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This page was generated on 2023-01-02 09:00:47 -0500 (Mon, 02 Jan 2023).

HostnameOSArch (*)R versionInstalled pkgs
palomino5Windows Server 2022 Datacenterx64R Under development (unstable) (2022-12-25 r83502 ucrt) -- "Unsuffered Consequences" 4165
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INSTALL results for RNAdecay on palomino5


To the developers/maintainers of the RNAdecay package:
Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1682/2158HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
RNAdecay 1.19.0  (landing page)
Reed Sorenson
Snapshot Date: 2022-12-28 11:00:06 -0500 (Wed, 28 Dec 2022)
git_url: https://git.bioconductor.org/packages/RNAdecay
git_branch: master
git_last_commit: d17fd6f
git_last_commit_date: 2022-11-01 11:17:45 -0500 (Tue, 01 Nov 2022)
palomino5Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  

Summary

Package: RNAdecay
Version: 1.19.0
Command: F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL RNAdecay
StartedAt: 2022-12-28 16:03:40 -0500 (Wed, 28 Dec 2022)
EndedAt: 2022-12-28 16:07:32 -0500 (Wed, 28 Dec 2022)
EllapsedTime: 232.2 seconds
RetCode: 0
Status:   OK  

Command output

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### Running command:
###
###   F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL RNAdecay
###
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* installing to library 'F:/biocbuild/bbs-3.17-bioc/R/library'
* installing *source* package 'RNAdecay' ...
** using staged installation
** libs
  running 'src/Makefile.win' ...
F:/biocbuild/bbs-3.17-bioc/R/bin/Rscript --vanilla -e "TMB::compile('general_dExp_1sse.cpp',safebounds=FALSE,safeunload=FALSE)"
using C++ compiler: 'G__~1.EXE (GCC) 12.2.0'
g++ -std=gnu++11  -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I"F:/biocbuild/bbs-3.17-bioc/R/library/TMB/include" -I"F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include"   -DTMB_EIGEN_DISABLE_WARNINGS   -DTMB_LIB_INIT=R_init_general_dExp_1sse  -DCPPAD_FRAMEWORK    -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c general_dExp_1sse.cpp -o general_dExp_1sse.o
g++ -std=gnu++11 -shared -s -static-libgcc -o general_dExp_1sse.dll tmp.def general_dExp_1sse.o -Lc:/rtools42/x86_64-w64-mingw32.static.posix/lib/x64 -Lc:/rtools42/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.17-bioc/R/bin/x64 -lR
[1] 0
F:/biocbuild/bbs-3.17-bioc/R/bin/Rscript --vanilla -e "TMB::compile('general_Exp_1sse.cpp',safebounds=FALSE,safeunload=FALSE)"
using C++ compiler: 'G__~1.EXE (GCC) 12.2.0'
g++ -std=gnu++11  -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I"F:/biocbuild/bbs-3.17-bioc/R/library/TMB/include" -I"F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include"   -DTMB_EIGEN_DISABLE_WARNINGS   -DTMB_LIB_INIT=R_init_general_Exp_1sse  -DCPPAD_FRAMEWORK    -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c general_Exp_1sse.cpp -o general_Exp_1sse.o
g++ -std=gnu++11 -shared -s -static-libgcc -o general_Exp_1sse.dll tmp.def general_Exp_1sse.o -Lc:/rtools42/x86_64-w64-mingw32.static.posix/lib/x64 -Lc:/rtools42/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.17-bioc/R/bin/x64 -lR
[1] 0
F:/biocbuild/bbs-3.17-bioc/R/bin/Rscript --vanilla -e "TMB::compile('general_dExp_2sse.cpp',safebounds=FALSE,safeunload=FALSE)"
using C++ compiler: 'G__~1.EXE (GCC) 12.2.0'
g++ -std=gnu++11  -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I"F:/biocbuild/bbs-3.17-bioc/R/library/TMB/include" -I"F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include"   -DTMB_EIGEN_DISABLE_WARNINGS   -DTMB_LIB_INIT=R_init_general_dExp_2sse  -DCPPAD_FRAMEWORK    -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c general_dExp_2sse.cpp -o general_dExp_2sse.o
g++ -std=gnu++11 -shared -s -static-libgcc -o general_dExp_2sse.dll tmp.def general_dExp_2sse.o -Lc:/rtools42/x86_64-w64-mingw32.static.posix/lib/x64 -Lc:/rtools42/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.17-bioc/R/bin/x64 -lR
[1] 0
F:/biocbuild/bbs-3.17-bioc/R/bin/Rscript --vanilla -e "TMB::compile('general_Exp_2sse.cpp',safebounds=FALSE,safeunload=FALSE)"
using C++ compiler: 'G__~1.EXE (GCC) 12.2.0'
g++ -std=gnu++11  -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I"F:/biocbuild/bbs-3.17-bioc/R/library/TMB/include" -I"F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include"   -DTMB_EIGEN_DISABLE_WARNINGS   -DTMB_LIB_INIT=R_init_general_Exp_2sse  -DCPPAD_FRAMEWORK    -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c general_Exp_2sse.cpp -o general_Exp_2sse.o
g++ -std=gnu++11 -shared -s -static-libgcc -o general_Exp_2sse.dll tmp.def general_Exp_2sse.o -Lc:/rtools42/x86_64-w64-mingw32.static.posix/lib/x64 -Lc:/rtools42/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.17-bioc/R/bin/x64 -lR
[1] 0
F:/biocbuild/bbs-3.17-bioc/R/bin/Rscript --vanilla -e "TMB::compile('general_dExp_3sse.cpp',safebounds=FALSE,safeunload=FALSE)"
using C++ compiler: 'G__~1.EXE (GCC) 12.2.0'
g++ -std=gnu++11  -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I"F:/biocbuild/bbs-3.17-bioc/R/library/TMB/include" -I"F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include"   -DTMB_EIGEN_DISABLE_WARNINGS   -DTMB_LIB_INIT=R_init_general_dExp_3sse  -DCPPAD_FRAMEWORK    -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c general_dExp_3sse.cpp -o general_dExp_3sse.o
g++ -std=gnu++11 -shared -s -static-libgcc -o general_dExp_3sse.dll tmp.def general_dExp_3sse.o -Lc:/rtools42/x86_64-w64-mingw32.static.posix/lib/x64 -Lc:/rtools42/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.17-bioc/R/bin/x64 -lR
[1] 0
F:/biocbuild/bbs-3.17-bioc/R/bin/Rscript --vanilla -e "TMB::compile('general_Exp_3sse.cpp',safebounds=FALSE,safeunload=FALSE)"
using C++ compiler: 'G__~1.EXE (GCC) 12.2.0'
g++ -std=gnu++11  -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I"F:/biocbuild/bbs-3.17-bioc/R/library/TMB/include" -I"F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include"   -DTMB_EIGEN_DISABLE_WARNINGS   -DTMB_LIB_INIT=R_init_general_Exp_3sse  -DCPPAD_FRAMEWORK    -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c general_Exp_3sse.cpp -o general_Exp_3sse.o
g++ -std=gnu++11 -shared -s -static-libgcc -o general_Exp_3sse.dll tmp.def general_Exp_3sse.o -Lc:/rtools42/x86_64-w64-mingw32.static.posix/lib/x64 -Lc:/rtools42/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.17-bioc/R/bin/x64 -lR
[1] 0
F:/biocbuild/bbs-3.17-bioc/R/bin/Rscript --vanilla -e "TMB::compile('general_dExp_4sse.cpp',safebounds=FALSE,safeunload=FALSE)"
using C++ compiler: 'G__~1.EXE (GCC) 12.2.0'
g++ -std=gnu++11  -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I"F:/biocbuild/bbs-3.17-bioc/R/library/TMB/include" -I"F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include"   -DTMB_EIGEN_DISABLE_WARNINGS   -DTMB_LIB_INIT=R_init_general_dExp_4sse  -DCPPAD_FRAMEWORK    -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c general_dExp_4sse.cpp -o general_dExp_4sse.o
g++ -std=gnu++11 -shared -s -static-libgcc -o general_dExp_4sse.dll tmp.def general_dExp_4sse.o -Lc:/rtools42/x86_64-w64-mingw32.static.posix/lib/x64 -Lc:/rtools42/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.17-bioc/R/bin/x64 -lR
[1] 0
F:/biocbuild/bbs-3.17-bioc/R/bin/Rscript --vanilla -e "TMB::compile('general_Exp_4sse.cpp',safebounds=FALSE,safeunload=FALSE)"
using C++ compiler: 'G__~1.EXE (GCC) 12.2.0'
g++ -std=gnu++11  -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I"F:/biocbuild/bbs-3.17-bioc/R/library/TMB/include" -I"F:/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include"   -DTMB_EIGEN_DISABLE_WARNINGS   -DTMB_LIB_INIT=R_init_general_Exp_4sse  -DCPPAD_FRAMEWORK    -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c general_Exp_4sse.cpp -o general_Exp_4sse.o
g++ -std=gnu++11 -shared -s -static-libgcc -o general_Exp_4sse.dll tmp.def general_Exp_4sse.o -Lc:/rtools42/x86_64-w64-mingw32.static.posix/lib/x64 -Lc:/rtools42/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.17-bioc/R/bin/x64 -lR
[1] 0
installing to F:/biocbuild/bbs-3.17-bioc/R/library/00LOCK-RNAdecay/00new/RNAdecay/libs/x64
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (RNAdecay)