Back to Build/check report for BioC 3.17
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This page was generated on 2023-01-02 09:00:34 -0500 (Mon, 02 Jan 2023).

HostnameOSArch (*)R versionInstalled pkgs
palomino5Windows Server 2022 Datacenterx64R Under development (unstable) (2022-12-25 r83502 ucrt) -- "Unsuffered Consequences" 4165
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

CHECK results for IMPCdata on palomino5


To the developers/maintainers of the IMPCdata package:
Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 955/2158HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
IMPCdata 1.35.0  (landing page)
Jeremy Mason
Snapshot Date: 2022-12-28 11:00:06 -0500 (Wed, 28 Dec 2022)
git_url: https://git.bioconductor.org/packages/IMPCdata
git_branch: master
git_last_commit: f9bb80d
git_last_commit_date: 2022-11-01 11:10:38 -0500 (Tue, 01 Nov 2022)
palomino5Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  

Summary

Package: IMPCdata
Version: 1.35.0
Command: F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:IMPCdata.install-out.txt --library=F:\biocbuild\bbs-3.17-bioc\R\library --no-vignettes --timings IMPCdata_1.35.0.tar.gz
StartedAt: 2022-12-29 00:39:42 -0500 (Thu, 29 Dec 2022)
EndedAt: 2022-12-29 00:41:17 -0500 (Thu, 29 Dec 2022)
EllapsedTime: 95.1 seconds
RetCode: 0
Status:   OK  
CheckDir: IMPCdata.Rcheck
Warnings: 0

Command output

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###
### Running command:
###
###   F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:IMPCdata.install-out.txt --library=F:\biocbuild\bbs-3.17-bioc\R\library --no-vignettes --timings IMPCdata_1.35.0.tar.gz
###
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* using log directory 'F:/biocbuild/bbs-3.17-bioc-rtools43/meat/IMPCdata.Rcheck'
* using R Under development (unstable) (2022-12-25 r83502 ucrt)
* using platform: x86_64-w64-mingw32 (64-bit)
* R was compiled by
    gcc.exe (GCC) 10.4.0
    GNU Fortran (GCC) 10.4.0
* running under: Windows Server x64 (build 20348)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'IMPCdata/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'IMPCdata' version '1.35.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'IMPCdata' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                 user system elapsed
printProcedures     0   0.02    5.70
printPhenCenters    0   0.01    5.93
getPhenCenters      0   0.00   15.86
getProcedures       0   0.00    5.03
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

IMPCdata.Rcheck/00install.out

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###
### Running command:
###
###   F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL IMPCdata
###
##############################################################################
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* installing to library 'F:/biocbuild/bbs-3.17-bioc/R/library'
* installing *source* package 'IMPCdata' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (IMPCdata)

Tests output


Example timings

IMPCdata.Rcheck/IMPCdata-Ex.timings

nameusersystemelapsed
getAlleles0.000.032.75
getGenes0.020.032.99
getIMPCDataset0.160.001.76
getIMPCTable0.000.023.10
getName0.000.000.58
getParameters0.020.004.19
getPhenCenters 0.00 0.0015.86
getPipelines0.060.024.67
getProcedures0.000.005.03
getStrains0.000.012.81
getZygosities0.000.000.35
printAlleles0.030.022.25
printGenes0.020.002.36
printParameters0.000.003.11
printPhenCenters0.000.015.93
printPipelines0.000.004.46
printProcedures0.000.025.70
printStrains0.010.013.33