| Back to Build/check report for BioC 3.17 |
|
This page was generated on 2023-01-02 09:00:42 -0500 (Mon, 02 Jan 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| palomino5 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2022-12-25 r83502 ucrt) -- "Unsuffered Consequences" | 4165 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the OmnipathR package: Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1378/2158 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| OmnipathR 3.7.0 (landing page) Denes Turei
| palomino5 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | ||||||||
| Package: OmnipathR |
| Version: 3.7.0 |
| Command: F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:OmnipathR.install-out.txt --library=F:\biocbuild\bbs-3.17-bioc\R\library --no-vignettes --timings OmnipathR_3.7.0.tar.gz |
| StartedAt: 2022-12-29 01:59:00 -0500 (Thu, 29 Dec 2022) |
| EndedAt: 2022-12-29 02:18:38 -0500 (Thu, 29 Dec 2022) |
| EllapsedTime: 1178.4 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: OmnipathR.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:OmnipathR.install-out.txt --library=F:\biocbuild\bbs-3.17-bioc\R\library --no-vignettes --timings OmnipathR_3.7.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory 'F:/biocbuild/bbs-3.17-bioc-rtools43/meat/OmnipathR.Rcheck'
* using R Under development (unstable) (2022-12-25 r83502 ucrt)
* using platform: x86_64-w64-mingw32 (64-bit)
* R was compiled by
gcc.exe (GCC) 10.4.0
GNU Fortran (GCC) 10.4.0
* running under: Windows Server x64 (build 20348)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'OmnipathR/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'OmnipathR' version '3.7.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'OmnipathR' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
[2022-12-29 01:59:29] [INFO] [OmnipathR] Initialized cache: `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR`.
[2022-12-29 01:59:29] [TRACE] [OmnipathR] Running on a build server, wiping cache.
[2022-12-29 01:59:29] [TRACE] [OmnipathR] Cache is at `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR`.
[2022-12-29 01:59:29] [TRACE] [OmnipathR] Contains 1 files.
[2022-12-29 01:59:29] [TRACE] [OmnipathR] Cache is locked: FALSE.
[2022-12-29 01:59:29] [SUCCESS] [OmnipathR] Removing all cache contents from `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR`.
[2022-12-29 01:59:29] [TRACE] [OmnipathR] Pandoc version: `2.7.3`.
[2022-12-29 01:59:29] [TRACE] [OmnipathR] Cache locked: FALSE
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking R/sysdata.rda ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
nichenet_lr_network 136.80 0.79 138.58
nichenet_networks 57.09 0.52 58.30
nichenet_gr_network_evex 49.72 0.81 55.67
simplify_intercell_network 43.89 0.31 45.93
filter_intercell_network 42.18 0.87 45.48
unique_intercell_network 42.12 0.08 42.20
evex_download 37.14 0.57 48.62
nichenet_signaling_network 33.53 1.37 40.45
nichenet_lr_network_omnipath 33.02 0.78 37.98
curated_ligrec_stats 19.35 1.58 75.00
bioplex_all 17.26 0.28 18.19
annotation_categories 17.17 0.00 17.80
consensuspathdb_raw_table 12.03 0.48 12.86
pivot_annotations 9.59 0.59 11.97
nichenet_gr_network 8.09 0.33 9.14
filter_extra_attrs 7.37 0.08 8.00
extra_attr_values 7.22 0.05 7.85
preppi_download 6.19 0.89 7.19
nichenet_signaling_network_omnipath 6.86 0.14 7.00
nichenet_gr_network_omnipath 6.61 0.26 7.45
go_annot_download 6.12 0.55 5.54
preppi_filter 5.92 0.64 4.81
with_extra_attrs 6.34 0.12 7.09
filter_intercell 5.79 0.30 6.42
nichenet_signaling_network_evex 5.49 0.39 6.22
extra_attrs_to_cols 5.56 0.06 5.62
giant_component 5.33 0.19 6.15
ancestors 5.06 0.36 5.48
curated_ligand_receptor_interactions 4.17 0.47 11.86
import_intercell_network 4.06 0.35 6.04
homologene_uniprot_orthology 2.27 0.10 11.78
kegg_pathway_download 1.87 0.11 9.75
import_mirnatarget_interactions 1.25 0.16 7.91
all_uniprot_acs 1.06 0.14 13.46
uniprot_full_id_mapping_table 0.97 0.04 7.03
is_trembl 0.92 0.07 40.24
translate_ids 0.82 0.06 7.98
ensembl_id_mapping_table 0.56 0.05 60.22
all_uniprots 0.22 0.02 5.95
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
Running 'testthat.R'
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
'F:/biocbuild/bbs-3.17-bioc-rtools43/meat/OmnipathR.Rcheck/00check.log'
for details.
OmnipathR.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL OmnipathR ### ############################################################################## ############################################################################## * installing to library 'F:/biocbuild/bbs-3.17-bioc/R/library' * installing *source* package 'OmnipathR' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location [2022-12-28 16:03:05] [INFO] [OmnipathR] Initialized cache: `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR`. [2022-12-28 16:03:05] [TRACE] [OmnipathR] Running on a build server, wiping cache. [2022-12-28 16:03:05] [TRACE] [OmnipathR] Cache is at `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR`. [2022-12-28 16:03:05] [TRACE] [OmnipathR] Contains 1 files. [2022-12-28 16:03:05] [TRACE] [OmnipathR] Cache is locked: FALSE. [2022-12-28 16:03:05] [SUCCESS] [OmnipathR] Removing all cache contents from `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR`. [2022-12-28 16:03:06] [TRACE] [OmnipathR] Pandoc version: `2.7.3`. [2022-12-28 16:03:06] [TRACE] [OmnipathR] Cache locked: FALSE ** testing if installed package can be loaded from final location [2022-12-28 16:03:07] [INFO] [OmnipathR] Initialized cache: `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR`. [2022-12-28 16:03:07] [TRACE] [OmnipathR] Running on a build server, wiping cache. [2022-12-28 16:03:07] [TRACE] [OmnipathR] Cache is at `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR`. [2022-12-28 16:03:07] [TRACE] [OmnipathR] Contains 1 files. [2022-12-28 16:03:07] [TRACE] [OmnipathR] Cache is locked: FALSE. [2022-12-28 16:03:07] [SUCCESS] [OmnipathR] Removing all cache contents from `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR`. [2022-12-28 16:03:08] [TRACE] [OmnipathR] Pandoc version: `2.7.3`. [2022-12-28 16:03:08] [TRACE] [OmnipathR] Cache locked: FALSE ** testing if installed package keeps a record of temporary installation path * DONE (OmnipathR)
OmnipathR.Rcheck/tests/testthat.Rout
R Under development (unstable) (2022-12-25 r83502 ucrt) -- "Unsuffered Consequences"
Copyright (C) 2022 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> #!/usr/bin/env Rscript
>
> #
> # This file is part of the `OmnipathR` R package
> #
> # Copyright
> # 2018-2022
> # Saez Lab, Uniklinik RWTH Aachen, Heidelberg University
> #
> # File author(s): Alberto Valdeolivas
> # Dénes Türei (turei.denes@gmail.com)
> # Attila Gábor
> #
> # Distributed under the MIT (Expat) License.
> # See accompanying file `LICENSE` or find a copy at
> # https://directory.fsf.org/wiki/License:Expat
> #
> # Website: https://saezlab.github.io/omnipathr
> # Git repo: https://github.com/saezlab/OmnipathR
> #
>
>
> library(testthat)
> library(OmnipathR)
[2022-12-29 02:17:54] [INFO] [OmnipathR] Initialized cache: `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR`.
[2022-12-29 02:17:54] [TRACE] [OmnipathR] Running on a build server, wiping cache.
[2022-12-29 02:17:54] [TRACE] [OmnipathR] Cache is at `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR`.
[2022-12-29 02:17:54] [TRACE] [OmnipathR] Contains 27 files.
[2022-12-29 02:17:54] [TRACE] [OmnipathR] Cache is locked: FALSE.
[2022-12-29 02:17:54] [SUCCESS] [OmnipathR] Removing all cache contents from `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR`.
[2022-12-29 02:17:55] [TRACE] [OmnipathR] Pandoc version: `2.7.3`.
[2022-12-29 02:17:55] [TRACE] [OmnipathR] Cache locked: FALSE
>
> test_check('OmnipathR')
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 34 ]
>
> proc.time()
user system elapsed
8.60 1.23 29.01
OmnipathR.Rcheck/OmnipathR-Ex.timings
| name | user | system | elapsed | |
| OmnipathR | 0 | 0 | 0 | |
| all_uniprot_acs | 1.06 | 0.14 | 13.46 | |
| all_uniprots | 0.22 | 0.02 | 5.95 | |
| ancestors | 5.06 | 0.36 | 5.48 | |
| annotated_network | 0.35 | 0.11 | 2.61 | |
| annotation_categories | 17.17 | 0.00 | 17.80 | |
| biomart_query | 0.42 | 0.03 | 2.31 | |
| bioplex1 | 0.38 | 0.09 | 0.66 | |
| bioplex2 | 0.65 | 0.08 | 1.17 | |
| bioplex3 | 1.13 | 0.14 | 2.20 | |
| bioplex_all | 17.26 | 0.28 | 18.19 | |
| bioplex_hct116_1 | 0.19 | 0.00 | 0.19 | |
| bma_motif_es | 0.17 | 0.02 | 1.08 | |
| bma_motif_vs | 0.11 | 0.00 | 0.66 | |
| common_name | 0.01 | 0.00 | 0.02 | |
| consensuspathdb_download | 0 | 0 | 0 | |
| consensuspathdb_raw_table | 12.03 | 0.48 | 12.86 | |
| curated_ligand_receptor_interactions | 4.17 | 0.47 | 11.86 | |
| curated_ligrec_stats | 19.35 | 1.58 | 75.00 | |
| descendants | 0.50 | 0.06 | 0.56 | |
| ensembl_dataset | 0 | 0 | 0 | |
| ensembl_id_mapping_table | 0.56 | 0.05 | 60.22 | |
| ensembl_id_type | 0 | 0 | 0 | |
| ensembl_name | 0.05 | 0.00 | 0.05 | |
| ensembl_organisms | 0.20 | 0.01 | 0.22 | |
| ensembl_organisms_raw | 0.14 | 0.02 | 0.15 | |
| ensembl_orthology | 0 | 0 | 0 | |
| enzsub_graph | 1.33 | 0.08 | 2.63 | |
| evex_download | 37.14 | 0.57 | 48.62 | |
| extra_attr_values | 7.22 | 0.05 | 7.85 | |
| extra_attrs | 4.17 | 0.03 | 4.20 | |
| extra_attrs_to_cols | 5.56 | 0.06 | 5.62 | |
| filter_by_resource | 3.08 | 0.08 | 3.79 | |
| filter_extra_attrs | 7.37 | 0.08 | 8.00 | |
| filter_intercell | 5.79 | 0.30 | 6.42 | |
| filter_intercell_network | 42.18 | 0.87 | 45.48 | |
| find_all_paths | 3.02 | 0.02 | 3.03 | |
| get_annotation_resources | 0.01 | 0.01 | 0.58 | |
| get_complex_genes | 0.93 | 0.04 | 1.63 | |
| get_complex_resources | 0.03 | 0.01 | 0.76 | |
| get_db | 0.56 | 0.03 | 0.67 | |
| get_enzsub_resources | 0.01 | 0.00 | 0.48 | |
| get_interaction_resources | 0.05 | 0.00 | 0.50 | |
| get_intercell_categories | 0.29 | 0.03 | 0.64 | |
| get_intercell_generic_categories | 0.00 | 0.02 | 0.02 | |
| get_intercell_resources | 0.05 | 0.00 | 0.52 | |
| get_ontology_db | 0.28 | 0.00 | 0.28 | |
| get_resources | 0.03 | 0.00 | 0.50 | |
| get_signed_ptms | 2.88 | 0.01 | 3.43 | |
| giant_component | 5.33 | 0.19 | 6.15 | |
| go_annot_download | 6.12 | 0.55 | 5.54 | |
| go_annot_slim | 0 | 0 | 0 | |
| go_ontology_download | 0.13 | 0.00 | 0.14 | |
| guide2pharma_download | 1.22 | 0.12 | 2.39 | |
| harmonizome_download | 0.36 | 0.00 | 0.44 | |
| has_extra_attrs | 4.03 | 0.08 | 4.11 | |
| homologene_download | 2.11 | 0.08 | 2.06 | |
| homologene_raw | 0.76 | 0.03 | 0.80 | |
| homologene_uniprot_orthology | 2.27 | 0.10 | 11.78 | |
| homology_translate | 0 | 0 | 0 | |
| hpo_download | 2.00 | 0.17 | 2.28 | |
| htridb_download | 0.64 | 0.08 | 1.44 | |
| import_all_interactions | 1.36 | 0.01 | 2.92 | |
| import_dorothea_interactions | 1.67 | 0.06 | 3.10 | |
| import_intercell_network | 4.06 | 0.35 | 6.04 | |
| import_kinaseextra_interactions | 1.19 | 0.08 | 2.35 | |
| import_ligrecextra_interactions | 0.55 | 0.11 | 1.59 | |
| import_lncrna_mrna_interactions | 0.31 | 0.04 | 1.20 | |
| import_mirnatarget_interactions | 1.25 | 0.16 | 7.91 | |
| import_omnipath_annotations | 0.64 | 0.05 | 2.84 | |
| import_omnipath_complexes | 0.56 | 0.04 | 2.88 | |
| import_omnipath_enzsub | 1.49 | 0.00 | 2.23 | |
| import_omnipath_interactions | 0.36 | 0.00 | 1.13 | |
| import_omnipath_intercell | 0.51 | 0.05 | 1.01 | |
| import_pathwayextra_interactions | 0.77 | 0.08 | 3.27 | |
| import_post_translational_interactions | 0.73 | 0.09 | 2.12 | |
| import_small_molecule_protein_interactions | 0.53 | 0.03 | 0.85 | |
| import_tf_mirna_interactions | 0.61 | 0.07 | 1.68 | |
| import_tf_target_interactions | 1.42 | 0.10 | 2.51 | |
| import_transcriptional_interactions | 2.57 | 0.08 | 3.65 | |
| inbiomap_download | 0 | 0 | 0 | |
| inbiomap_raw | 0 | 0 | 0 | |
| interaction_graph | 0.41 | 0.00 | 0.95 | |
| intercell_categories | 0.05 | 0.00 | 0.05 | |
| intercell_consensus_filter | 1.18 | 0.13 | 1.89 | |
| is_ontology_id | 0 | 0 | 0 | |
| is_swissprot | 0.07 | 0.01 | 0.09 | |
| is_trembl | 0.92 | 0.07 | 40.24 | |
| is_uniprot | 0.39 | 0.00 | 0.53 | |
| kegg_info | 0.75 | 0.01 | 2.98 | |
| kegg_open | 0 | 0 | 0 | |
| kegg_pathway_annotations | 0 | 0 | 0 | |
| kegg_pathway_download | 1.87 | 0.11 | 9.75 | |
| kegg_pathway_list | 0.46 | 0.06 | 1.36 | |
| kegg_pathways_download | 0 | 0 | 0 | |
| kegg_picture | 0.09 | 0.00 | 1.60 | |
| kegg_process | 0.17 | 0.00 | 0.17 | |
| latin_name | 0.11 | 0.00 | 0.11 | |
| load_db | 0.22 | 0.02 | 0.23 | |
| ncbi_taxid | 0.03 | 0.00 | 0.03 | |
| nichenet_build_model | 0 | 0 | 0 | |
| nichenet_expression_data | 0 | 0 | 0 | |
| nichenet_gr_network | 8.09 | 0.33 | 9.14 | |
| nichenet_gr_network_evex | 49.72 | 0.81 | 55.67 | |
| nichenet_gr_network_harmonizome | 3.37 | 0.20 | 3.86 | |
| nichenet_gr_network_htridb | 0.05 | 0.00 | 0.06 | |
| nichenet_gr_network_omnipath | 6.61 | 0.26 | 7.45 | |
| nichenet_gr_network_pathwaycommons | 4.64 | 0.33 | 4.61 | |
| nichenet_gr_network_regnetwork | 1.86 | 0.04 | 1.95 | |
| nichenet_gr_network_remap | 0 | 0 | 0 | |
| nichenet_gr_network_trrust | 0.72 | 0.02 | 2.67 | |
| nichenet_ligand_activities | 0 | 0 | 0 | |
| nichenet_ligand_target_links | 0 | 0 | 0 | |
| nichenet_ligand_target_matrix | 0 | 0 | 0 | |
| nichenet_lr_network | 136.80 | 0.79 | 138.58 | |
| nichenet_lr_network_guide2pharma | 0.70 | 0.02 | 0.73 | |
| nichenet_lr_network_omnipath | 33.02 | 0.78 | 37.98 | |
| nichenet_lr_network_ramilowski | 0.09 | 0.02 | 0.11 | |
| nichenet_main | 0 | 0 | 0 | |
| nichenet_networks | 57.09 | 0.52 | 58.30 | |
| nichenet_optimization | 0 | 0 | 0 | |
| nichenet_remove_orphan_ligands | 0 | 0 | 0 | |
| nichenet_results_dir | 0 | 0 | 0 | |
| nichenet_signaling_network | 33.53 | 1.37 | 40.45 | |
| nichenet_signaling_network_cpdb | 0 | 0 | 0 | |
| nichenet_signaling_network_evex | 5.49 | 0.39 | 6.22 | |
| nichenet_signaling_network_harmonizome | 0.11 | 0.00 | 0.14 | |
| nichenet_signaling_network_inbiomap | 0 | 0 | 0 | |
| nichenet_signaling_network_omnipath | 6.86 | 0.14 | 7.00 | |
| nichenet_signaling_network_pathwaycommons | 1.39 | 0.02 | 1.41 | |
| nichenet_signaling_network_vinayagam | 0.61 | 0.03 | 0.70 | |
| nichenet_test | 0 | 0 | 0 | |
| nichenet_workarounds | 0 | 0 | 0 | |
| obo_parser | 0.22 | 0.00 | 0.26 | |
| omnipath_cache_autoclean | 0 | 0 | 0 | |
| omnipath_cache_clean | 0.03 | 0.00 | 0.04 | |
| omnipath_cache_clean_db | 0.11 | 0.00 | 0.10 | |
| omnipath_cache_download_ready | 0.53 | 0.06 | 0.66 | |
| omnipath_cache_filter_versions | 0.03 | 0.02 | 0.09 | |
| omnipath_cache_get | 0.01 | 0.03 | 0.05 | |
| omnipath_cache_key | 0 | 0 | 0 | |
| omnipath_cache_latest_or_new | 0.02 | 0.01 | 0.03 | |
| omnipath_cache_load | 0.38 | 0.00 | 1.22 | |
| omnipath_cache_move_in | 0.06 | 0.07 | 0.14 | |
| omnipath_cache_remove | 0.06 | 0.00 | 0.10 | |
| omnipath_cache_save | 0.08 | 0.01 | 0.14 | |
| omnipath_cache_search | 0 | 0 | 0 | |
| omnipath_cache_set_ext | 0.09 | 0.00 | 0.14 | |
| omnipath_cache_update_status | 0.05 | 0.00 | 0.04 | |
| omnipath_cache_wipe | 0 | 0 | 0 | |
| omnipath_get_config_path | 0 | 0 | 0 | |
| omnipath_load_config | 0 | 0 | 0 | |
| omnipath_log | 0 | 0 | 0 | |
| omnipath_logfile | 0 | 0 | 0 | |
| omnipath_msg | 0 | 0 | 0 | |
| omnipath_reset_config | 0 | 0 | 0 | |
| omnipath_save_config | 0 | 0 | 0 | |
| omnipath_set_cachedir | 0.01 | 0.00 | 0.02 | |
| omnipath_set_console_loglevel | 0 | 0 | 0 | |
| omnipath_set_logfile_loglevel | 0 | 0 | 0 | |
| omnipath_set_loglevel | 0 | 0 | 0 | |
| omnipath_show_db | 0.10 | 0.00 | 0.09 | |
| omnipath_unlock_cache_db | 0 | 0 | 0 | |
| ontology_ensure_id | 0 | 0 | 0 | |
| ontology_ensure_name | 0.02 | 0.00 | 0.02 | |
| ontology_name_id | 0.05 | 0.00 | 0.05 | |
| pathwaycommons_download | 4.09 | 0.30 | 4.12 | |
| pivot_annotations | 9.59 | 0.59 | 11.97 | |
| preppi_download | 6.19 | 0.89 | 7.19 | |
| preppi_filter | 5.92 | 0.64 | 4.81 | |
| print_bma_motif_es | 0.14 | 0.05 | 1.03 | |
| print_bma_motif_vs | 0.07 | 0.01 | 0.63 | |
| print_interactions | 3.00 | 0.14 | 4.92 | |
| print_path_es | 0.32 | 0.02 | 1.44 | |
| print_path_vs | 1.63 | 0.06 | 3.34 | |
| pubmed_open | 2.25 | 0.08 | 2.95 | |
| ramilowski_download | 0.26 | 0.11 | 1.00 | |
| regnetwork_directions | 0.24 | 0.01 | 0.30 | |
| regnetwork_download | 1.15 | 0.15 | 1.17 | |
| relations_list_to_table | 0.14 | 0.00 | 0.19 | |
| relations_table_to_graph | 0.16 | 0.00 | 0.15 | |
| relations_table_to_list | 0.11 | 0.00 | 0.19 | |
| remap_dorothea_download | 0.19 | 0.00 | 0.44 | |
| remap_filtered | 0 | 0 | 0 | |
| remap_tf_target_download | 0 | 0 | 0 | |
| resources_colname | 0.42 | 0.01 | 1.18 | |
| simplify_intercell_network | 43.89 | 0.31 | 45.93 | |
| swap_relations | 0.23 | 0.00 | 0.26 | |
| swissprots_only | 0.06 | 0.00 | 0.06 | |
| tfcensus_download | 0.22 | 0.02 | 0.27 | |
| translate_ids | 0.82 | 0.06 | 7.98 | |
| trembls_only | 0.04 | 0.00 | 0.05 | |
| trrust_download | 0.88 | 0.02 | 2.89 | |
| uniprot_full_id_mapping_table | 0.97 | 0.04 | 7.03 | |
| uniprot_genesymbol_cleanup | 0 | 0 | 0 | |
| uniprot_id_mapping_table | 0.22 | 0.02 | 2.96 | |
| uniprot_id_type | 0 | 0 | 0 | |
| unique_intercell_network | 42.12 | 0.08 | 42.20 | |
| uploadlists_id_type | 0 | 0 | 0 | |
| vinayagam_download | 0.75 | 0.06 | 2.34 | |
| walk_ontology_tree | 0.36 | 0.02 | 0.38 | |
| with_extra_attrs | 6.34 | 0.12 | 7.09 | |
| with_references | 0.43 | 0.05 | 1.44 | |
| zenodo_download | 0 | 0 | 0 | |