotate_cells_simple(const tatami::Matrix<double, int>*, std::size_t, const int*, const std::vector<Reference>&, const Markers&, double, bool, double, int*, std::vector<double*>&, double*, int)::<lambda(std::size_t, std::size_t)>; std::size_t = long long unsigned int]'
../inst/include/singlepp/annotate_cells.hpp:64:29: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:187:24: warning: comparison of integer expressions of different signedness: 'R_xlen_t' {aka 'long long int'} and 'std::size_t' {aka 'long long unsigned int'} [-Wsign-compare]
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp: In instantiation of 'void raticate::UnknownMatrixCore<Data, Index>::check_quick_dense_dims(const Object&, std::size_t, std::size_t) const [with Object = Rcpp::Vector<14, Rcpp::PreserveStorage>; Data = double; Index = int; std::size_t = long long unsigned int]':
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:210:35: required from 'void raticate::UnknownMatrixCore<Data, Index>::quick_dense_extractor_raw(std::size_t, Data*, std::size_t, std::size_t) const [with bool byrow = true; Data = double; Index = int; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:443:73: required from 'void raticate::UnknownEvaluator<Data, Index>::harvest() [with Data = double; Index = int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:554:31: required from 'void raticate::ParallelCoordinator::run(std::size_t, Function, std::size_t) [with Data = double; Index = int; Function = singlepp::annotate_cells_simple(const tatami::Matrix<double, int>*, std::size_t, const int*, const std::vector<Reference>&, const Markers&, double, bool, double, int*, std::vector<double*>&, double*, int)::<lambda(std::size_t, std::size_t)>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/parallelize.hpp:37:53: required from 'void raticate::parallelize(std::size_t, Function, std::size_t) [with Data = double; Index = int; Function = singlepp::annotate_cells_simple(const tatami::Matrix<double, int>*, std::size_t, const int*, const std::vector<Reference>&, const Markers&, double, bool, double, int*, std::vector<double*>&, double*, int)::<lambda(std::size_t, std::size_t)>; std::size_t = long long unsigned int]'
utils.h:17:39: required from 'void parallelize(std::size_t, Function, int) [with Function = singlepp::annotate_cells_simple(const tatami::Matrix<double, int>*, std::size_t, const int*, const std::vector<Reference>&, const Markers&, double, bool, double, int*, std::vector<double*>&, double*, int)::<lambda(std::size_t, std::size_t)>; std::size_t = long long unsigned int]'
../inst/include/singlepp/annotate_cells.hpp:64:29: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:187:24: warning: comparison of integer expressions of different signedness: 'R_xlen_t' {aka 'long long int'} and 'std::size_t' {aka 'long long unsigned int'} [-Wsign-compare]
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp: In instantiation of 'void raticate::UnknownMatrixCore<Data, Index>::check_quick_sparse_dims(const Object&, std::size_t) const [with Object = Rcpp::Vector<10, Rcpp::PreserveStorage>; Data = double; Index = int; std::size_t = long long unsigned int]':
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:298:36: required from 'void raticate::UnknownMatrixCore<Data, Index>::quick_sparse_extractor_raw(std::size_t, std::size_t*, Data*, Index*, std::size_t, std::size_t) const [with bool byrow = true; Data = double; Index = int; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:457:74: required from 'void raticate::UnknownEvaluator<Data, Index>::harvest() [with Data = double; Index = int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:554:31: required from 'void raticate::ParallelCoordinator::run(std::size_t, Function, std::size_t) [with Data = double; Index = int; Function = singlepp::annotate_cells_simple(const tatami::Matrix<double, int>*, std::size_t, const int*, const std::vector<Reference>&, const Markers&, double, bool, double, int*, std::vector<double*>&, double*, int)::<lambda(std::size_t, std::size_t)>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/parallelize.hpp:37:53: required from 'void raticate::parallelize(std::size_t, Function, std::size_t) [with Data = double; Index = int; Function = singlepp::annotate_cells_simple(const tatami::Matrix<double, int>*, std::size_t, const int*, const std::vector<Reference>&, const Markers&, double, bool, double, int*, std::vector<double*>&, double*, int)::<lambda(std::size_t, std::size_t)>; std::size_t = long long unsigned int]'
utils.h:17:39: required from 'void parallelize(std::size_t, Function, int) [with Function = singlepp::annotate_cells_simple(const tatami::Matrix<double, int>*, std::size_t, const int*, const std::vector<Reference>&, const Markers&, double, bool, double, int*, std::vector<double*>&, double*, int)::<lambda(std::size_t, std::size_t)>; std::size_t = long long unsigned int]'
../inst/include/singlepp/annotate_cells.hpp:64:29: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:246:24: warning: comparison of integer expressions of different signedness: 'R_xlen_t' {aka 'long long int'} and 'std::size_t' {aka 'long long unsigned int'} [-Wsign-compare]
246 | if (obj.size() != nnzero) {
| ~~~~~~~~~~~^~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp: In instantiation of 'void raticate::UnknownMatrixCore<Data, Index>::check_quick_sparse_dims(const Object&, std::size_t) const [with Object = Rcpp::Vector<13>; Data = double; Index = int; std::size_t = long long unsigned int]':
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:303:36: required from 'void raticate::UnknownMatrixCore<Data, Index>::quick_sparse_extractor_raw(std::size_t, std::size_t*, Data*, Index*, std::size_t, std::size_t) const [with bool byrow = true; Data = double; Index = int; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:457:74: required from 'void raticate::UnknownEvaluator<Data, Index>::harvest() [with Data = double; Index = int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:554:31: required from 'void raticate::ParallelCoordinator::run(std::size_t, Function, std::size_t) [with Data = double; Index = int; Function = singlepp::annotate_cells_simple(const tatami::Matrix<double, int>*, std::size_t, const int*, const std::vector<Reference>&, const Markers&, double, bool, double, int*, std::vector<double*>&, double*, int)::<lambda(std::size_t, std::size_t)>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/parallelize.hpp:37:53: required from 'void raticate::parallelize(std::size_t, Function, std::size_t) [with Data = double; Index = int; Function = singlepp::annotate_cells_simple(const tatami::Matrix<double, int>*, std::size_t, const int*, const std::vector<Reference>&, const Markers&, double, bool, double, int*, std::vector<double*>&, double*, int)::<lambda(std::size_t, std::size_t)>; std::size_t = long long unsigned int]'
utils.h:17:39: required from 'void parallelize(std::size_t, Function, int) [with Function = singlepp::annotate_cells_simple(const tatami::Matrix<double, int>*, std::size_t, const int*, const std::vector<Reference>&, const Markers&, double, bool, double, int*, std::vector<double*>&, double*, int)::<lambda(std::size_t, std::size_t)>; std::size_t = long long unsigned int]'
../inst/include/singlepp/annotate_cells.hpp:64:29: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:246:24: warning: comparison of integer expressions of different signedness: 'R_xlen_t' {aka 'long long int'} and 'std::size_t' {aka 'long long unsigned int'} [-Wsign-compare]
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp: In instantiation of 'void raticate::UnknownMatrixCore<Data, Index>::check_quick_sparse_dims(const Object&, std::size_t) const [with Object = Rcpp::Vector<14, Rcpp::PreserveStorage>; Data = double; Index = int; std::size_t = long long unsigned int]':
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:308:36: required from 'void raticate::UnknownMatrixCore<Data, Index>::quick_sparse_extractor_raw(std::size_t, std::size_t*, Data*, Index*, std::size_t, std::size_t) const [with bool byrow = true; Data = double; Index = int; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:457:74: required from 'void raticate::UnknownEvaluator<Data, Index>::harvest() [with Data = double; Index = int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:554:31: required from 'void raticate::ParallelCoordinator::run(std::size_t, Function, std::size_t) [with Data = double; Index = int; Function = singlepp::annotate_cells_simple(const tatami::Matrix<double, int>*, std::size_t, const int*, const std::vector<Reference>&, const Markers&, double, bool, double, int*, std::vector<double*>&, double*, int)::<lambda(std::size_t, std::size_t)>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/parallelize.hpp:37:53: required from 'void raticate::parallelize(std::size_t, Function, std::size_t) [with Data = double; Index = int; Function = singlepp::annotate_cells_simple(const tatami::Matrix<double, int>*, std::size_t, const int*, const std::vector<Reference>&, const Markers&, double, bool, double, int*, std::vector<double*>&, double*, int)::<lambda(std::size_t, std::size_t)>; std::size_t = long long unsigned int]'
utils.h:17:39: required from 'void parallelize(std::size_t, Function, int) [with Function = singlepp::annotate_cells_simple(const tatami::Matrix<double, int>*, std::size_t, const int*, const std::vector<Reference>&, const Markers&, double, bool, double, int*, std::vector<double*>&, double*, int)::<lambda(std::size_t, std::size_t)>; std::size_t = long long unsigned int]'
../inst/include/singlepp/annotate_cells.hpp:64:29: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:246:24: warning: comparison of integer expressions of different signedness: 'R_xlen_t' {aka 'long long int'} and 'std::size_t' {aka 'long long unsigned int'} [-Wsign-compare]
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp: In instantiation of 'void tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::secondary_dimension(IDX, std::size_t, std::size_t, tatami::Workspace*, STORE&) const [with STORE = tatami::CompressedSparseMatrix<false, double, int, tatami::ArrayView<int>, tatami::ArrayView<int>, tatami::ArrayView<int> >::expanded_store; bool ROW = false; T = double; IDX = int; U = tatami::ArrayView<int>; V = tatami::ArrayView<int>; W = tatami::ArrayView<int>; std::size_t = long long unsigned int]':
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:380:28: required from 'void tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::secondary_dimension_expanded(IDX, std::size_t, std::size_t, tatami::Workspace*, T*, T) const [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView<int>; V = tatami::ArrayView<int>; W = tatami::ArrayView<int>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:79:13: required from 'const T* tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::row(std::size_t, T*, std::size_t, std::size_t, tatami::Workspace*) const [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView<int>; V = tatami::ArrayView<int>; W = tatami::ArrayView<int>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:75:14: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:312:23: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
312 | if (i == prev_i + 1) {
| ~~^~~~~~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:317:34: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
317 | } else if (i + 1 == prev_i) {
| ~~~~~~^~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:322:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
322 | } else if (i > prev_i) {
| ~~^~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:327:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
327 | } else if (i < prev_i) {
| ~~^~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp: In instantiation of 'std::pair<long long unsigned int, long long unsigned int> tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::primary_dimension(std::size_t, std::size_t, std::size_t, std::size_t) const [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView<int>; V = tatami::ArrayView<int>; W = tatami::ArrayView<int>; std::size_t = long long unsigned int]':
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:226:25: required from 'void tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::primary_dimension_expanded(std::size_t, std::size_t, std::size_t, std::size_t, T*, T) const [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView<int>; V = tatami::ArrayView<int>; W = tatami::ArrayView<int>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:88:13: required from 'const T* tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::column(std::size_t, T*, std::size_t, std::size_t, tatami::Workspace*) const [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView<int>; V = tatami::ArrayView<int>; W = tatami::ArrayView<int>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:84:14: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:188:14: warning: unused variable 'xIt' [-Wunused-variable]
188 | auto xIt = values.begin() + pstart;
| ^~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp: In instantiation of 'void tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::secondary_dimension(IDX, std::size_t, std::size_t, tatami::Workspace*, STORE&) const [with STORE = tatami::CompressedSparseMatrix<false, double, int, tatami::ArrayView<int>, tatami::ArrayView<int>, tatami::ArrayView<int> >::raw_store; bool ROW = false; T = double; IDX = int; U = tatami::ArrayView<int>; V = tatami::ArrayView<int>; W = tatami::ArrayView<int>; std::size_t = long long unsigned int]':
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:362:28: required from 'tatami::SparseRange<T, IDX> tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::secondary_dimension_raw(IDX, std::size_t, std::size_t, tatami::Workspace*, T*, IDX*) const [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView<int>; V = tatami::ArrayView<int>; W = tatami::ArrayView<int>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:106:20: required from 'tatami::SparseRange<T, IDX> tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::sparse_row(std::size_t, T*, IDX*, std::size_t, std::size_t, tatami::Workspace*, bool) const [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView<int>; V = tatami::ArrayView<int>; W = tatami::ArrayView<int>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:101:25: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:312:23: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
312 | if (i == prev_i + 1) {
| ~~^~~~~~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:317:34: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
317 | } else if (i + 1 == prev_i) {
| ~~~~~~^~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:322:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
322 | } else if (i > prev_i) {
| ~~^~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:327:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
327 | } else if (i < prev_i) {
| ~~^~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp: In instantiation of 'void tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::secondary_dimension(IDX, std::size_t, std::size_t, tatami::Workspace*, STORE&) const [with STORE = tatami::CompressedSparseMatrix<false, double, int, tatami::ArrayView<double>, tatami::ArrayView<int>, tatami::ArrayView<int> >::expanded_store; bool ROW = false; T = double; IDX = int; U = tatami::ArrayView<double>; V = tatami::ArrayView<int>; W = tatami::ArrayView<int>; std::size_t = long long unsigned int]':
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:380:28: required from 'void tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::secondary_dimension_expanded(IDX, std::size_t, std::size_t, tatami::Workspace*, T*, T) const [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView<double>; V = tatami::ArrayView<int>; W = tatami::ArrayView<int>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:79:13: required from 'const T* tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::row(std::size_t, T*, std::size_t, std::size_t, tatami::Workspace*) const [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView<double>; V = tatami::ArrayView<int>; W = tatami::ArrayView<int>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:75:14: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:312:23: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
312 | if (i == prev_i + 1) {
| ~~^~~~~~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:317:34: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
317 | } else if (i + 1 == prev_i) {
| ~~~~~~^~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:322:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
322 | } else if (i > prev_i) {
| ~~^~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:327:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
327 | } else if (i < prev_i) {
| ~~^~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp: In instantiation of 'std::pair<long long unsigned int, long long unsigned int> tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::primary_dimension(std::size_t, std::size_t, std::size_t, std::size_t) const [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView<double>; V = tatami::ArrayView<int>; W = tatami::ArrayView<int>; std::size_t = long long unsigned int]':
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:226:25: required from 'void tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::primary_dimension_expanded(std::size_t, std::size_t, std::size_t, std::size_t, T*, T) const [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView<double>; V = tatami::ArrayView<int>; W = tatami::ArrayView<int>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:88:13: required from 'const T* tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::column(std::size_t, T*, std::size_t, std::size_t, tatami::Workspace*) const [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView<double>; V = tatami::ArrayView<int>; W = tatami::ArrayView<int>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:84:14: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:188:14: warning: unused variable 'xIt' [-Wunused-variable]
188 | auto xIt = values.begin() + pstart;
| ^~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp: In instantiation of 'void tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::secondary_dimension(IDX, std::size_t, std::size_t, tatami::Workspace*, STORE&) const [with STORE = tatami::CompressedSparseMatrix<false, double, int, tatami::ArrayView<double>, tatami::ArrayView<int>, tatami::ArrayView<int> >::raw_store; bool ROW = false; T = double; IDX = int; U = tatami::ArrayView<double>; V = tatami::ArrayView<int>; W = tatami::ArrayView<int>; std::size_t = long long unsigned int]':
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:362:28: required from 'tatami::SparseRange<T, IDX> tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::secondary_dimension_raw(IDX, std::size_t, std::size_t, tatami::Workspace*, T*, IDX*) const [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView<double>; V = tatami::ArrayView<int>; W = tatami::ArrayView<int>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:106:20: required from 'tatami::SparseRange<T, IDX> tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::sparse_row(std::size_t, T*, IDX*, std::size_t, std::size_t, tatami::Workspace*, bool) const [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView<double>; V = tatami::ArrayView<int>; W = tatami::ArrayView<int>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:101:25: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:312:23: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
312 | if (i == prev_i + 1) {
| ~~^~~~~~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:317:34: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
317 | } else if (i + 1 == prev_i) {
| ~~~~~~^~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:322:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
322 | } else if (i > prev_i) {
| ~~^~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:327:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
327 | } else if (i < prev_i) {
| ~~^~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp: In instantiation of 'void tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::secondary_dimension(IDX, std::size_t, std::size_t, tatami::Workspace*, STORE&) const [with STORE = tatami::CompressedSparseMatrix<false, double, int, std::vector<int>, std::vector<int>, std::vector<long long unsigned int> >::expanded_store; bool ROW = false; T = double; IDX = int; U = std::vector<int>; V = std::vector<int>; W = std::vector<long long unsigned int>; std::size_t = long long unsigned int]':
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:380:28: required from 'void tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::secondary_dimension_expanded(IDX, std::size_t, std::size_t, tatami::Workspace*, T*, T) const [with bool ROW = false; T = double; IDX = int; U = std::vector<int>; V = std::vector<int>; W = std::vector<long long unsigned int>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:79:13: required from 'const T* tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::row(std::size_t, T*, std::size_t, std::size_t, tatami::Workspace*) const [with bool ROW = false; T = double; IDX = int; U = std::vector<int>; V = std::vector<int>; W = std::vector<long long unsigned int>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:75:14: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:312:23: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
312 | if (i == prev_i + 1) {
| ~~^~~~~~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:317:34: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
317 | } else if (i + 1 == prev_i) {
| ~~~~~~^~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:322:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
322 | } else if (i > prev_i) {
| ~~^~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:327:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
327 | } else if (i < prev_i) {
| ~~^~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp: In instantiation of 'std::pair<long long unsigned int, long long unsigned int> tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::primary_dimension(std::size_t, std::size_t, std::size_t, std::size_t) const [with bool ROW = false; T = double; IDX = int; U = std::vector<int>; V = std::vector<int>; W = std::vector<long long unsigned int>; std::size_t = long long unsigned int]':
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:226:25: required from 'void tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::primary_dimension_expanded(std::size_t, std::size_t, std::size_t, std::size_t, T*, T) const [with bool ROW = false; T = double; IDX = int; U = std::vector<int>; V = std::vector<int>; W = std::vector<long long unsigned int>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:88:13: required from 'const T* tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::column(std::size_t, T*, std::size_t, std::size_t, tatami::Workspace*) const [with bool ROW = false; T = double; IDX = int; U = std::vector<int>; V = std::vector<int>; W = std::vector<long long unsigned int>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:84:14: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:188:14: warning: variable 'xIt' set but not used [-Wunused-but-set-variable]
188 | auto xIt = values.begin() + pstart;
| ^~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp: In instantiation of 'void tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::secondary_dimension(IDX, std::size_t, std::size_t, tatami::Workspace*, STORE&) const [with STORE = tatami::CompressedSparseMatrix<false, double, int, std::vector<int>, std::vector<int>, std::vector<long long unsigned int> >::raw_store; bool ROW = false; T = double; IDX = int; U = std::vector<int>; V = std::vector<int>; W = std::vector<long long unsigned int>; std::size_t = long long unsigned int]':
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:362:28: required from 'tatami::SparseRange<T, IDX> tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::secondary_dimension_raw(IDX, std::size_t, std::size_t, tatami::Workspace*, T*, IDX*) const [with bool ROW = false; T = double; IDX = int; U = std::vector<int>; V = std::vector<int>; W = std::vector<long long unsigned int>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:106:20: required from 'tatami::SparseRange<T, IDX> tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::sparse_row(std::size_t, T*, IDX*, std::size_t, std::size_t, tatami::Workspace*, bool) const [with bool ROW = false; T = double; IDX = int; U = std::vector<int>; V = std::vector<int>; W = std::vector<long long unsigned int>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:101:25: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:312:23: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
312 | if (i == prev_i + 1) {
| ~~^~~~~~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:317:34: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
317 | } else if (i + 1 == prev_i) {
| ~~~~~~^~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:322:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
322 | } else if (i > prev_i) {
| ~~^~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:327:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
327 | } else if (i < prev_i) {
| ~~^~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp: In instantiation of 'void tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::secondary_dimension(IDX, std::size_t, std::size_t, tatami::Workspace*, STORE&) const [with STORE = tatami::CompressedSparseMatrix<false, double, int, std::vector<double>, std::vector<int>, std::vector<long long unsigned int> >::expanded_store; bool ROW = false; T = double; IDX = int; U = std::vector<double>; V = std::vector<int>; W = std::vector<long long unsigned int>; std::size_t = long long unsigned int]':
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:380:28: required from 'void tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::secondary_dimension_expanded(IDX, std::size_t, std::size_t, tatami::Workspace*, T*, T) const [with bool ROW = false; T = double; IDX = int; U = std::vector<double>; V = std::vector<int>; W = std::vector<long long unsigned int>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:79:13: required from 'const T* tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::row(std::size_t, T*, std::size_t, std::size_t, tatami::Workspace*) const [with bool ROW = false; T = double; IDX = int; U = std::vector<double>; V = std::vector<int>; W = std::vector<long long unsigned int>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:75:14: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:312:23: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
312 | if (i == prev_i + 1) {
| ~~^~~~~~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:317:34: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
317 | } else if (i + 1 == prev_i) {
| ~~~~~~^~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:322:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
322 | } else if (i > prev_i) {
| ~~^~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:327:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
327 | } else if (i < prev_i) {
| ~~^~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp: In instantiation of 'std::pair<long long unsigned int, long long unsigned int> tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::primary_dimension(std::size_t, std::size_t, std::size_t, std::size_t) const [with bool ROW = false; T = double; IDX = int; U = std::vector<double>; V = std::vector<int>; W = std::vector<long long unsigned int>; std::size_t = long long unsigned int]':
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:226:25: required from 'void tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::primary_dimension_expanded(std::size_t, std::size_t, std::size_t, std::size_t, T*, T) const [with bool ROW = false; T = double; IDX = int; U = std::vector<double>; V = std::vector<int>; W = std::vector<long long unsigned int>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:88:13: required from 'const T* tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::column(std::size_t, T*, std::size_t, std::size_t, tatami::Workspace*) const [with bool ROW = false; T = double; IDX = int; U = std::vector<double>; V = std::vector<int>; W = std::vector<long long unsigned int>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:84:14: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:188:14: warning: variable 'xIt' set but not used [-Wunused-but-set-variable]
188 | auto xIt = values.begin() + pstart;
| ^~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp: In instantiation of 'void tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::secondary_dimension(IDX, std::size_t, std::size_t, tatami::Workspace*, STORE&) const [with STORE = tatami::CompressedSparseMatrix<false, double, int, std::vector<double>, std::vector<int>, std::vector<long long unsigned int> >::raw_store; bool ROW = false; T = double; IDX = int; U = std::vector<double>; V = std::vector<int>; W = std::vector<long long unsigned int>; std::size_t = long long unsigned int]':
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:362:28: required from 'tatami::SparseRange<T, IDX> tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::secondary_dimension_raw(IDX, std::size_t, std::size_t, tatami::Workspace*, T*, IDX*) const [with bool ROW = false; T = double; IDX = int; U = std::vector<double>; V = std::vector<int>; W = std::vector<long long unsigned int>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:106:20: required from 'tatami::SparseRange<T, IDX> tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::sparse_row(std::size_t, T*, IDX*, std::size_t, std::size_t, tatami::Workspace*, bool) const [with bool ROW = false; T = double; IDX = int; U = std::vector<double>; V = std::vector<int>; W = std::vector<long long unsigned int>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:101:25: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:312:23: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
312 | if (i == prev_i + 1) {
| ~~^~~~~~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:317:34: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
317 | } else if (i + 1 == prev_i) {
| ~~~~~~^~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:322:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
322 | } else if (i > prev_i) {
| ~~^~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:327:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
327 | } else if (i < prev_i) {
| ~~^~~~~~~~
g++ -std=gnu++17 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I../inst/include/ -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/BiocNeighbors/include' -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c run.cpp -o run.o
In file included from F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/stats/sums.hpp:5,
from F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/tatami.h:19,
from F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/tatami.hpp:4,
from F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/utils.hpp:15,
from F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/SimpleMatrix.hpp:4,
from F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/raticate.hpp:5,
from utils.h:13,
from run.cpp:3:
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/stats/apply.hpp:220: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
220 | #pragma omp parallel
|
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/stats/apply.hpp:234: warning: ignoring '#pragma omp for' [-Wunknown-pragmas]
234 | #pragma omp for schedule(static)
|
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/stats/apply.hpp:267: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
267 | #pragma omp parallel
|
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/stats/apply.hpp:278: warning: ignoring '#pragma omp for' [-Wunknown-pragmas]
278 | #pragma omp for schedule(static)
|
In file included from F:/biocbuild/bbs-3.17-bioc/R/library/BiocNeighbors/include/kmeans/Kmeans.hpp:5,
from F:/biocbuild/bbs-3.17-bioc/R/library/BiocNeighbors/include/knncolle/Kmknn/Kmknn.hpp:7,
from F:/biocbuild/bbs-3.17-bioc/R/library/BiocNeighbors/include/knncolle/knncolle.hpp:8,
from ../inst/include/singlepp/build_indices.hpp:8,
from ../inst/include/singlepp/BasicBuilder.hpp:5,
from ../inst/include/singlepp/Classifier.hpp:5,
from ../inst/include/singlepp/singlepp.hpp:10,
from utils.h:24:
F:/biocbuild/bbs-3.17-bioc/R/library/BiocNeighbors/include/kmeans/HartiganWong.hpp:163: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
163 | #pragma omp parallel for
|
In file included from F:/biocbuild/bbs-3.17-bioc/R/library/BiocNeighbors/include/kmeans/Kmeans.hpp:6:
F:/biocbuild/bbs-3.17-bioc/R/library/BiocNeighbors/include/kmeans/InitializeKmeansPP.hpp:77: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
77 | #pragma omp parallel for
|
In file included from F:/biocbuild/bbs-3.17-bioc/R/library/BiocNeighbors/include/knncolle/knncolle.hpp:19:
F:/biocbuild/bbs-3.17-bioc/R/library/BiocNeighbors/include/knncolle/utils/find_nearest_neighbors.hpp:49: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
49 | #pragma omp parallel for
|
F:/biocbuild/bbs-3.17-bioc/R/library/BiocNeighbors/include/knncolle/utils/find_nearest_neighbors.hpp:92: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
92 | #pragma omp parallel for
|
In file included from ../inst/include/singlepp/annotate_cells.hpp:9,
from ../inst/include/singlepp/BasicScorer.hpp:5,
from ../inst/include/singlepp/Classifier.hpp:6:
../inst/include/singlepp/fine_tune.hpp: In function 'std::pair<int, double> singlepp::fill_labels_in_use(const std::vector<double>&, double, std::vector<int>&)':
../inst/include/singlepp/fine_tune.hpp:30:15: warning: comparison of integer expressions of different signedness: 'std::size_t' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
30 | if (i != best_label && next_score < val) {
| ~~^~~~~~~~~~~~~
../inst/include/singlepp/fine_tune.hpp: In function 'std::pair<int, double> singlepp::replace_labels_in_use(const std::vector<double>&, double, std::vector<int>&)':
../inst/include/singlepp/fine_tune.hpp:56:15: warning: comparison of integer expressions of different signedness: 'std::size_t' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
56 | if (i != best_index && next_score < val) {
| ~~^~~~~~~~~~~~~
In file included from ../inst/include/singlepp/IntegratedScorer.hpp:8,
from ../inst/include/singlepp/singlepp.hpp:12:
../inst/include/singlepp/IntegratedBuilder.hpp: In member function 'std::vector<singlepp::IntegratedReference> singlepp::IntegratedBuilder::finish()':
../inst/include/singlepp/IntegratedBuilder.hpp:438:36: warning: comparison of integer expressions of different signedness: 'const int' and 'std::size_t' {aka 'long long unsigned int'} [-Wsign-compare]
438 | if (it->second < first) {
| ~~~~~~~~~~~^~~~~~~
../inst/include/singlepp/IntegratedBuilder.hpp:441:36: warning: comparison of integer expressions of different signedness: 'const int' and 'std::size_t' {aka 'long long unsigned int'} [-Wsign-compare]
441 | if (it->second > last) {
| ~~~~~~~~~~~^~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/BiocNeighbors/include/knncolle/Kmknn/Kmknn.hpp: In instantiation of 'knncolle::Kmknn<DISTANCE, INDEX_t, DISTANCE_t, QUERY_t, INTERNAL_t>::Kmknn(INDEX_t, INDEX_t, const INPUT_t*, double) [with INPUT_t = double; DISTANCE = knncolle::distances::Euclidean; INDEX_t = int; DISTANCE_t = double; QUERY_t = double; INTERNAL_t = double]':
../inst/include/singlepp/BasicBuilder.hpp:103:127: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/BiocNeighbors/include/knncolle/Kmknn/Kmknn.hpp:116:31: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
116 | for (INDEX_t i = 1; i < ncenters; ++i) {
| ~~^~~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/BiocNeighbors/include/knncolle/Kmknn/Kmknn.hpp:133:35: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
133 | for (INDEX_t c = 0; c < ncenters; ++c) {
| ~~^~~~~~~~~~
../inst/include/singlepp/fine_tune.hpp: In instantiation of 'std::pair<int, double> singlepp::FineTuner::run(singlepp::RankedVector<double, int>&, const std::vector<singlepp::Reference>&, const singlepp::Markers&, std::vector<double>&, double, double) [with bool test = false; singlepp::RankedVector<double, int> = std::vector<std::pair<double, int>, std::allocator<std::pair<double, int> > >; singlepp::Markers = std::vector<std::vector<std::vector<int> > >]':
../inst/include/singlepp/annotate_cells.hpp:120:36: required from here
../inst/include/singlepp/fine_tune.hpp:136:24: warning: unused variable 'NR' [-Wunused-variable]
136 | size_t NR = curref.index->ndim();
| ^~
In file included from ../inst/include/singlepp/singlepp.hpp:15:
../inst/include/singlepp/load_references.hpp: In instantiation of 'singlepp::Markers singlepp::load_markers_internal(std::size_t, std::size_t, Reader&) [with Reader = byteme::RawFileReader; Markers = std::vector<std::vector<std::vector<int> > >; std::size_t = long long unsigned int]':
../inst/include/singlepp/load_references.hpp:598:33: required from here
../inst/include/singlepp/load_references.hpp:490:10: warning: unused variable 'continuing' [-Wunused-variable]
490 | bool continuing = false;
| ^~~~~~~~~~
In file included from F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/raticate.hpp:11:
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/DelayedAbind.hpp: In instantiation of 'raticate::Parsed<Data, Index> raticate::parse_DelayedAbind(Rcpp::RObject) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]':
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/raticate.hpp:76:53: required from 'raticate::Parsed<Data, Index> raticate::parse(Rcpp::RObject, bool) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]'
run.cpp:14:47: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/DelayedAbind.hpp:19:26: warning: comparison of integer expressions of different signedness: 'std::size_t' {aka 'long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare]
19 | for (size_t s = 0; s < seeds.size(); ++s) {
| ~~^~~~~~~~~~~~~~
In file included from F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/raticate.hpp:6:
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/SparseArraySeed.hpp: In instantiation of 'raticate::Parsed<Data, Index> raticate::parse_SparseArraySeed(Rcpp::RObject, const V&) [with Data = double; Index = int; V = Rcpp::Vector<14, Rcpp::PreserveStorage>; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]':
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/SparseArraySeed.hpp:113:52: required from 'raticate::Parsed<Data, Index> raticate::parse_SparseArraySeed(Rcpp::RObject) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/raticate.hpp:61:56: required from 'raticate::Parsed<Data, Index> raticate::parse(Rcpp::RObject, bool) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]'
run.cpp:14:47: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/SparseArraySeed.hpp:23:13: warning: comparison of integer expressions of different signedness: 'const std::size_t' {aka 'const long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare]
23 | if (nnz != val.size()) {
| ~~~~^~~~~~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/SparseArraySeed.hpp: In instantiation of 'raticate::Parsed<Data, Index> raticate::parse_SparseArraySeed(Rcpp::RObject, const V&) [with Data = double; Index = int; V = Rcpp::Vector<13>; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]':
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/SparseArraySeed.hpp:116:52: required from 'raticate::Parsed<Data, Index> raticate::parse_SparseArraySeed(Rcpp::RObject) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/raticate.hpp:61:56: required from 'raticate::Parsed<Data, Index> raticate::parse(Rcpp::RObject, bool) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]'
run.cpp:14:47: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/SparseArraySeed.hpp:23:13: warning: comparison of integer expressions of different signedness: 'const std::size_t' {aka 'const long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare]
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/SparseArraySeed.hpp: In instantiation of 'raticate::Parsed<Data, Index> raticate::parse_SparseArraySeed(Rcpp::RObject, const V&) [with Data = double; Index = int; V = Rcpp::Vector<10, Rcpp::PreserveStorage>; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]':
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/SparseArraySeed.hpp:119:52: required from 'raticate::Parsed<Data, Index> raticate::parse_SparseArraySeed(Rcpp::RObject) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/raticate.hpp:61:56: required from 'raticate::Parsed<Data, Index> raticate::parse(Rcpp::RObject, bool) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]'
run.cpp:14:47: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/SparseArraySeed.hpp:23:13: warning: comparison of integer expressions of different signedness: 'const std::size_t' {aka 'const long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare]
F:/biocbuild/bbs-3.17-bioc/R/library/BiocNeighbors/include/kmeans/InitializeKmeansPP.hpp: In instantiation of 'std::vector<IDX> kmeans::InitializeKmeansPP<DATA_t, CLUSTER_t, INDEX_t>::run(int, INDEX_t, const DATA_t*, CLUSTER_t) [with DATA_t = double; CLUSTER_t = int; INDEX_t = int]':
F:/biocbuild/bbs-3.17-bioc/R/library/BiocNeighbors/include/kmeans/InitializeKmeansPP.hpp:136:25: required from 'CLUSTER_t kmeans::InitializeKmeansPP<DATA_t, CLUSTER_t, INDEX_t>::run(int, INDEX_t, const DATA_t*, CLUSTER_t, DATA_t*, CLUSTER_t*) [with DATA_t = double; CLUSTER_t = int; INDEX_t = int]'
F:/biocbuild/bbs-3.17-bioc/R/library/BiocNeighbors/include/kmeans/Kmeans.hpp:91:32: required from 'kmeans::Details<DATA_t, INDEX_t> kmeans::Kmeans<DATA_t, CLUSTER_t, INDEX_t>::run(int, INDEX_t, const DATA_t*, CLUSTER_t, DATA_t*, CLUSTER_t*, kmeans::Initialize<DATA_t, CLUSTER_t, INDEX_t>*, kmeans::Refine<DATA_t, CLUSTER_t, INDEX_t>*) [with DATA_t = double; CLUSTER_t = int; INDEX_t = int]'
F:/biocbuild/bbs-3.17-bioc/R/library/BiocNeighbors/include/knncolle/Kmknn/Kmknn.hpp:106:60: required from 'knncolle::Kmknn<DISTANCE, INDEX_t, DISTANCE_t, QUERY_t, INTERNAL_t>::Kmknn(INDEX_t, INDEX_t, const INPUT_t*, double) [with INPUT_t = double; DISTANCE = knncolle::distances::Euclidean; INDEX_t = int; DISTANCE_t = double; QUERY_t = double; INTERNAL_t = double]'
../inst/include/singlepp/BasicBuilder.hpp:103:127: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/BiocNeighbors/include/kmeans/InitializeKmeansPP.hpp:73:21: warning: variable 'counter' set but not used [-Wunused-but-set-variable]
73 | INDEX_t counter = 0;
| ^~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/BiocNeighbors/include/kmeans/HartiganWong.hpp: In instantiation of 'void kmeans::HartiganWong<DATA_t, CLUSTER_t, INDEX_t>::optimal_transfer(INDEX_t&) [with DATA_t = double; CLUSTER_t = int; INDEX_t = int]':
F:/biocbuild/bbs-3.17-bioc/R/library/BiocNeighbors/include/kmeans/HartiganWong.hpp:235:13: required from 'kmeans::Details<DATA_t, INDEX_t> kmeans::HartiganWong<DATA_t, CLUSTER_t, INDEX_t>::run(int, INDEX_t, const DATA_t*, CLUSTER_t, DATA_t*, CLUSTER_t*) [with DATA_t = double; CLUSTER_t = int; INDEX_t = int]'
F:/biocbuild/bbs-3.17-bioc/R/library/BiocNeighbors/include/kmeans/Kmeans.hpp:98:26: required from 'kmeans::Details<DATA_t, INDEX_t> kmeans::Kmeans<DATA_t, CLUSTER_t, INDEX_t>::run(int, INDEX_t, const DATA_t*, CLUSTER_t, DATA_t*, CLUSTER_t*, kmeans::Initialize<DATA_t, CLUSTER_t, INDEX_t>*, kmeans::Refine<DATA_t, CLUSTER_t, INDEX_t>*) [with DATA_t = double; CLUSTER_t = int; INDEX_t = int]'
F:/biocbuild/bbs-3.17-bioc/R/library/BiocNeighbors/include/knncolle/Kmknn/Kmknn.hpp:106:60: required from 'knncolle::Kmknn<DISTANCE, INDEX_t, DISTANCE_t, QUERY_t, INTERNAL_t>::Kmknn(INDEX_t, INDEX_t, const INPUT_t*, double) [with INPUT_t = double; DISTANCE = knncolle::distances::Euclidean; INDEX_t = int; DISTANCE_t = double; QUERY_t = double; INTERNAL_t = double]'
../inst/include/singlepp/BasicBuilder.hpp:103:127: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/BiocNeighbors/include/kmeans/HartiganWong.hpp:344:41: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
344 | if (obs >= live[l1] && obs >= live[cen] || cen == l1 || cen == ll) {
| ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
In file included from F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/tatami.h:12:
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/utils/compress_sparse_triplets.hpp: In instantiation of 'std::vector<long long unsigned int> tatami::compress_sparse_triplets(std::size_t, std::size_t, U&, V&, W&) [with bool ROW = false; U = std::vector<double>; V = std::vector<int>; W = std::vector<int>; std::size_t = long long unsigned int]':
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/SparseArraySeed.hpp:88:56: required from 'raticate::Parsed<Data, Index> raticate::parse_SparseArraySeed(Rcpp::RObject, const V&) [with Data = double; Index = int; V = Rcpp::Vector<14, Rcpp::PreserveStorage>; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/SparseArraySeed.hpp:113:52: required from 'raticate::Parsed<Data, Index> raticate::parse_SparseArraySeed(Rcpp::RObject) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/raticate.hpp:61:56: required from 'raticate::Parsed<Data, Index> raticate::parse(Rcpp::RObject, bool) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]'
run.cpp:14:47: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/utils/compress_sparse_triplets.hpp:127:28: warning: comparison of integer expressions of different signedness: '__gnu_cxx::__alloc_traits<std::allocator<long long unsigned int>, long long unsigned int>::value_type' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
127 | if (indices[i] == -1) {
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/utils/compress_sparse_triplets.hpp: In instantiation of 'std::vector<long long unsigned int> tatami::compress_sparse_triplets(std::size_t, std::size_t, U&, V&, W&) [with bool ROW = false; U = std::vector<int>; V = std::vector<int>; W = std::vector<int>; std::size_t = long long unsigned int]':
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/SparseArraySeed.hpp:88:56: required from 'raticate::Parsed<Data, Index> raticate::parse_SparseArraySeed(Rcpp::RObject, const V&) [with Data = double; Index = int; V = Rcpp::Vector<13>; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/SparseArraySeed.hpp:116:52: required from 'raticate::Parsed<Data, Index> raticate::parse_SparseArraySeed(Rcpp::RObject) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/raticate.hpp:61:56: required from 'raticate::Parsed<Data, Index> raticate::parse(Rcpp::RObject, bool) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]'
run.cpp:14:47: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/utils/compress_sparse_triplets.hpp:127:28: warning: comparison of integer expressions of different signedness: '__gnu_cxx::__alloc_traits<std::allocator<long long unsigned int>, long long unsigned int>::value_type' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
In file included from F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/tatami.h:7:
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/DelayedSubset.hpp: In instantiation of 'tatami::DelayedSubset<MARGIN, T, IDX, V>::DelayedSubset(std::shared_ptr<const tatami::Matrix<T, IDX> >, V) [with int MARGIN = 0; T = double; IDX = int; V = std::vector<int>]':
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/DelayedSubset.hpp:322:9: required from 'std::shared_ptr<_Tp> tatami::make_DelayedSubset(std::shared_ptr<_Tp>, V) [with int MARGIN = 0; MAT = Matrix<double, int>; V = std::vector<int>]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/DelayedSubset.hpp:28:48: required from 'raticate::Parsed<Data, Index> raticate::parse_DelayedSubset(Rcpp::RObject) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/raticate.hpp:72:54: required from 'raticate::Parsed<Data, Index> raticate::parse(Rcpp::RObject, bool) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]'
run.cpp:14:47: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/DelayedSubset.hpp:48:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
48 | if (chosen != indices.size()) {
| ~~~~~~~^~~~~~~~~~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/DelayedSubset.hpp: In instantiation of 'tatami::DelayedSubset<MARGIN, T, IDX, V>::DelayedSubset(std::shared_ptr<const tatami::Matrix<T, IDX> >, V) [with int MARGIN = 1; T = double; IDX = int; V = std::vector<int>]':
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/DelayedSubset.hpp:322:9: required from 'std::shared_ptr<_Tp> tatami::make_DelayedSubset(std::shared_ptr<_Tp>, V) [with int MARGIN = 1; MAT = Matrix<double, int>; V = std::vector<int>]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/DelayedSubset.hpp:38:48: required from 'raticate::Parsed<Data, Index> raticate::parse_DelayedSubset(Rcpp::RObject) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/raticate.hpp:72:54: required from 'raticate::Parsed<Data, Index> raticate::parse(Rcpp::RObject, bool) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]'
run.cpp:14:47: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/DelayedSubset.hpp:48:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
In file included from F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/tatami.h:5:
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp: In instantiation of 'void tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::check_values(bool) [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView<double>; V = tatami::ArrayView<int>; W = tatami::ArrayView<int>]':
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:55:9: required from 'tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::CompressedSparseMatrix(std::size_t, std::size_t, U, V, W, bool) [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView<double>; V = tatami::ArrayView<int>; W = tatami::ArrayView<int>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/CSparseMatrix.hpp:24:9: required from 'raticate::Parsed<Data, Index> raticate::parse_CSparseMatrix(Rcpp::RObject, const V&) [with Data = double; Index = int; V = Rcpp::Vector<14, Rcpp::PreserveStorage>; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/CSparseMatrix.hpp:40:31: required from 'raticate::Parsed<Data, Index> raticate::parse_dgCMatrix(Rcpp::RObject) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/raticate.hpp:63:50: required from 'raticate::Parsed<Data, Index> raticate::parse(Rcpp::RObject, bool) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]'
run.cpp:14:47: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:154:41: warning: comparison of integer expressions of different signedness: 'int' and 'std::size_t' {aka 'long long unsigned int'} [-Wsign-compare]
154 | if (indptrs[indptrs.size() - 1] != indices.size()) {
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:167:32: warning: comparison of integer expressions of different signedness: 'std::size_t' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
167 | while (counter < indptrs[i]) {
| ~~~~~~~~^~~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp: In instantiation of 'void tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::check_values(bool) [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView<int>; V = tatami::ArrayView<int>; W = tatami::ArrayView<int>]':
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:55:9: required from 'tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::CompressedSparseMatrix(std::size_t, std::size_t, U, V, W, bool) [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView<int>; V = tatami::ArrayView<int>; W = tatami::ArrayView<int>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/CSparseMatrix.hpp:24:9: required from 'raticate::Parsed<Data, Index> raticate::parse_CSparseMatrix(Rcpp::RObject, const V&) [with Data = double; Index = int; V = Rcpp::Vector<10, Rcpp::PreserveStorage>; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/CSparseMatrix.hpp:46:31: required from 'raticate::Parsed<Data, Index> raticate::parse_lgCMatrix(Rcpp::RObject) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/raticate.hpp:65:50: required from 'raticate::Parsed<Data, Index> raticate::parse(Rcpp::RObject, bool) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]'
run.cpp:14:47: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:154:41: warning: comparison of integer expressions of different signedness: 'int' and 'std::size_t' {aka 'long long unsigned int'} [-Wsign-compare]
154 | if (indptrs[indptrs.size() - 1] != indices.size()) {
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:167:32: warning: comparison of integer expressions of different signedness: 'std::size_t' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
167 | while (counter < indptrs[i]) {
| ~~~~~~~~^~~~~~~~~~
In file included from F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/raticate.hpp:12:
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp: In instantiation of 'void raticate::UnknownMatrixCore<Data, Index>::check_quick_dense_dims(const Object&, std::size_t, std::size_t) const [with Object = Rcpp::Vector<10, Rcpp::PreserveStorage>; Data = double; Index = int; std::size_t = long long unsigned int]':
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:200:35: required from 'void raticate::UnknownMatrixCore<Data, Index>::quick_dense_extractor_raw(std::size_t, Data*, std::size_t, std::size_t) const [with bool byrow = true; Data = double; Index = int; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:443:73: required from 'void raticate::UnknownEvaluator<Data, Index>::harvest() [with Data = double; Index = int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:554:31: required from 'void raticate::ParallelCoordinator::run(std::size_t, Function, std::size_t) [with Data = double; Index = int; Function = singlepp::annotate_cells_simple(const tatami::Matrix<double, int>*, std::size_t, const int*, const std::vector<Reference>&, const Markers&, double, bool, double, int*, std::vector<double*>&, double*, int)::<lambda(std::size_t, std::size_t)>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/parallelize.hpp:37:53: required from 'void raticate::parallelize(std::size_t, Function, std::size_t) [with Data = double; Index = int; Function = singlepp::annotate_cells_simple(const tatami::Matrix<double, int>*, std::size_t, const int*, const std::vector<Reference>&, const Markers&, double, bool, double, int*, std::vector<double*>&, double*, int)::<lambda(std::size_t, std::size_t)>; std::size_t = long long unsigned int]'
utils.h:17:39: required from 'void parallelize(std::size_t, Function, int) [with Function = singlepp::annotate_cells_simple(const tatami::Matrix<double, int>*, std::size_t, const int*, const std::vector<Reference>&, const Markers&, double, bool, double, int*, std::vector<double*>&, double*, int)::<lambda(std::size_t, std::size_t)>; std::size_t = long long unsigned int]'
../inst/include/singlepp/annotate_cells.hpp:64:29: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:187:24: warning: comparison of integer expressions of different signedness: 'R_xlen_t' {aka 'long long int'} and 'std::size_t' {aka 'long long unsigned int'} [-Wsign-compare]
187 | if (obj.size() != last - first) {
| ~~~~~~~~~~~^~~~~~~~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp: In instantiation of 'void raticate::UnknownMatrixCore<Data, Index>::check_quick_dense_dims(const Object&, std::size_t, std::size_t) const [with Object = Rcpp::Vector<13>; Data = double; Index = int; std::size_t = long long unsigned int]':
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:205:35: required from 'void raticate::UnknownMatrixCore<Data, Index>::quick_dense_extractor_raw(std::size_t, Data*, std::size_t, std::size_t) const [with bool byrow = true; Data = double; Index = int; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:443:73: required from 'void raticate::UnknownEvaluator<Data, Index>::harvest() [with Data = double; Index = int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:554:31: required from 'void raticate::ParallelCoordinator::run(std::size_t, Function, std::size_t) [with Data = double; Index = int; Function = singlepp::annotate_cells_simple(const tatami::Matrix<double, int>*, std::size_t, const int*, const std::vector<Reference>&, const Markers&, double, bool, double, int*, std::vector<double*>&, double*, int)::<lambda(std::size_t, std::size_t)>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/parallelize.hpp:37:53: required from 'void raticate::parallelize(std::size_t, Function, std::size_t) [with Data = double; Index = int; Function = singlepp::annotate_cells_simple(const tatami::Matrix<double, int>*, std::size_t, const int*, const std::vector<Reference>&, const Markers&, double, bool, double, int*, std::vector<double*>&, double*, int)::<lambda(std::size_t, std::size_t)>; std::size_t = long long unsigned int]'
utils.h:17:39: required from 'void parallelize(std::size_t, Function, int) [with Function = singlepp::annotate_cells_simple(const tatami::Matrix<double, int>*, std::size_t, const int*, const std::vector<Reference>&, const Markers&, double, bool, double, int*, std::vector<double*>&, double*, int)::<lambda(std::size_t, std::size_t)>; std::size_t = long long unsigned int]'
../inst/include/singlepp/annotate_cells.hpp:64:29: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:187:24: warning: comparison of integer expressions of different signedness: 'R_xlen_t' {aka 'long long int'} and 'std::size_t' {aka 'long long unsigned int'} [-Wsign-compare]
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp: In instantiation of 'void raticate::UnknownMatrixCore<Data, Index>::check_quick_dense_dims(const Object&, std::size_t, std::size_t) const [with Object = Rcpp::Vector<14, Rcpp::PreserveStorage>; Data = double; Index = int; std::size_t = long long unsigned int]':
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:210:35: required from 'void raticate::UnknownMatrixCore<Data, Index>::quick_dense_extractor_raw(std::size_t, Data*, std::size_t, std::size_t) const [with bool byrow = true; Data = double; Index = int; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:443:73: required from 'void raticate::UnknownEvaluator<Data, Index>::harvest() [with Data = double; Index = int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:554:31: required from 'void raticate::ParallelCoordinator::run(std::size_t, Function, std::size_t) [with Data = double; Index = int; Function = singlepp::annotate_cells_simple(const tatami::Matrix<double, int>*, std::size_t, const int*, const std::vector<Reference>&, const Markers&, double, bool, double, int*, std::vector<double*>&, double*, int)::<lambda(std::size_t, std::size_t)>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/parallelize.hpp:37:53: required from 'void raticate::parallelize(std::size_t, Function, std::size_t) [with Data = double; Index = int; Function = singlepp::annotate_cells_simple(const tatami::Matrix<double, int>*, std::size_t, const int*, const std::vector<Reference>&, const Markers&, double, bool, double, int*, std::vector<double*>&, double*, int)::<lambda(std::size_t, std::size_t)>; std::size_t = long long unsigned int]'
utils.h:17:39: required from 'void parallelize(std::size_t, Function, int) [with Function = singlepp::annotate_cells_simple(const tatami::Matrix<double, int>*, std::size_t, const int*, const std::vector<Reference>&, const Markers&, double, bool, double, int*, std::vector<double*>&, double*, int)::<lambda(std::size_t, std::size_t)>; std::size_t = long long unsigned int]'
../inst/include/singlepp/annotate_cells.hpp:64:29: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:187:24: warning: comparison of integer expressions of different signedness: 'R_xlen_t' {aka 'long long int'} and 'std::size_t' {aka 'long long unsigned int'} [-Wsign-compare]
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp: In instantiation of 'void raticate::UnknownMatrixCore<Data, Index>::check_quick_sparse_dims(const Object&, std::size_t) const [with Object = Rcpp::Vector<10, Rcpp::PreserveStorage>; Data = double; Index = int; std::size_t = long long unsigned int]':
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:298:36: required from 'void raticate::UnknownMatrixCore<Data, Index>::quick_sparse_extractor_raw(std::size_t, std::size_t*, Data*, Index*, std::size_t, std::size_t) const [with bool byrow = true; Data = double; Index = int; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:457:74: required from 'void raticate::UnknownEvaluator<Data, Index>::harvest() [with Data = double; Index = int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:554:31: required from 'void raticate::ParallelCoordinator::run(std::size_t, Function, std::size_t) [with Data = double; Index = int; Function = singlepp::annotate_cells_simple(const tatami::Matrix<double, int>*, std::size_t, const int*, const std::vector<Reference>&, const Markers&, double, bool, double, int*, std::vector<double*>&, double*, int)::<lambda(std::size_t, std::size_t)>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/parallelize.hpp:37:53: required from 'void raticate::parallelize(std::size_t, Function, std::size_t) [with Data = double; Index = int; Function = singlepp::annotate_cells_simple(const tatami::Matrix<double, int>*, std::size_t, const int*, const std::vector<Reference>&, const Markers&, double, bool, double, int*, std::vector<double*>&, double*, int)::<lambda(std::size_t, std::size_t)>; std::size_t = long long unsigned int]'
utils.h:17:39: required from 'void parallelize(std::size_t, Function, int) [with Function = singlepp::annotate_cells_simple(const tatami::Matrix<double, int>*, std::size_t, const int*, const std::vector<Reference>&, const Markers&, double, bool, double, int*, std::vector<double*>&, double*, int)::<lambda(std::size_t, std::size_t)>; std::size_t = long long unsigned int]'
../inst/include/singlepp/annotate_cells.hpp:64:29: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:246:24: warning: comparison of integer expressions of different signedness: 'R_xlen_t' {aka 'long long int'} and 'std::size_t' {aka 'long long unsigned int'} [-Wsign-compare]
246 | if (obj.size() != nnzero) {
| ~~~~~~~~~~~^~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp: In instantiation of 'void raticate::UnknownMatrixCore<Data, Index>::check_quick_sparse_dims(const Object&, std::size_t) const [with Object = Rcpp::Vector<13>; Data = double; Index = int; std::size_t = long long unsigned int]':
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:303:36: required from 'void raticate::UnknownMatrixCore<Data, Index>::quick_sparse_extractor_raw(std::size_t, std::size_t*, Data*, Index*, std::size_t, std::size_t) const [with bool byrow = true; Data = double; Index = int; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:457:74: required from 'void raticate::UnknownEvaluator<Data, Index>::harvest() [with Data = double; Index = int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:554:31: required from 'void raticate::ParallelCoordinator::run(std::size_t, Function, std::size_t) [with Data = double; Index = int; Function = singlepp::annotate_cells_simple(const tatami::Matrix<double, int>*, std::size_t, const int*, const std::vector<Reference>&, const Markers&, double, bool, double, int*, std::vector<double*>&, double*, int)::<lambda(std::size_t, std::size_t)>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/parallelize.hpp:37:53: required from 'void raticate::parallelize(std::size_t, Function, std::size_t) [with Data = double; Index = int; Function = singlepp::annotate_cells_simple(const tatami::Matrix<double, int>*, std::size_t, const int*, const std::vector<Reference>&, const Markers&, double, bool, double, int*, std::vector<double*>&, double*, int)::<lambda(std::size_t, std::size_t)>; std::size_t = long long unsigned int]'
utils.h:17:39: required from 'void parallelize(std::size_t, Function, int) [with Function = singlepp::annotate_cells_simple(const tatami::Matrix<double, int>*, std::size_t, const int*, const std::vector<Reference>&, const Markers&, double, bool, double, int*, std::vector<double*>&, double*, int)::<lambda(std::size_t, std::size_t)>; std::size_t = long long unsigned int]'
../inst/include/singlepp/annotate_cells.hpp:64:29: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:246:24: warning: comparison of integer expressions of different signedness: 'R_xlen_t' {aka 'long long int'} and 'std::size_t' {aka 'long long unsigned int'} [-Wsign-compare]
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp: In instantiation of 'void raticate::UnknownMatrixCore<Data, Index>::check_quick_sparse_dims(const Object&, std::size_t) const [with Object = Rcpp::Vector<14, Rcpp::PreserveStorage>; Data = double; Index = int; std::size_t = long long unsigned int]':
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:308:36: required from 'void raticate::UnknownMatrixCore<Data, Index>::quick_sparse_extractor_raw(std::size_t, std::size_t*, Data*, Index*, std::size_t, std::size_t) const [with bool byrow = true; Data = double; Index = int; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:457:74: required from 'void raticate::UnknownEvaluator<Data, Index>::harvest() [with Data = double; Index = int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:554:31: required from 'void raticate::ParallelCoordinator::run(std::size_t, Function, std::size_t) [with Data = double; Index = int; Function = singlepp::annotate_cells_simple(const tatami::Matrix<double, int>*, std::size_t, const int*, const std::vector<Reference>&, const Markers&, double, bool, double, int*, std::vector<double*>&, double*, int)::<lambda(std::size_t, std::size_t)>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/parallelize.hpp:37:53: required from 'void raticate::parallelize(std::size_t, Function, std::size_t) [with Data = double; Index = int; Function = singlepp::annotate_cells_simple(const tatami::Matrix<double, int>*, std::size_t, const int*, const std::vector<Reference>&, const Markers&, double, bool, double, int*, std::vector<double*>&, double*, int)::<lambda(std::size_t, std::size_t)>; std::size_t = long long unsigned int]'
utils.h:17:39: required from 'void parallelize(std::size_t, Function, int) [with Function = singlepp::annotate_cells_simple(const tatami::Matrix<double, int>*, std::size_t, const int*, const std::vector<Reference>&, const Markers&, double, bool, double, int*, std::vector<double*>&, double*, int)::<lambda(std::size_t, std::size_t)>; std::size_t = long long unsigned int]'
../inst/include/singlepp/annotate_cells.hpp:64:29: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:246:24: warning: comparison of integer expressions of different signedness: 'R_xlen_t' {aka 'long long int'} and 'std::size_t' {aka 'long long unsigned int'} [-Wsign-compare]
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp: In instantiation of 'void tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::secondary_dimension(IDX, std::size_t, std::size_t, tatami::Workspace*, STORE&) const [with STORE = tatami::CompressedSparseMatrix<false, double, int, tatami::ArrayView<int>, tatami::ArrayView<int>, tatami::ArrayView<int> >::expanded_store; bool ROW = false; T = double; IDX = int; U = tatami::ArrayView<int>; V = tatami::ArrayView<int>; W = tatami::ArrayView<int>; std::size_t = long long unsigned int]':
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:380:28: required from 'void tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::secondary_dimension_expanded(IDX, std::size_t, std::size_t, tatami::Workspace*, T*, T) const [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView<int>; V = tatami::ArrayView<int>; W = tatami::ArrayView<int>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:79:13: required from 'const T* tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::row(std::size_t, T*, std::size_t, std::size_t, tatami::Workspace*) const [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView<int>; V = tatami::ArrayView<int>; W = tatami::ArrayView<int>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:75:14: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:312:23: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
312 | if (i == prev_i + 1) {
| ~~^~~~~~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:317:34: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
317 | } else if (i + 1 == prev_i) {
| ~~~~~~^~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:322:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
322 | } else if (i > prev_i) {
| ~~^~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:327:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
327 | } else if (i < prev_i) {
| ~~^~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp: In instantiation of 'std::pair<long long unsigned int, long long unsigned int> tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::primary_dimension(std::size_t, std::size_t, std::size_t, std::size_t) const [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView<int>; V = tatami::ArrayView<int>; W = tatami::ArrayView<int>; std::size_t = long long unsigned int]':
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:226:25: required from 'void tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::primary_dimension_expanded(std::size_t, std::size_t, std::size_t, std::size_t, T*, T) const [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView<int>; V = tatami::ArrayView<int>; W = tatami::ArrayView<int>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:88:13: required from 'const T* tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::column(std::size_t, T*, std::size_t, std::size_t, tatami::Workspace*) const [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView<int>; V = tatami::ArrayView<int>; W = tatami::ArrayView<int>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:84:14: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:188:14: warning: unused variable 'xIt' [-Wunused-variable]
188 | auto xIt = values.begin() + pstart;
| ^~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp: In instantiation of 'void tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::secondary_dimension(IDX, std::size_t, std::size_t, tatami::Workspace*, STORE&) const [with STORE = tatami::CompressedSparseMatrix<false, double, int, tatami::ArrayView<int>, tatami::ArrayView<int>, tatami::ArrayView<int> >::raw_store; bool ROW = false; T = double; IDX = int; U = tatami::ArrayView<int>; V = tatami::ArrayView<int>; W = tatami::ArrayView<int>; std::size_t = long long unsigned int]':
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:362:28: required from 'tatami::SparseRange<T, IDX> tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::secondary_dimension_raw(IDX, std::size_t, std::size_t, tatami::Workspace*, T*, IDX*) const [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView<int>; V = tatami::ArrayView<int>; W = tatami::ArrayView<int>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:106:20: required from 'tatami::SparseRange<T, IDX> tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::sparse_row(std::size_t, T*, IDX*, std::size_t, std::size_t, tatami::Workspace*, bool) const [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView<int>; V = tatami::ArrayView<int>; W = tatami::ArrayView<int>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:101:25: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:312:23: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
312 | if (i == prev_i + 1) {
| ~~^~~~~~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:317:34: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
317 | } else if (i + 1 == prev_i) {
| ~~~~~~^~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:322:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
322 | } else if (i > prev_i) {
| ~~^~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:327:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
327 | } else if (i < prev_i) {
| ~~^~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp: In instantiation of 'void tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::secondary_dimension(IDX, std::size_t, std::size_t, tatami::Workspace*, STORE&) const [with STORE = tatami::CompressedSparseMatrix<false, double, int, tatami::ArrayView<double>, tatami::ArrayView<int>, tatami::ArrayView<int> >::expanded_store; bool ROW = false; T = double; IDX = int; U = tatami::ArrayView<double>; V = tatami::ArrayView<int>; W = tatami::ArrayView<int>; std::size_t = long long unsigned int]':
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:380:28: required from 'void tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::secondary_dimension_expanded(IDX, std::size_t, std::size_t, tatami::Workspace*, T*, T) const [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView<double>; V = tatami::ArrayView<int>; W = tatami::ArrayView<int>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:79:13: required from 'const T* tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::row(std::size_t, T*, std::size_t, std::size_t, tatami::Workspace*) const [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView<double>; V = tatami::ArrayView<int>; W = tatami::ArrayView<int>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:75:14: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:312:23: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
312 | if (i == prev_i + 1) {
| ~~^~~~~~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:317:34: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
317 | } else if (i + 1 == prev_i) {
| ~~~~~~^~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:322:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
322 | } else if (i > prev_i) {
| ~~^~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:327:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
327 | } else if (i < prev_i) {
| ~~^~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp: In instantiation of 'std::pair<long long unsigned int, long long unsigned int> tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::primary_dimension(std::size_t, std::size_t, std::size_t, std::size_t) const [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView<double>; V = tatami::ArrayView<int>; W = tatami::ArrayView<int>; std::size_t = long long unsigned int]':
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:226:25: required from 'void tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::primary_dimension_expanded(std::size_t, std::size_t, std::size_t, std::size_t, T*, T) const [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView<double>; V = tatami::ArrayView<int>; W = tatami::ArrayView<int>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:88:13: required from 'const T* tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::column(std::size_t, T*, std::size_t, std::size_t, tatami::Workspace*) const [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView<double>; V = tatami::ArrayView<int>; W = tatami::ArrayView<int>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:84:14: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:188:14: warning: unused variable 'xIt' [-Wunused-variable]
188 | auto xIt = values.begin() + pstart;
| ^~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp: In instantiation of 'void tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::secondary_dimension(IDX, std::size_t, std::size_t, tatami::Workspace*, STORE&) const [with STORE = tatami::CompressedSparseMatrix<false, double, int, tatami::ArrayView<double>, tatami::ArrayView<int>, tatami::ArrayView<int> >::raw_store; bool ROW = false; T = double; IDX = int; U = tatami::ArrayView<double>; V = tatami::ArrayView<int>; W = tatami::ArrayView<int>; std::size_t = long long unsigned int]':
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:362:28: required from 'tatami::SparseRange<T, IDX> tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::secondary_dimension_raw(IDX, std::size_t, std::size_t, tatami::Workspace*, T*, IDX*) const [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView<double>; V = tatami::ArrayView<int>; W = tatami::ArrayView<int>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:106:20: required from 'tatami::SparseRange<T, IDX> tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::sparse_row(std::size_t, T*, IDX*, std::size_t, std::size_t, tatami::Workspace*, bool) const [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView<double>; V = tatami::ArrayView<int>; W = tatami::ArrayView<int>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:101:25: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:312:23: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
312 | if (i == prev_i + 1) {
| ~~^~~~~~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:317:34: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
317 | } else if (i + 1 == prev_i) {
| ~~~~~~^~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:322:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
322 | } else if (i > prev_i) {
| ~~^~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:327:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
327 | } else if (i < prev_i) {
| ~~^~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp: In instantiation of 'void tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::secondary_dimension(IDX, std::size_t, std::size_t, tatami::Workspace*, STORE&) const [with STORE = tatami::CompressedSparseMatrix<false, double, int, std::vector<int>, std::vector<int>, std::vector<long long unsigned int> >::expanded_store; bool ROW = false; T = double; IDX = int; U = std::vector<int>; V = std::vector<int>; W = std::vector<long long unsigned int>; std::size_t = long long unsigned int]':
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:380:28: required from 'void tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::secondary_dimension_expanded(IDX, std::size_t, std::size_t, tatami::Workspace*, T*, T) const [with bool ROW = false; T = double; IDX = int; U = std::vector<int>; V = std::vector<int>; W = std::vector<long long unsigned int>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:79:13: required from 'const T* tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::row(std::size_t, T*, std::size_t, std::size_t, tatami::Workspace*) const [with bool ROW = false; T = double; IDX = int; U = std::vector<int>; V = std::vector<int>; W = std::vector<long long unsigned int>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:75:14: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:312:23: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
312 | if (i == prev_i + 1) {
| ~~^~~~~~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:317:34: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
317 | } else if (i + 1 == prev_i) {
| ~~~~~~^~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:322:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
322 | } else if (i > prev_i) {
| ~~^~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:327:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
327 | } else if (i < prev_i) {
| ~~^~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp: In instantiation of 'std::pair<long long unsigned int, long long unsigned int> tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::primary_dimension(std::size_t, std::size_t, std::size_t, std::size_t) const [with bool ROW = false; T = double; IDX = int; U = std::vector<int>; V = std::vector<int>; W = std::vector<long long unsigned int>; std::size_t = long long unsigned int]':
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:226:25: required from 'void tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::primary_dimension_expanded(std::size_t, std::size_t, std::size_t, std::size_t, T*, T) const [with bool ROW = false; T = double; IDX = int; U = std::vector<int>; V = std::vector<int>; W = std::vector<long long unsigned int>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:88:13: required from 'const T* tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::column(std::size_t, T*, std::size_t, std::size_t, tatami::Workspace*) const [with bool ROW = false; T = double; IDX = int; U = std::vector<int>; V = std::vector<int>; W = std::vector<long long unsigned int>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:84:14: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:188:14: warning: variable 'xIt' set but not used [-Wunused-but-set-variable]
188 | auto xIt = values.begin() + pstart;
| ^~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp: In instantiation of 'void tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::secondary_dimension(IDX, std::size_t, std::size_t, tatami::Workspace*, STORE&) const [with STORE = tatami::CompressedSparseMatrix<false, double, int, std::vector<int>, std::vector<int>, std::vector<long long unsigned int> >::raw_store; bool ROW = false; T = double; IDX = int; U = std::vector<int>; V = std::vector<int>; W = std::vector<long long unsigned int>; std::size_t = long long unsigned int]':
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:362:28: required from 'tatami::SparseRange<T, IDX> tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::secondary_dimension_raw(IDX, std::size_t, std::size_t, tatami::Workspace*, T*, IDX*) const [with bool ROW = false; T = double; IDX = int; U = std::vector<int>; V = std::vector<int>; W = std::vector<long long unsigned int>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:106:20: required from 'tatami::SparseRange<T, IDX> tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::sparse_row(std::size_t, T*, IDX*, std::size_t, std::size_t, tatami::Workspace*, bool) const [with bool ROW = false; T = double; IDX = int; U = std::vector<int>; V = std::vector<int>; W = std::vector<long long unsigned int>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:101:25: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:312:23: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
312 | if (i == prev_i + 1) {
| ~~^~~~~~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:317:34: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
317 | } else if (i + 1 == prev_i) {
| ~~~~~~^~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:322:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
322 | } else if (i > prev_i) {
| ~~^~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:327:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
327 | } else if (i < prev_i) {
| ~~^~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp: In instantiation of 'void tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::secondary_dimension(IDX, std::size_t, std::size_t, tatami::Workspace*, STORE&) const [with STORE = tatami::CompressedSparseMatrix<false, double, int, std::vector<double>, std::vector<int>, std::vector<long long unsigned int> >::expanded_store; bool ROW = false; T = double; IDX = int; U = std::vector<double>; V = std::vector<int>; W = std::vector<long long unsigned int>; std::size_t = long long unsigned int]':
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:380:28: required from 'void tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::secondary_dimension_expanded(IDX, std::size_t, std::size_t, tatami::Workspace*, T*, T) const [with bool ROW = false; T = double; IDX = int; U = std::vector<double>; V = std::vector<int>; W = std::vector<long long unsigned int>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:79:13: required from 'const T* tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::row(std::size_t, T*, std::size_t, std::size_t, tatami::Workspace*) const [with bool ROW = false; T = double; IDX = int; U = std::vector<double>; V = std::vector<int>; W = std::vector<long long unsigned int>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:75:14: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:312:23: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
312 | if (i == prev_i + 1) {
| ~~^~~~~~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:317:34: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
317 | } else if (i + 1 == prev_i) {
| ~~~~~~^~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:322:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
322 | } else if (i > prev_i) {
| ~~^~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:327:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
327 | } else if (i < prev_i) {
| ~~^~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp: In instantiation of 'std::pair<long long unsigned int, long long unsigned int> tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::primary_dimension(std::size_t, std::size_t, std::size_t, std::size_t) const [with bool ROW = false; T = double; IDX = int; U = std::vector<double>; V = std::vector<int>; W = std::vector<long long unsigned int>; std::size_t = long long unsigned int]':
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:226:25: required from 'void tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::primary_dimension_expanded(std::size_t, std::size_t, std::size_t, std::size_t, T*, T) const [with bool ROW = false; T = double; IDX = int; U = std::vector<double>; V = std::vector<int>; W = std::vector<long long unsigned int>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:88:13: required from 'const T* tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::column(std::size_t, T*, std::size_t, std::size_t, tatami::Workspace*) const [with bool ROW = false; T = double; IDX = int; U = std::vector<double>; V = std::vector<int>; W = std::vector<long long unsigned int>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:84:14: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:188:14: warning: variable 'xIt' set but not used [-Wunused-but-set-variable]
188 | auto xIt = values.begin() + pstart;
| ^~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp: In instantiation of 'void tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::secondary_dimension(IDX, std::size_t, std::size_t, tatami::Workspace*, STORE&) const [with STORE = tatami::CompressedSparseMatrix<false, double, int, std::vector<double>, std::vector<int>, std::vector<long long unsigned int> >::raw_store; bool ROW = false; T = double; IDX = int; U = std::vector<double>; V = std::vector<int>; W = std::vector<long long unsigned int>; std::size_t = long long unsigned int]':
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:362:28: required from 'tatami::SparseRange<T, IDX> tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::secondary_dimension_raw(IDX, std::size_t, std::size_t, tatami::Workspace*, T*, IDX*) const [with bool ROW = false; T = double; IDX = int; U = std::vector<double>; V = std::vector<int>; W = std::vector<long long unsigned int>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:106:20: required from 'tatami::SparseRange<T, IDX> tatami::CompressedSparseMatrix<ROW, T, IDX, U, V, W>::sparse_row(std::size_t, T*, IDX*, std::size_t, std::size_t, tatami::Workspace*, bool) const [with bool ROW = false; T = double; IDX = int; U = std::vector<double>; V = std::vector<int>; W = std::vector<long long unsigned int>; std::size_t = long long unsigned int]'
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:101:25: required from here
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:312:23: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
312 | if (i == prev_i + 1) {
| ~~^~~~~~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:317:34: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
317 | } else if (i + 1 == prev_i) {
| ~~~~~~^~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:322:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
322 | } else if (i > prev_i) {
| ~~^~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:327:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
327 | } else if (i < prev_i) {
| ~~^~~~~~~~
g++ -shared -s -static-libgcc -o SingleR.dll tmp.def RcppExports.o find_classic_markers.o integrate_build.o integrate_run.o prebuild.o run.o -Lc:/rtools42/x86_64-w64-mingw32.static.posix/lib/x64 -Lc:/rtools42/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.17-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.17-bioc/R/library/00LOCK-SingleR/00new/SingleR/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (SingleR)