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This page was generated on 2023-01-02 09:00:33 -0500 (Mon, 02 Jan 2023).

HostnameOSArch (*)R versionInstalled pkgs
palomino5Windows Server 2022 Datacenterx64R Under development (unstable) (2022-12-25 r83502 ucrt) -- "Unsuffered Consequences" 4165
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

CHECK results for HilbertCurve on palomino5


To the developers/maintainers of the HilbertCurve package:
Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 897/2158HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
HilbertCurve 1.29.0  (landing page)
Zuguang Gu
Snapshot Date: 2022-12-28 11:00:06 -0500 (Wed, 28 Dec 2022)
git_url: https://git.bioconductor.org/packages/HilbertCurve
git_branch: master
git_last_commit: 86968d4
git_last_commit_date: 2022-11-01 11:11:58 -0500 (Tue, 01 Nov 2022)
palomino5Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  

Summary

Package: HilbertCurve
Version: 1.29.0
Command: F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:HilbertCurve.install-out.txt --library=F:\biocbuild\bbs-3.17-bioc\R\library --no-vignettes --timings HilbertCurve_1.29.0.tar.gz
StartedAt: 2022-12-29 00:30:40 -0500 (Thu, 29 Dec 2022)
EndedAt: 2022-12-29 00:32:32 -0500 (Thu, 29 Dec 2022)
EllapsedTime: 112.4 seconds
RetCode: 0
Status:   OK  
CheckDir: HilbertCurve.Rcheck
Warnings: 0

Command output

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### Running command:
###
###   F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:HilbertCurve.install-out.txt --library=F:\biocbuild\bbs-3.17-bioc\R\library --no-vignettes --timings HilbertCurve_1.29.0.tar.gz
###
##############################################################################
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* using log directory 'F:/biocbuild/bbs-3.17-bioc-rtools43/meat/HilbertCurve.Rcheck'
* using R Under development (unstable) (2022-12-25 r83502 ucrt)
* using platform: x86_64-w64-mingw32 (64-bit)
* R was compiled by
    gcc.exe (GCC) 10.4.0
    GNU Fortran (GCC) 10.4.0
* running under: Windows Server x64 (build 20348)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'HilbertCurve/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'HilbertCurve' version '1.29.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'HilbertCurve' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                                    user system elapsed
hc_layer-HilbertCurve-method        7.42   0.19    7.61
hc_layer-GenomicHilbertCurve-method 6.44   0.08    6.52
GenomicHilbertCurve                 4.94   0.14    5.49
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
  Running 'test-all.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

HilbertCurve.Rcheck/00install.out

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###
### Running command:
###
###   F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL HilbertCurve
###
##############################################################################
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* installing to library 'F:/biocbuild/bbs-3.17-bioc/R/library'
* installing *source* package 'HilbertCurve' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (HilbertCurve)

Tests output

HilbertCurve.Rcheck/tests/test-all.Rout


R Under development (unstable) (2022-12-25 r83502 ucrt) -- "Unsuffered Consequences"
Copyright (C) 2022 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> suppressWarnings(suppressPackageStartupMessages(library(HilbertCurve)))
> 
> test_check("HilbertCurve")
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 8 ]
> 
> proc.time()
   user  system elapsed 
   2.85    0.26    3.23 

Example timings

HilbertCurve.Rcheck/HilbertCurve-Ex.timings

nameusersystemelapsed
GenomicHilbertCurve-class000
GenomicHilbertCurve4.940.145.49
HilbertCurve-class000
HilbertCurve0.480.020.50
default_overlay000
hc_centered_text-HilbertCurve-method0.060.010.08
hc_layer-GenomicHilbertCurve-method6.440.086.52
hc_layer-HilbertCurve-method7.420.197.61
hc_layer-dispatch000
hc_level-HilbertCurve-method0.020.000.01
hc_map-GenomicHilbertCurve-method2.180.062.25
hc_normal_points-HilbertCurve-method000
hc_offset-HilbertCurve-method000
hc_png-HilbertCurve-method2.220.172.39
hc_points-GenomicHilbertCurve-method0.240.040.27
hc_points-HilbertCurve-method0.360.040.41
hc_points-dispatch000
hc_polygon-GenomicHilbertCurve-method0.290.000.29
hc_polygon-HilbertCurve-method0.070.000.06
hc_polygon-dispatch000
hc_rect-GenomicHilbertCurve-method0.20.00.2
hc_rect-HilbertCurve-method0.030.020.05
hc_rect-dispatch000
hc_segmented_points-HilbertCurve-method000
hc_segments-GenomicHilbertCurve-method0.330.020.34
hc_segments-HilbertCurve-method0.050.020.06
hc_segments-dispatch000
hc_text-GenomicHilbertCurve-method0.170.010.19
hc_text-HilbertCurve-method0.050.000.04
hc_text-dispatch000
is_white000
show-HilbertCurve-method000
unzoom-HilbertCurve-method000
zoom-HilbertCurve-method000