##############################################################################
##############################################################################
###
### Running command:
###
###   chmod a+r MIGSA -R && F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data MIGSA
###
##############################################################################
##############################################################################


* checking for file 'MIGSA/DESCRIPTION' ... OK
* preparing 'MIGSA':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'MIGSA.Rnw' using Sweave
Loading required package: BiocGenerics

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:stats':

    IQR, mad, sd, var, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, aperm, append,
    as.data.frame, basename, cbind, colnames, dirname, do.call,
    duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
    lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
    pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
    tapply, union, unique, unsplit, which.max, which.min

Loading required package: Biobase
Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

Loading required package: annotate
Loading required package: AnnotationDbi
Loading required package: stats4
Loading required package: IRanges
Loading required package: S4Vectors

Attaching package: 'S4Vectors'

The following objects are masked from 'package:base':

    I, expand.grid, unname


Attaching package: 'IRanges'

The following object is masked from 'package:grDevices':

    windows

Loading required package: XML
Loading required package: graph

Attaching package: 'graph'

The following object is masked from 'package:XML':

    addNode


Error: processing vignette 'MIGSA.Rnw' failed with diagnostics:
 chunk 4 (label = Speedup1) 
Error in library(mGSZ) : there is no package called 'mGSZ'

--- failed re-building 'MIGSA.Rnw'

--- re-building 'gettingPbcmcData.Rnw' using Sweave
texify: major issue: So far, you have not checked for updates as a MiKTeX user.
--- finished re-building 'gettingPbcmcData.Rnw'

--- re-building 'gettingTcgaData.Rnw' using Sweave
texify: major issue: So far, you have not checked for updates as a MiKTeX user.
--- finished re-building 'gettingTcgaData.Rnw'

SUMMARY: processing the following file failed:
  'MIGSA.Rnw'

Error: Vignette re-building failed.
Execution halted