This page was generated on 2023-01-02 09:00:27 -0500 (Mon, 02 Jan 2023).
Hostname | OS | Arch (*) | R version | Installed pkgs |
palomino5 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2022-12-25 r83502 ucrt) -- "Unsuffered Consequences"
| 4165 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
CHECK results for DTA on palomino5
To the developers/maintainers of the DTA package:
Make sure to use the following settings in order to reproduce any error or warning you see on this page.
|
raw results
| DTA 2.45.0 (landing page) Bjoern Schwalb
Snapshot Date: 2022-12-28 11:00:06 -0500 (Wed, 28 Dec 2022) |
git_url: https://git.bioconductor.org/packages/DTA |
git_branch: master |
git_last_commit: acea7f1 |
git_last_commit_date: 2022-11-01 11:06:15 -0500 (Tue, 01 Nov 2022) |
| palomino5 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | |
Summary
Command output
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### Running command:
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### F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:DTA.install-out.txt --library=F:\biocbuild\bbs-3.17-bioc\R\library --no-vignettes --timings DTA_2.45.0.tar.gz
###
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* using log directory 'F:/biocbuild/bbs-3.17-bioc-rtools43/meat/DTA.Rcheck'
* using R Under development (unstable) (2022-12-25 r83502 ucrt)
* using platform: x86_64-w64-mingw32 (64-bit)
* R was compiled by
gcc.exe (GCC) 10.4.0
GNU Fortran (GCC) 10.4.0
* running under: Windows Server x64 (build 20348)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'DTA/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'DTA' version '2.45.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'DTA' can be installed ... OK
* checking installed package size ... NOTE
installed size is 7.2Mb
sub-directories of 1Mb or more:
data 6.8Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
DTA.dynamic.estimate : ellipse.coordinates: no visible global function
definition for 'qchisq'
DTA.dynamic.estimate : plotsfkt: no visible global function definition
for 'par'
DTA.dynamic.estimate: no visible global function definition for
'quantile'
DTA.dynamic.estimate : plotsfkt: no visible global function definition
for 'points'
DTA.dynamic.estimate : plotsfkt: no visible global function definition
for 'sd'
DTA.dynamic.estimate : plotsfkt: no visible global function definition
for 'legend'
DTA.dynamic.generate: no visible global function definition for 'rf'
DTA.dynamic.generate: no visible global function definition for
'median'
DTA.dynamic.generate : <anonymous>: no visible global function
definition for 'rnorm'
DTA.dynamic.generate: no visible binding for global variable 'median'
DTA.dynamic.singlegenerate : plotsfkt: no visible global function
definition for 'par'
DTA.dynamic.singlegenerate : plotsfkt: no visible global function
definition for 'points'
DTA.dynamic.singlegenerate : plotsfkt: no visible global function
definition for 'abline'
DTA.dynamic.singlegenerate : plotsfkt: no visible global function
definition for 'legend'
DTA.generate: no visible global function definition for 'rf'
DTA.generate: no visible global function definition for 'rnorm'
DTA.map.it: no visible global function definition for 'aggregate'
DTA.map.it : <anonymous>: no visible global function definition for
'median'
DTA.plot.it: no visible global function definition for 'jpeg'
DTA.plot.it: no visible global function definition for 'png'
DTA.plot.it: no visible global function definition for 'bmp'
DTA.plot.it: no visible global function definition for 'tiff'
DTA.plot.it: no visible global function definition for 'postscript'
DTA.plot.it: no visible global function definition for 'pdf'
DTA.plot.it: no visible global function definition for 'dev.off'
DTA.plot.it: no visible global function definition for 'dev.new'
DTA.singleestimate: no visible global function definition for 'median'
DTA.singleestimate : lossfct: no visible global function definition for
'median'
DTA.singleestimate: no visible global function definition for
'optimize'
DTA.singleestimate: no visible global function definition for 'lm'
DTA.singleestimate: no visible global function definition for
'coefficients'
DTA.singleestimate: no visible global function definition for
'quantile'
DTA.singleestimate : plotsfkt: no visible global function definition
for 'par'
DTA.singleestimate : plotsfkt: no visible global function definition
for 'points'
DTA.singleestimate : plotsfkt: no visible global function definition
for 'abline'
DTA.singleestimate : plotsfkt: no visible global function definition
for 'median'
DTA.singleestimate: no visible binding for global variable 'median'
DTA.singleestimate : plotsfkt: no visible binding for global variable
'median'
DTA.singleestimate : plotsfkt: no visible global function definition
for 'hist'
DTA.singleestimate : plotsfkt: no visible global function definition
for 'text'
DTA.singleestimate: no visible global function definition for 'cor'
DTA.singleestimate : plotsfkt: no visible global function definition
for 'layout'
DTA.singleestimate : plotsfkt: no visible global function definition
for 'image'
DTA.singleestimate : plotsfkt: no visible global function definition
for 'colorRampPalette'
DTA.singleestimate : plotsfkt: no visible global function definition
for 'axis'
DTA.singleestimate : plotsfkt: no visible global function definition
for 'box'
DTA.singleestimate: no visible binding for global variable 'sd'
DTA.singleestimate: no visible global function definition for 'loess'
DTA.singleestimate : <anonymous>: no visible global function definition
for 'optimize'
DTA.singleestimate : plotsfkt: no visible global function definition
for 'persp'
DTA.singleestimate : plotsfkt: no visible global function definition
for 'polygon'
DTA.singleestimate : plotsfkt: no visible global function definition
for 'trans3d'
DTA.singleestimate : plotsfkt: no visible global function definition
for 'lines'
DTA.singleestimate : plotsfkt: no visible global function definition
for 'dgamma'
DTA.singleestimate : plotsfkt: no visible global function definition
for 'mtext'
DTA.singleestimate : plotsfkt: no visible global function definition
for 'legend'
DTA.singleestimate : <anonymous>: no visible global function definition
for 'rnorm'
DTA.singleestimate : <anonymous>: no visible global function definition
for 'quantile'
DTA.singleestimate : plotsfkt: no visible global function definition
for 'quantile'
DTA.singleestimate : plotsfkt: no visible global function definition
for 'coefficients'
DTA.singleestimate : plotsfkt: no visible global function definition
for 'density'
DTA.singlegenerate: no visible global function definition for 'median'
DTA.singlegenerate: no visible global function definition for 'rnorm'
gridfkt: no visible global function definition for 'abline'
gridfkt: no visible global function definition for 'text'
likelihood: no visible global function definition for 'dnorm'
likelihood: no visible global function definition for 'dgamma'
medctr: no visible binding for global variable 'median'
medctr: no visible global function definition for 'median'
mediancenter: no visible binding for global variable 'median'
mediancenter: no visible global function definition for 'median'
mtextfkt: no visible global function definition for 'mtext'
parfkt: no visible global function definition for 'par'
pcor: no visible global function definition for 'cor'
scor: no visible global function definition for 'cor'
tls: no visible global function definition for 'model.response'
tls: no visible global function definition for 'model.matrix'
tls: no visible binding for global variable 'contrasts'
toquantiles: no visible global function definition for 'quantile'
wtls.solve: no visible global function definition for 'lm'
wtls.solve: no visible global function definition for 'uniroot'
Undefined global functions or variables:
abline aggregate axis bmp box coefficients colorRampPalette contrasts
cor density dev.new dev.off dgamma dnorm hist image jpeg layout
legend lines lm loess median model.matrix model.response mtext
optimize par pdf persp png points polygon postscript qchisq quantile
rf rnorm sd text tiff trans3d uniroot
Consider adding
importFrom("grDevices", "bmp", "colorRampPalette", "dev.new",
"dev.off", "jpeg", "pdf", "png", "postscript", "tiff",
"trans3d")
importFrom("graphics", "abline", "axis", "box", "hist", "image",
"layout", "legend", "lines", "mtext", "par", "persp",
"points", "polygon", "text")
importFrom("stats", "aggregate", "coefficients", "contrasts", "cor",
"density", "dgamma", "dnorm", "lm", "loess", "median",
"model.matrix", "model.response", "optimize", "qchisq",
"quantile", "rf", "rnorm", "sd", "uniroot")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
DTA.dynamic.generate 47.45 2.15 49.61
DTA.estimate 36.56 0.58 37.16
DTA.generate 33.53 0.58 34.11
DTA.dynamic.estimate 22.90 0.68 23.58
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
'F:/biocbuild/bbs-3.17-bioc-rtools43/meat/DTA.Rcheck/00check.log'
for details.
Installation output
DTA.Rcheck/00install.out
Tests output
Example timings
DTA.Rcheck/DTA-Ex.timings