Back to Build/check report for BioC 3.17 |
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This page was generated on 2023-01-02 09:00:46 -0500 (Mon, 02 Jan 2023).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
palomino5 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2022-12-25 r83502 ucrt) -- "Unsuffered Consequences" | 4165 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the Rcpi package: Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1598/2158 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
Rcpi 1.35.0 (landing page) Nan Xiao
| palomino5 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | ||||||||
Package: Rcpi |
Version: 1.35.0 |
Command: F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:Rcpi.install-out.txt --library=F:\biocbuild\bbs-3.17-bioc\R\library --no-vignettes --timings Rcpi_1.35.0.tar.gz |
StartedAt: 2022-12-29 02:39:54 -0500 (Thu, 29 Dec 2022) |
EndedAt: 2022-12-29 02:41:56 -0500 (Thu, 29 Dec 2022) |
EllapsedTime: 122.6 seconds |
RetCode: 0 |
Status: OK |
CheckDir: Rcpi.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:Rcpi.install-out.txt --library=F:\biocbuild\bbs-3.17-bioc\R\library --no-vignettes --timings Rcpi_1.35.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'F:/biocbuild/bbs-3.17-bioc-rtools43/meat/Rcpi.Rcheck' * using R Under development (unstable) (2022-12-25 r83502 ucrt) * using platform: x86_64-w64-mingw32 (64-bit) * R was compiled by gcc.exe (GCC) 10.4.0 GNU Fortran (GCC) 10.4.0 * running under: Windows Server x64 (build 20348) * using session charset: UTF-8 * using option '--no-vignettes' * checking for file 'Rcpi/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'Rcpi' version '1.35.0' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... NOTE Found the following hidden files and directories: .travis.yml These were most likely included in error. See section 'Package structure' in the 'Writing R Extensions' manual. * checking for portable file names ... OK * checking whether package 'Rcpi' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in 'vignettes' ... OK * checking examples ... OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... Running 'runTests.R' OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See 'F:/biocbuild/bbs-3.17-bioc-rtools43/meat/Rcpi.Rcheck/00check.log' for details.
Rcpi.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL Rcpi ### ############################################################################## ############################################################################## * installing to library 'F:/biocbuild/bbs-3.17-bioc/R/library' * installing *source* package 'Rcpi' ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Rcpi)
Rcpi.Rcheck/tests/runTests.Rout
R Under development (unstable) (2022-12-25 r83502 ucrt) -- "Unsuffered Consequences" Copyright (C) 2022 The R Foundation for Statistical Computing Platform: x86_64-w64-mingw32/x64 (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > BiocGenerics:::testPackage('Rcpi') RUNIT TEST PROTOCOL -- Thu Dec 29 02:41:39 2022 *********************************************** Number of test functions: 11 Number of errors: 0 Number of failures: 0 1 Test Suite : Rcpi RUnit Tests - 11 test functions, 0 errors, 0 failures Number of test functions: 11 Number of errors: 0 Number of failures: 0 > > proc.time() user system elapsed 4.93 0.65 4.76
Rcpi.Rcheck/Rcpi-Ex.timings
name | user | system | elapsed | |
AA2DACOR | 0 | 0 | 0 | |
AA3DMoRSE | 0 | 0 | 0 | |
AAACF | 0 | 0 | 0 | |
AABLOSUM100 | 0 | 0 | 0 | |
AABLOSUM45 | 0 | 0 | 0 | |
AABLOSUM50 | 0 | 0 | 0 | |
AABLOSUM62 | 0.00 | 0.02 | 0.02 | |
AABLOSUM80 | 0 | 0 | 0 | |
AABurden | 0 | 0 | 0 | |
AACPSA | 0.00 | 0.01 | 0.02 | |
AAConn | 0 | 0 | 0 | |
AAConst | 0 | 0 | 0 | |
AADescAll | 0.00 | 0.02 | 0.01 | |
AAEdgeAdj | 0 | 0 | 0 | |
AAEigIdx | 0 | 0 | 0 | |
AAFGC | 0.02 | 0.00 | 0.02 | |
AAGETAWAY | 0 | 0 | 0 | |
AAGeom | 0 | 0 | 0 | |
AAInfo | 0 | 0 | 0 | |
AAMOE2D | 0 | 0 | 0 | |
AAMOE3D | 0.01 | 0.00 | 0.02 | |
AAMetaInfo | 0 | 0 | 0 | |
AAMolProp | 0 | 0 | 0 | |
AAPAM120 | 0.00 | 0.02 | 0.01 | |
AAPAM250 | 0 | 0 | 0 | |
AAPAM30 | 0 | 0 | 0 | |
AAPAM40 | 0.00 | 0.02 | 0.02 | |
AAPAM70 | 0 | 0 | 0 | |
AARDF | 0 | 0 | 0 | |
AARandic | 0.02 | 0.00 | 0.02 | |
AATopo | 0 | 0 | 0 | |
AATopoChg | 0 | 0 | 0 | |
AAWHIM | 0 | 0 | 0 | |
AAWalk | 0 | 0 | 0 | |
AAindex | 0.01 | 0.00 | 0.02 | |
OptAA3d | 0 | 0 | 0 | |
acc | 0.02 | 0.00 | 0.01 | |
calcDrugFPSim | 1.92 | 0.64 | 1.14 | |
calcDrugMCSSim | 0 | 0 | 0 | |
calcParProtGOSim | 0 | 0 | 0 | |
calcParProtSeqSim | 0.03 | 0.00 | 0.02 | |
calcTwoProtGOSim | 0 | 0 | 0 | |
calcTwoProtSeqSim | 0 | 0 | 0 | |
checkProt | 0 | 0 | 0 | |
convMolFormat | 0 | 0 | 0 | |
extractDrugAIO | 0 | 0 | 0 | |
extractDrugALOGP | 0 | 0 | 0 | |
extractDrugAminoAcidCount | 0 | 0 | 0 | |
extractDrugApol | 0 | 0 | 0 | |
extractDrugAromaticAtomsCount | 0 | 0 | 0 | |
extractDrugAromaticBondsCount | 0 | 0 | 0 | |
extractDrugAtomCount | 0 | 0 | 0 | |
extractDrugAutocorrelationCharge | 0 | 0 | 0 | |
extractDrugAutocorrelationMass | 0 | 0 | 0 | |
extractDrugAutocorrelationPolarizability | 0 | 0 | 0 | |
extractDrugBCUT | 0 | 0 | 0 | |
extractDrugBPol | 0 | 0 | 0 | |
extractDrugBondCount | 0.05 | 0.00 | 0.02 | |
extractDrugCPSA | 0 | 0 | 0 | |
extractDrugCarbonTypes | 0 | 0 | 0 | |
extractDrugChiChain | 0 | 0 | 0 | |
extractDrugChiCluster | 0 | 0 | 0 | |
extractDrugChiPath | 0 | 0 | 0 | |
extractDrugChiPathCluster | 0 | 0 | 0 | |
extractDrugDescOB | 0.02 | 0.00 | 0.01 | |
extractDrugECI | 0 | 0 | 0 | |
extractDrugEstate | 0 | 0 | 0 | |
extractDrugEstateComplete | 0 | 0 | 0 | |
extractDrugExtended | 0 | 0 | 0 | |
extractDrugExtendedComplete | 0 | 0 | 0 | |
extractDrugFMF | 0 | 0 | 0 | |
extractDrugFragmentComplexity | 0 | 0 | 0 | |
extractDrugGraph | 0 | 0 | 0 | |
extractDrugGraphComplete | 0 | 0 | 0 | |
extractDrugGravitationalIndex | 0 | 0 | 0 | |
extractDrugHBondAcceptorCount | 0 | 0 | 0 | |
extractDrugHBondDonorCount | 0 | 0 | 0 | |
extractDrugHybridization | 0 | 0 | 0 | |
extractDrugHybridizationComplete | 0 | 0 | 0 | |
extractDrugHybridizationRatio | 0 | 0 | 0 | |
extractDrugIPMolecularLearning | 0 | 0 | 0 | |
extractDrugKR | 0 | 0 | 0 | |
extractDrugKRComplete | 0 | 0 | 0 | |
extractDrugKappaShapeIndices | 0 | 0 | 0 | |
extractDrugKierHallSmarts | 0 | 0 | 0 | |
extractDrugLargestChain | 0 | 0 | 0 | |
extractDrugLargestPiSystem | 0 | 0 | 0 | |
extractDrugLengthOverBreadth | 0 | 0 | 0 | |
extractDrugLongestAliphaticChain | 0 | 0 | 0 | |
extractDrugMACCS | 0 | 0 | 0 | |
extractDrugMACCSComplete | 0 | 0 | 0 | |
extractDrugMDE | 0 | 0 | 0 | |
extractDrugMannholdLogP | 0 | 0 | 0 | |
extractDrugMomentOfInertia | 0 | 0 | 0 | |
extractDrugOBFP2 | 0 | 0 | 0 | |
extractDrugOBFP3 | 0.01 | 0.00 | 0.01 | |
extractDrugOBFP4 | 0 | 0 | 0 | |
extractDrugOBMACCS | 0.02 | 0.00 | 0.02 | |
extractDrugPetitjeanNumber | 0 | 0 | 0 | |
extractDrugPetitjeanShapeIndex | 0 | 0 | 0 | |
extractDrugPubChem | 0 | 0 | 0 | |
extractDrugPubChemComplete | 0 | 0 | 0 | |
extractDrugRotatableBondsCount | 0 | 0 | 0 | |
extractDrugRuleOfFive | 0 | 0 | 0 | |
extractDrugShortestPath | 0 | 0 | 0 | |
extractDrugShortestPathComplete | 0 | 0 | 0 | |
extractDrugStandard | 0 | 0 | 0 | |
extractDrugStandardComplete | 0 | 0 | 0 | |
extractDrugTPSA | 0 | 0 | 0 | |
extractDrugVABC | 0 | 0 | 0 | |
extractDrugVAdjMa | 0 | 0 | 0 | |
extractDrugWHIM | 0 | 0 | 0 | |
extractDrugWeight | 0 | 0 | 0 | |
extractDrugWeightedPath | 0 | 0 | 0 | |
extractDrugWienerNumbers | 0 | 0 | 0 | |
extractDrugXLogP | 0.01 | 0.00 | 0.02 | |
extractDrugZagrebIndex | 0 | 0 | 0 | |
extractPCMBLOSUM | 0 | 0 | 0 | |
extractPCMDescScales | 0.02 | 0.00 | 0.02 | |
extractPCMFAScales | 0.02 | 0.00 | 0.01 | |
extractPCMMDSScales | 0.00 | 0.02 | 0.02 | |
extractPCMPropScales | 0.01 | 0.00 | 0.01 | |
extractPCMScales | 0.02 | 0.00 | 0.02 | |
extractProtAAC | 0 | 0 | 0 | |
extractProtAPAAC | 0.54 | 0.01 | 0.56 | |
extractProtCTDC | 0 | 0 | 0 | |
extractProtCTDD | 0.02 | 0.00 | 0.02 | |
extractProtCTDT | 0 | 0 | 0 | |
extractProtCTriad | 0.06 | 0.02 | 0.07 | |
extractProtDC | 0 | 0 | 0 | |
extractProtGeary | 0.1 | 0.0 | 0.1 | |
extractProtMoran | 0.37 | 0.01 | 0.39 | |
extractProtMoreauBroto | 0.08 | 0.00 | 0.08 | |
extractProtPAAC | 0.37 | 0.03 | 0.40 | |
extractProtPSSM | 0 | 0 | 0 | |
extractProtPSSMAcc | 0 | 0 | 0 | |
extractProtPSSMFeature | 0 | 0 | 0 | |
extractProtQSO | 0.48 | 0.00 | 0.48 | |
extractProtSOCN | 0.46 | 0.00 | 0.46 | |
extractProtTC | 0.06 | 0.04 | 0.09 | |
getCPI | 0 | 0 | 0 | |
getDrug | 0 | 0 | 0 | |
getFASTAFromKEGG | 0 | 0 | 0 | |
getFASTAFromUniProt | 0 | 0 | 0 | |
getMolFromCAS | 0 | 0 | 0 | |
getMolFromChEMBL | 0 | 0 | 0 | |
getMolFromDrugBank | 0 | 0 | 0 | |
getMolFromKEGG | 0 | 0 | 0 | |
getMolFromPubChem | 0 | 0 | 0 | |
getPDBFromRCSBPDB | 0 | 0 | 0 | |
getPPI | 0 | 0 | 0 | |
getProt | 0 | 0 | 0 | |
getSeqFromKEGG | 0 | 0 | 0 | |
getSeqFromRCSBPDB | 0 | 0 | 0 | |
getSeqFromUniProt | 0 | 0 | 0 | |
getSmiFromChEMBL | 0 | 0 | 0 | |
getSmiFromDrugBank | 0 | 0 | 0 | |
getSmiFromKEGG | 0 | 0 | 0 | |
getSmiFromPubChem | 0 | 0 | 0 | |
readFASTA | 0 | 0 | 0 | |
readMolFromSDF | 0 | 0 | 0 | |
readMolFromSmi | 0 | 0 | 0 | |
readPDB | 0.91 | 0.00 | 0.92 | |
searchDrug | 0 | 0 | 0 | |
segProt | 0 | 0 | 0 | |