Back to Build/check report for BioC 3.17 |
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This page was generated on 2023-01-02 09:00:34 -0500 (Mon, 02 Jan 2023).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
palomino5 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2022-12-25 r83502 ucrt) -- "Unsuffered Consequences" | 4165 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the INSPEcT package: Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 963/2158 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
INSPEcT 1.29.0 (landing page) Stefano de Pretis
| palomino5 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | ||||||||
Package: INSPEcT |
Version: 1.29.0 |
Command: F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:INSPEcT.install-out.txt --library=F:\biocbuild\bbs-3.17-bioc\R\library --no-vignettes --timings INSPEcT_1.29.0.tar.gz |
StartedAt: 2022-12-29 00:41:20 -0500 (Thu, 29 Dec 2022) |
EndedAt: 2022-12-29 00:47:21 -0500 (Thu, 29 Dec 2022) |
EllapsedTime: 361.0 seconds |
RetCode: 0 |
Status: OK |
CheckDir: INSPEcT.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:INSPEcT.install-out.txt --library=F:\biocbuild\bbs-3.17-bioc\R\library --no-vignettes --timings INSPEcT_1.29.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'F:/biocbuild/bbs-3.17-bioc-rtools43/meat/INSPEcT.Rcheck' * using R Under development (unstable) (2022-12-25 r83502 ucrt) * using platform: x86_64-w64-mingw32 (64-bit) * R was compiled by gcc.exe (GCC) 10.4.0 GNU Fortran (GCC) 10.4.0 * running under: Windows Server x64 (build 20348) * using session charset: UTF-8 * using option '--no-vignettes' * checking for file 'INSPEcT/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'INSPEcT' version '1.29.0' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'INSPEcT' can be installed ... OK * checking installed package size ... NOTE installed size is 7.1Mb sub-directories of 1Mb or more: R 1.8Mb data 2.8Mb * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE output_pars: no visible global function definition for 'plot.new' plotSingleRNADynamic: no visible global function definition for 'lines' Undefined global functions or variables: lines plot.new Consider adding importFrom("graphics", "lines", "plot.new") to your NAMESPACE file. * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in 'vignettes' ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed makeSimModel 21.28 0.18 21.45 quantifyExpressionsFromTrCounts 14.07 0.14 14.20 newINSPEcT 13.21 0.10 13.30 processingDelay 11.39 0.22 11.61 compareSteadyNoNascent 6.36 0.13 6.48 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 2 NOTEs See 'F:/biocbuild/bbs-3.17-bioc-rtools43/meat/INSPEcT.Rcheck/00check.log' for details.
INSPEcT.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL INSPEcT ### ############################################################################## ############################################################################## * installing to library 'F:/biocbuild/bbs-3.17-bioc/R/library' * installing *source* package 'INSPEcT' ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (INSPEcT)
INSPEcT.Rcheck/INSPEcT-Ex.timings
name | user | system | elapsed | |
AIC-INSPEcT-method | 0.16 | 0.00 | 0.21 | |
Extract | 0.31 | 0.00 | 0.31 | |
INSPEcT_diffsteady-class | 0 | 0 | 0 | |
calculateRatePvals | 0.19 | 0.01 | 0.20 | |
chisqmodel | 0.14 | 0.00 | 0.14 | |
chisqtest | 0.19 | 0.00 | 0.19 | |
combine | 0.29 | 0.00 | 0.30 | |
compareSteady | 0 | 0 | 0 | |
compareSteadyNoNascent | 6.36 | 0.13 | 6.48 | |
convergence | 0.16 | 0.00 | 0.16 | |
geneClass | 0.17 | 0.00 | 0.17 | |
inHeatmap | 0.17 | 0.00 | 0.17 | |
inspectFromPCR | 0.00 | 0.01 | 0.02 | |
labeledSF | 0.14 | 0.00 | 0.14 | |
logLik | 0.13 | 0.02 | 0.14 | |
makeModelRates | 0.19 | 0.00 | 0.19 | |
makeOscillatorySimModel | 4.95 | 0.01 | 4.98 | |
makeSimDataset | 0 | 0 | 0 | |
makeSimModel | 21.28 | 0.18 | 21.45 | |
modelRates | 0 | 0 | 0 | |
modelRatesNF | 0 | 0 | 0 | |
modelSelection | 0.14 | 0.01 | 0.16 | |
modelingParams | 0.16 | 0.00 | 0.16 | |
nGenes | 0.14 | 0.00 | 0.14 | |
nTpts | 0.12 | 0.01 | 0.14 | |
newINSPEcT | 13.21 | 0.10 | 13.30 | |
plotGene | 0.15 | 0.01 | 0.17 | |
plotMA | 0 | 0 | 0 | |
processingDelay | 11.39 | 0.22 | 11.61 | |
quantifyExpressionsFromBAMs | 0 | 0 | 0 | |
quantifyExpressionsFromTrCounts | 14.07 | 0.14 | 14.20 | |
ratePvals | 0.14 | 0.00 | 0.14 | |
ratesFirstGuess | 0.14 | 0.02 | 0.16 | |
ratesFirstGuessVar | 0.17 | 0.00 | 0.17 | |
removeModel | 0.22 | 0.00 | 0.22 | |
rocCurve | 0.01 | 0.00 | 0.02 | |
rocThresholds | 0 | 0 | 0 | |
split | 0.22 | 0.00 | 0.22 | |
tpts | 0.16 | 0.00 | 0.15 | |
viewConfidenceIntervals | 0.14 | 0.01 | 0.16 | |
viewModelRates | 0.14 | 0.00 | 0.14 | |