Back to Build/check report for BioC 3.17
ABCD[E]FGHIJKLMNOPQRSTUVWXYZ

This page was generated on 2023-01-02 09:00:28 -0500 (Mon, 02 Jan 2023).

HostnameOSArch (*)R versionInstalled pkgs
palomino5Windows Server 2022 Datacenterx64R Under development (unstable) (2022-12-25 r83502 ucrt) -- "Unsuffered Consequences" 4165
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD results for EpiMix on palomino5


To the developers/maintainers of the EpiMix package:
Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 612/2158HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
EpiMix 1.1.0  (landing page)
Yuanning Zheng
Snapshot Date: 2022-12-28 11:00:06 -0500 (Wed, 28 Dec 2022)
git_url: https://git.bioconductor.org/packages/EpiMix
git_branch: master
git_last_commit: 182edea
git_last_commit_date: 2022-11-01 11:27:17 -0500 (Tue, 01 Nov 2022)
palomino5Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped

Summary

Package: EpiMix
Version: 1.1.0
Command: chmod a+r EpiMix -R && F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data EpiMix
StartedAt: 2022-12-28 17:50:55 -0500 (Wed, 28 Dec 2022)
EndedAt: 2022-12-28 17:55:59 -0500 (Wed, 28 Dec 2022)
EllapsedTime: 303.7 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   chmod a+r EpiMix -R && F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data EpiMix
###
##############################################################################
##############################################################################


* checking for file 'EpiMix/DESCRIPTION' ... OK
* preparing 'EpiMix':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'Methylation_Modeling.Rmd' using rmarkdown
trying URL 'https://egg2.wustl.edu/roadmap/data/byFileType/chromhmmSegmentations/ChmmModels/core_K27ac/jointModel/final/E096_18_core_K27ac_hg38lift_mnemonics.bed.gz'
Content type 'application/x-gzip' length 3835377 bytes (3.7 MB)
==================================================
downloaded 3.7 MB

Quitting from lines 314-316 (Methylation_Modeling.Rmd) 
Error: processing vignette 'Methylation_Modeling.Rmd' failed with diagnostics:
Failed to connect to gdac.broadinstitute.org port 80 after 2100 ms: Connection refused
--- failed re-building 'Methylation_Modeling.Rmd'

SUMMARY: processing the following file failed:
  'Methylation_Modeling.Rmd'

Error: Vignette re-building failed.
Execution halted