| Back to Build/check report for BioC 3.17 |
|
This page was generated on 2023-01-02 09:00:28 -0500 (Mon, 02 Jan 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| palomino5 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2022-12-25 r83502 ucrt) -- "Unsuffered Consequences" | 4165 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the EnrichmentBrowser package: Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 600/2158 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| EnrichmentBrowser 2.29.0 (landing page) Ludwig Geistlinger
| palomino5 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | ||||||||
| Package: EnrichmentBrowser |
| Version: 2.29.0 |
| Command: F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:EnrichmentBrowser.install-out.txt --library=F:\biocbuild\bbs-3.17-bioc\R\library --no-vignettes --timings EnrichmentBrowser_2.29.0.tar.gz |
| StartedAt: 2022-12-28 23:33:13 -0500 (Wed, 28 Dec 2022) |
| EndedAt: 2022-12-28 23:37:56 -0500 (Wed, 28 Dec 2022) |
| EllapsedTime: 283.7 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: EnrichmentBrowser.Rcheck |
| Warnings: 0 |
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###
### Running command:
###
### F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:EnrichmentBrowser.install-out.txt --library=F:\biocbuild\bbs-3.17-bioc\R\library --no-vignettes --timings EnrichmentBrowser_2.29.0.tar.gz
###
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* using log directory 'F:/biocbuild/bbs-3.17-bioc-rtools43/meat/EnrichmentBrowser.Rcheck'
* using R Under development (unstable) (2022-12-25 r83502 ucrt)
* using platform: x86_64-w64-mingw32 (64-bit)
* R was compiled by
gcc.exe (GCC) 10.4.0
GNU Fortran (GCC) 10.4.0
* running under: Windows Server x64 (build 20348)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'EnrichmentBrowser/DESCRIPTION' ... OK
* this is package 'EnrichmentBrowser' version '2.29.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'EnrichmentBrowser' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Unexported object imported by a ':::' call: 'pathview:::parseKGML2Graph2'
See the note in ?`:::` about the use of this operator.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
.getGOFromBiomart: no visible binding for global variable
'go_linkage_type'
Undefined global functions or variables:
go_linkage_type
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
ebrowser 68.22 10.49 78.71
getGenesets 10.47 0.51 16.20
eaBrowse 6.98 1.23 8.37
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
'F:/biocbuild/bbs-3.17-bioc-rtools43/meat/EnrichmentBrowser.Rcheck/00check.log'
for details.
EnrichmentBrowser.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL EnrichmentBrowser ### ############################################################################## ############################################################################## * installing to library 'F:/biocbuild/bbs-3.17-bioc/R/library' * installing *source* package 'EnrichmentBrowser' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (EnrichmentBrowser)
EnrichmentBrowser.Rcheck/EnrichmentBrowser-Ex.timings
| name | user | system | elapsed | |
| combResults | 0.41 | 0.01 | 0.42 | |
| compileGRN | 3.82 | 0.24 | 4.06 | |
| configEBrowser | 0 | 0 | 0 | |
| deAna | 3.75 | 0.39 | 4.15 | |
| downloadPathways | 0 | 0 | 0 | |
| eaBrowse | 6.98 | 1.23 | 8.37 | |
| ebrowser | 68.22 | 10.49 | 78.71 | |
| getGenesets | 10.47 | 0.51 | 16.20 | |
| ggeaGraph | 3.07 | 0.03 | 3.10 | |
| idMap | 0.84 | 0.27 | 1.11 | |
| import | 3.51 | 0.23 | 3.75 | |
| isAvailable | 0 | 0 | 0 | |
| makeExampleData | 0.05 | 0.00 | 0.04 | |
| nbea | 0.24 | 0.02 | 0.25 | |
| normalize | 0.46 | 0.14 | 0.61 | |
| plots | 1.07 | 0.25 | 1.32 | |
| probe2gene | 0.04 | 0.00 | 0.04 | |
| readSE | 0.04 | 0.00 | 0.03 | |
| sbea | 0.14 | 0.00 | 0.14 | |