Back to Build/check report for BioC 3.17 |
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This page was generated on 2023-01-02 09:00:45 -0500 (Mon, 02 Jan 2023).
Hostname | OS | Arch (*) | R version | Installed pkgs |
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palomino5 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2022-12-25 r83502 ucrt) -- "Unsuffered Consequences" | 4165 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the Rbec package: Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1583/2158 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
Rbec 1.7.0 (landing page) Pengfan Zhang
| palomino5 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | ||||||||
Package: Rbec |
Version: 1.7.0 |
Command: F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL Rbec |
StartedAt: 2022-12-28 16:00:36 -0500 (Wed, 28 Dec 2022) |
EndedAt: 2022-12-28 16:01:21 -0500 (Wed, 28 Dec 2022) |
EllapsedTime: 45.5 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL Rbec ### ############################################################################## ############################################################################## * installing to library 'F:/biocbuild/bbs-3.17-bioc/R/library' * installing *source* package 'Rbec' ... ** using staged installation ** libs using C++ compiler: 'G__~1.EXE (GCC) 12.2.0' g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o In file included from ../inst/include/Rbec.h:7, from RcppExports.cpp:4: ../inst/include/Rbec_RcppExports.h:14:14: warning: 'void Rbec::{anonymous}::validateSignature(const char*)' defined but not used [-Wunused-function] 14 | void validateSignature(const char* sig) { | ^~~~~~~~~~~~~~~~~ g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c kmer_dist.cpp -o kmer_dist.o kmer_dist.cpp: In function 'Rcpp::NumericVector kmer_dist(std::vector<std::__cxx11::basic_string<char> >, std::vector<std::__cxx11::basic_string<char> >, int)': kmer_dist.cpp:33:16: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long long unsigned int'} [-Wsign-compare] 33 | for(int i=0;i<nseqs;i++) { | ~^~~~~~ g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c rcpp_test.cpp -o rcpp_test.o rcpp_test.cpp: In function 'void assign_kmer(uint16_t*, const char*, int)': rcpp_test.cpp:71:8: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long long unsigned int'} [-Wsign-compare] 71 | if(k >= len || k < 3 || k > 8) { Rcpp::stop("Invalid kmer-size."); } | ~~^~~~~~ rcpp_test.cpp:81:13: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long long unsigned int'} [-Wsign-compare] 81 | for(i=0; i<klen; i++) { | ~^~~~~ g++ -std=gnu++11 -shared -s -static-libgcc -o Rbec.dll tmp.def RcppExports.o kmer_dist.o rcpp_test.o -Lc:/rtools42/x86_64-w64-mingw32.static.posix/lib/x64 -Lc:/rtools42/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.17-bioc/R/bin/x64 -lR installing to F:/biocbuild/bbs-3.17-bioc/R/library/00LOCK-Rbec/00new/Rbec/libs/x64 ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Rbec)