Back to Build/check report for BioC 3.17
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This page was generated on 2023-01-02 09:00:28 -0500 (Mon, 02 Jan 2023).

HostnameOSArch (*)R versionInstalled pkgs
palomino5Windows Server 2022 Datacenterx64R Under development (unstable) (2022-12-25 r83502 ucrt) -- "Unsuffered Consequences" 4165
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CHECK results for ExperimentHub on palomino5


To the developers/maintainers of the ExperimentHub package:
Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 637/2158HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ExperimentHub 2.7.0  (landing page)
Bioconductor Package Maintainer
Snapshot Date: 2022-12-28 11:00:06 -0500 (Wed, 28 Dec 2022)
git_url: https://git.bioconductor.org/packages/ExperimentHub
git_branch: master
git_last_commit: 161caf2
git_last_commit_date: 2022-11-01 11:13:01 -0500 (Tue, 01 Nov 2022)
palomino5Windows Server 2022 Datacenter / x64  OK    OK    WARNINGS    OK  

Summary

Package: ExperimentHub
Version: 2.7.0
Command: F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:ExperimentHub.install-out.txt --library=F:\biocbuild\bbs-3.17-bioc\R\library --no-vignettes --timings ExperimentHub_2.7.0.tar.gz
StartedAt: 2022-12-28 23:42:41 -0500 (Wed, 28 Dec 2022)
EndedAt: 2022-12-28 23:44:16 -0500 (Wed, 28 Dec 2022)
EllapsedTime: 94.5 seconds
RetCode: 0
Status:   WARNINGS  
CheckDir: ExperimentHub.Rcheck
Warnings: 1

Command output

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###
### Running command:
###
###   F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:ExperimentHub.install-out.txt --library=F:\biocbuild\bbs-3.17-bioc\R\library --no-vignettes --timings ExperimentHub_2.7.0.tar.gz
###
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* using log directory 'F:/biocbuild/bbs-3.17-bioc-rtools43/meat/ExperimentHub.Rcheck'
* using R Under development (unstable) (2022-12-25 r83502 ucrt)
* using platform: x86_64-w64-mingw32 (64-bit)
* R was compiled by
    gcc.exe (GCC) 10.4.0
    GNU Fortran (GCC) 10.4.0
* running under: Windows Server x64 (build 20348)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'ExperimentHub/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'ExperimentHub' version '2.7.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'ExperimentHub' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: 'curl'
  All declared Imports should be used.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
createHubAccessors : <anonymous>: no visible binding for global
  variable 'title'
Undefined global functions or variables:
  title
Consider adding
  importFrom("graphics", "title")
to your NAMESPACE file.
* checking Rd files ... WARNING
checkRd: (5) ExperimentHub-class.Rd:70-83: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:92-95: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:96-99: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:100-103: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:104-108: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:109-115: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:116-120: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:121-126: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:127-161: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:169-173: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:174-178: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:179-185: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:186-207: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:208-216: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:217-222: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:223-227: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:228-232: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:239-243: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:244-248: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:249-260: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:261-264: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:265-268: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:269-276: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:277-284: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:285-290: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:297-301: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:302-306: \item in \describe must have non-empty label
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 2 NOTEs
See
  'F:/biocbuild/bbs-3.17-bioc-rtools43/meat/ExperimentHub.Rcheck/00check.log'
for details.



Installation output

ExperimentHub.Rcheck/00install.out

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###
### Running command:
###
###   F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL ExperimentHub
###
##############################################################################
##############################################################################


* installing to library 'F:/biocbuild/bbs-3.17-bioc/R/library'
* installing *source* package 'ExperimentHub' ...
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ExperimentHub)

Tests output


Example timings

ExperimentHub.Rcheck/ExperimentHub-Ex.timings

nameusersystemelapsed
ExperimentHub-class1.460.171.70
getExperimentHubOption000
listResources0.020.000.01