Back to Build/check report for BioC 3.17
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This page was generated on 2023-01-02 09:00:45 -0500 (Mon, 02 Jan 2023).

HostnameOSArch (*)R versionInstalled pkgs
palomino5Windows Server 2022 Datacenterx64R Under development (unstable) (2022-12-25 r83502 ucrt) -- "Unsuffered Consequences" 4165
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CHECK results for QSutils on palomino5


To the developers/maintainers of the QSutils package:
Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1554/2158HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
QSutils 1.17.0  (landing page)
Mercedes Guerrero-Murillo
Snapshot Date: 2022-12-28 11:00:06 -0500 (Wed, 28 Dec 2022)
git_url: https://git.bioconductor.org/packages/QSutils
git_branch: master
git_last_commit: c951f69
git_last_commit_date: 2022-11-01 11:18:42 -0500 (Tue, 01 Nov 2022)
palomino5Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  

Summary

Package: QSutils
Version: 1.17.0
Command: F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:QSutils.install-out.txt --library=F:\biocbuild\bbs-3.17-bioc\R\library --no-vignettes --timings QSutils_1.17.0.tar.gz
StartedAt: 2022-12-29 02:33:12 -0500 (Thu, 29 Dec 2022)
EndedAt: 2022-12-29 02:34:24 -0500 (Thu, 29 Dec 2022)
EllapsedTime: 71.8 seconds
RetCode: 0
Status:   OK  
CheckDir: QSutils.Rcheck
Warnings: 0

Command output

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###
### Running command:
###
###   F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:QSutils.install-out.txt --library=F:\biocbuild\bbs-3.17-bioc\R\library --no-vignettes --timings QSutils_1.17.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'F:/biocbuild/bbs-3.17-bioc-rtools43/meat/QSutils.Rcheck'
* using R Under development (unstable) (2022-12-25 r83502 ucrt)
* using platform: x86_64-w64-mingw32 (64-bit)
* R was compiled by
    gcc.exe (GCC) 10.4.0
    GNU Fortran (GCC) 10.4.0
* running under: Windows Server x64 (build 20348)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'QSutils/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'QSutils' version '1.17.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'QSutils' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

QSutils.Rcheck/00install.out

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###
### Running command:
###
###   F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL QSutils
###
##############################################################################
##############################################################################


* installing to library 'F:/biocbuild/bbs-3.17-bioc/R/library'
* installing *source* package 'QSutils' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (QSutils)

Tests output


Example timings

QSutils.Rcheck/QSutils-Ex.timings

nameusersystemelapsed
Collapse0.080.020.09
ConsSeq0.030.000.03
CorrectGapsAndNs0.020.000.02
DBrule0.030.000.03
DNA.dist0.020.000.02
DSFT000
Diverge000
DottedAlignment000
FAD0.020.000.02
FreqMat0.000.010.01
GenerateVars000
GenotypeStandards_A-H.fas000
GetInfProfile0.000.020.02
GetQSData0.500.050.55
GetRandomSeq000
GiniSimpson000
HCq000
Hill000
IntersectStrandHpls0.080.000.07
MutationFreq0.500.050.55
MutsTbl0.010.000.02
NucleotideDiversity000
PolyDist0.020.010.03
Rao0.010.000.02
ReadAmplSeqs0.020.000.01
Renyi0.010.000.02
ReportVariants000
SegSites0.020.000.02
Shannon000
SortByMutations0.220.030.25
SummaryMuts0.010.000.01
TotalMutations0.020.000.02
Toy.GapsAndNs.fna0.030.000.03
ToyData_10_50_1000.fna0.030.000.03
ToyData_FWReads.fna0.050.000.05
ToyData_RVReads.fna0.030.040.06
UniqueMutations0.020.000.01
Unknown-Genotype.fna000
fn.ab0.010.000.02
geom.series000