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This page was generated on 2023-01-02 09:00:33 -0500 (Mon, 02 Jan 2023).

HostnameOSArch (*)R versionInstalled pkgs
palomino5Windows Server 2022 Datacenterx64R Under development (unstable) (2022-12-25 r83502 ucrt) -- "Unsuffered Consequences" 4165
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD results for HPAStainR on palomino5


To the developers/maintainers of the HPAStainR package:
Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 911/2158HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
HPAStainR 1.9.0  (landing page)
Tim O. Nieuwenhuis
Snapshot Date: 2022-12-28 11:00:06 -0500 (Wed, 28 Dec 2022)
git_url: https://git.bioconductor.org/packages/HPAStainR
git_branch: master
git_last_commit: fcb4d63
git_last_commit_date: 2022-11-01 11:22:33 -0500 (Tue, 01 Nov 2022)
palomino5Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped

Summary

Package: HPAStainR
Version: 1.9.0
Command: chmod a+r HPAStainR -R && F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data HPAStainR
StartedAt: 2022-12-28 18:35:57 -0500 (Wed, 28 Dec 2022)
EndedAt: 2022-12-28 18:36:15 -0500 (Wed, 28 Dec 2022)
EllapsedTime: 17.9 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   chmod a+r HPAStainR -R && F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data HPAStainR
###
##############################################################################
##############################################################################


* checking for file 'HPAStainR/DESCRIPTION' ... OK
* preparing 'HPAStainR':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'HPAStainR.Rmd' using rmarkdown
trying URL 'https://www.proteinatlas.org/download/normal_tissue.tsv.zip'
Content type 'application/zip' length 5606031 bytes (5.3 MB)
==================================================
downloaded 5.3 MB

trying URL 'https://www.proteinatlas.org/download/pathology.tsv.zip'
Content type 'application/zip' length 3609172 bytes (3.4 MB)
==================================================
downloaded 3.4 MB

Quitting from lines 89-90 (HPAStainR.Rmd) 
Error: processing vignette 'HPAStainR.Rmd' failed with diagnostics:
object 'hpaNormalTissue' not found
--- failed re-building 'HPAStainR.Rmd'

SUMMARY: processing the following file failed:
  'HPAStainR.Rmd'

Error: Vignette re-building failed.
Execution halted