| Back to Build/check report for BioC 3.17 |
|
This page was generated on 2023-01-02 09:00:32 -0500 (Mon, 02 Jan 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| palomino5 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2022-12-25 r83502 ucrt) -- "Unsuffered Consequences" | 4165 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the GSVA package: Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 863/2158 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| GSVA 1.47.0 (landing page) Robert Castelo
| palomino5 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | ||||||||
| Package: GSVA |
| Version: 1.47.0 |
| Command: rm -rf GSVA.buildbin-libdir && mkdir GSVA.buildbin-libdir && F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL --build --library=GSVA.buildbin-libdir GSVA_1.47.0.tar.gz |
| StartedAt: 2022-12-29 05:14:39 -0500 (Thu, 29 Dec 2022) |
| EndedAt: 2022-12-29 05:15:13 -0500 (Thu, 29 Dec 2022) |
| EllapsedTime: 33.6 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: GSVA_1.47.0.zip |
| PackageFileSize: 1.499 MiB |
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### Running command:
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### rm -rf GSVA.buildbin-libdir && mkdir GSVA.buildbin-libdir && F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL --build --library=GSVA.buildbin-libdir GSVA_1.47.0.tar.gz
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* installing *source* package 'GSVA' ...
** using staged installation
** libs
using C compiler: 'gcc.exe (GCC) 12.2.0'
gcc -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c kernel_estimation.c -o kernel_estimation.o
gcc -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c ks_test.c -o ks_test.o
ks_test.c: In function 'ks_sample':
ks_test.c:24:16: warning: unused variable 'mx_value' [-Wunused-variable]
24 | double mx_value = 0.0;
| ^~~~~~~~
gcc -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c register_cmethods.c -o register_cmethods.o
gcc -shared -s -static-libgcc -o GSVA.dll tmp.def kernel_estimation.o ks_test.o register_cmethods.o -Lc:/rtools42/x86_64-w64-mingw32.static.posix/lib/x64 -Lc:/rtools42/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.17-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.17-bioc-rtools43/meat/GSVA.buildbin-libdir/00LOCK-GSVA/00new/GSVA/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'GSVA' as GSVA_1.47.0.zip
* DONE (GSVA)