Back to Build/check report for BioC 3.17 |
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This page was generated on 2023-01-02 09:00:30 -0500 (Mon, 02 Jan 2023).
Hostname | OS | Arch (*) | R version | Installed pkgs |
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palomino5 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2022-12-25 r83502 ucrt) -- "Unsuffered Consequences" | 4165 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the FunChIP package: Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 711/2158 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
FunChIP 1.25.0 (landing page) Alice Parodi
| palomino5 | Windows Server 2022 Datacenter / x64 | OK | OK | WARNINGS | OK | ||||||||
Package: FunChIP |
Version: 1.25.0 |
Command: F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL FunChIP |
StartedAt: 2022-12-28 16:27:50 -0500 (Wed, 28 Dec 2022) |
EndedAt: 2022-12-28 16:28:24 -0500 (Wed, 28 Dec 2022) |
EllapsedTime: 34.6 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL FunChIP ### ############################################################################## ############################################################################## * installing to library 'F:/biocbuild/bbs-3.17-bioc/R/library' * installing *source* package 'FunChIP' ... ** using staged installation ** libs using C++ compiler: 'G__~1.EXE (GCC) 12.2.0' using C++11 g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I../inst/include -I. -DNDEBUG -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c kmean_function.cpp -o kmean_function.o kmean_function.cpp: In function 'SEXPREC* kmean_function(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)': kmean_function.cpp:74:31: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 74 | for (unsigned int i =0 ; i<num_data; i++){ | ~^~~~~~~~~ kmean_function.cpp:80:34: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 80 | for (unsigned int t =0 ; t < num_points; t++) | ~~^~~~~~~~~~~~ kmean_function.cpp: In function 'SEXPREC* distance_matrix(SEXP, SEXP, SEXP, SEXP, SEXP)': kmean_function.cpp:210:35: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 210 | for (unsigned int i =0 ; i<num_data; i++){ | ~^~~~~~~~~ kmean_function.cpp:216:40: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 216 | for (unsigned int t =0 ; t < num_points; t++) | ~~^~~~~~~~~~~~ kmean_function.cpp: In function 'void kma_discrete(std::vector<peak>&, const int&, std::vector<int>&, const double&, const double&, const int&, const char&, const double&, const double&, std::vector<int>&, std::vector<double>&, std::vector<int>&, const double&, const double&, int, char, char)': kmean_function.cpp:638:51: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<peak>::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 638 | while( iter < iter_max and number_distances_low < dati.size() and cluster_vuoti==0){ //and number_clusters_different > 0 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ kmean_function.cpp:677:52: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses] 677 | if ( (unsigned int)number_clusters_different == dati.size() & iter != 1) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ kmean_function.cpp:681:31: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<peak>::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 681 | if (number_distances_low== dati.size()) | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ kmean_function.cpp: In function 'void normalize_data(std::vector<int>&, std::vector<int>&, const int&)': kmean_function.cpp:759:27: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'const int' [-Wsign-compare] 759 | for (unsigned int i=0; i<n_clust; i++) | ~^~~~~~~~ In file included from kmean_function.cpp:1: peak.h: In member function 'std::vector<double> peak::area(int, char) const': peak.h:154:46: warning: 'D' may be used uninitialized [-Wmaybe-uninitialized] 154 | area_def[0] = sqrt(area[0]/2)/D; | ~~~~~~~~~~~~~~~^~ peak.h:130:17: note: 'D' was declared here 130 | int D; | ^ g++ -shared -s -static-libgcc -o FunChIP.dll tmp.def kmean_function.o -Lc:/rtools42/x86_64-w64-mingw32.static.posix/lib/x64 -Lc:/rtools42/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.17-bioc/R/bin/x64 -lR installing to F:/biocbuild/bbs-3.17-bioc/R/library/00LOCK-FunChIP/00new/FunChIP/libs/x64 ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (FunChIP)