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This page was generated on 2023-01-02 09:00:23 -0500 (Mon, 02 Jan 2023).

HostnameOSArch (*)R versionInstalled pkgs
palomino5Windows Server 2022 Datacenterx64R Under development (unstable) (2022-12-25 r83502 ucrt) -- "Unsuffered Consequences" 4165
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CHECK results for ChIPseeker on palomino5


To the developers/maintainers of the ChIPseeker package:
Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 309/2158HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ChIPseeker 1.35.0  (landing page)
Guangchuang Yu
Snapshot Date: 2022-12-28 11:00:06 -0500 (Wed, 28 Dec 2022)
git_url: https://git.bioconductor.org/packages/ChIPseeker
git_branch: master
git_last_commit: d4ebccf
git_last_commit_date: 2022-11-01 11:09:40 -0500 (Tue, 01 Nov 2022)
palomino5Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  

Summary

Package: ChIPseeker
Version: 1.35.0
Command: F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:ChIPseeker.install-out.txt --library=F:\biocbuild\bbs-3.17-bioc\R\library --no-vignettes --timings ChIPseeker_1.35.0.tar.gz
StartedAt: 2022-12-28 22:26:03 -0500 (Wed, 28 Dec 2022)
EndedAt: 2022-12-28 22:40:32 -0500 (Wed, 28 Dec 2022)
EllapsedTime: 868.4 seconds
RetCode: 0
Status:   OK  
CheckDir: ChIPseeker.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:ChIPseeker.install-out.txt --library=F:\biocbuild\bbs-3.17-bioc\R\library --no-vignettes --timings ChIPseeker_1.35.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'F:/biocbuild/bbs-3.17-bioc-rtools43/meat/ChIPseeker.Rcheck'
* using R Under development (unstable) (2022-12-25 r83502 ucrt)
* using platform: x86_64-w64-mingw32 (64-bit)
* R was compiled by
    gcc.exe (GCC) 10.4.0
    GNU Fortran (GCC) 10.4.0
* running under: Windows Server x64 (build 20348)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'ChIPseeker/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'ChIPseeker' version '1.35.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'ChIPseeker' can be installed ... OK
* checking installed package size ... NOTE
  installed size is  6.0Mb
  sub-directories of 1Mb or more:
    data   4.5Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
annotatePeak: no visible global function definition for 'is'
annotatePeak: no visible global function definition for 'new'
as.GRanges: no visible global function definition for 'is'
combine_csAnno : <anonymous>: no visible global function definition for
  'is'
combine_csAnno: no visible global function definition for 'new'
covplot: no visible global function definition for 'is'
enrichAnnoOverlap: no visible global function definition for 'is'
enrichPeakOverlap: no visible global function definition for 'is'
getAnnoStat: no visible global function definition for 'is'
getChrCov: no visible global function definition for 'is'
getTagCount: no visible global function definition for 'missingArg'
getTagMatrix: no visible global function definition for 'is'
getTagMatrix: no visible global function definition for 'missingArg'
getTagMatrix.binning.internal: no visible global function definition
  for 'is'
getTagMatrix.binning.internal: no visible global function definition
  for 'as'
getTagMatrix.internal: no visible global function definition for 'is'
getTagMatrix.internal: no visible global function definition for 'as'
getTagMatrix2: no visible global function definition for 'missingArg'
loadPeak: no visible global function definition for 'is'
makeBioRegionFromGranges: no visible global function definition for
  'is'
peakHeatmap: no visible global function definition for 'is'
plotAvgProf: no visible global function definition for 'missingArg'
plotAvgProf.binning: no visible global function definition for
  'missingArg'
plotAvgProf.binning.internal: no visible global function definition for
  'is'
plotAvgProf.binning.internal: no visible global function definition for
  'missingArg'
plotAvgProf.internal: no visible global function definition for 'is'
plotAvgProf.internal: no visible global function definition for
  'missingArg'
plotMultiProf: no visible global function definition for 'is'
plotMultiProf: no visible global function definition for 'missingArg'
plotMultiProf.binning: no visible global function definition for
  'missingArg'
plotMultiProf.binning.internal: no visible global function definition
  for 'is'
plotMultiProf.binning.internal: no visible global function definition
  for 'missingArg'
plotMultiProf.normal: no visible global function definition for
  'missingArg'
plotMultiProf.normal.internal: no visible global function definition
  for 'missingArg'
plotPeakProf: no visible global function definition for 'missingArg'
plotPeakProf: no visible global function definition for 'is'
plotPeakProf2: no visible global function definition for 'missingArg'
plotPeakProf2: no visible global function definition for 'is'
plotPeakProf_MultiWindows: no visible global function definition for
  'missingArg'
plotPeakProf_MultiWindows: no visible global function definition for
  'is'
tagHeatmap: no visible global function definition for 'is'
Undefined global functions or variables:
  as is missingArg new
Consider adding
  importFrom("methods", "as", "is", "missingArg", "new")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
  Running 'testthat.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  'F:/biocbuild/bbs-3.17-bioc-rtools43/meat/ChIPseeker.Rcheck/00check.log'
for details.

Installation output

ChIPseeker.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL ChIPseeker
###
##############################################################################
##############################################################################


* installing to library 'F:/biocbuild/bbs-3.17-bioc/R/library'
* installing *source* package 'ChIPseeker' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ChIPseeker)

Tests output

ChIPseeker.Rcheck/tests/testthat.Rout


R Under development (unstable) (2022-12-25 r83502 ucrt) -- "Unsuffered Consequences"
Copyright (C) 2022 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(ChIPseeker)

ChIPseeker v1.35.0  For help: https://guangchuangyu.github.io/software/ChIPseeker

If you use ChIPseeker in published research, please cite:
Guangchuang Yu, Li-Gen Wang, Qing-Yu He. ChIPseeker: an R/Bioconductor package for ChIP peak annotation, comparison and visualization. Bioinformatics 2015, 31(14):2382-2383
> 
> test_check("ChIPseeker")
>> preparing start_site regions by gene... 2022-12-28 10:29:52 PM
>> preparing tag matrix...  2022-12-28 10:29:52 PM 
>> binning method is used...2022-12-28 10:30:00 PM
>> preparing body regions by enhancer... 2022-12-28 10:30:00 PM
>> preparing tag matrix by binning...  2022-12-28 10:30:00 PM 
>> preparing matrix for body region with no flank extension... 2022-12-28 10:30:00 PM
>> 0 peaks(0%), having lengths smaller than 800bp, are filtered... 2022-12-28 10:30:00 PM
>> binning method is used...2022-12-28 10:30:02 PM
>> preparing body regions by enhancer... 2022-12-28 10:30:02 PM
>> preparing tag matrix by binning...  2022-12-28 10:30:02 PM 
>> preparing matrix with extension from (enhancer_SS-20%)~(enhancer_TS+20%)... 2022-12-28 10:30:02 PM
>> 0 peaks(0%), having lengths smaller than 800bp, are filtered... 2022-12-28 10:30:02 PM
>> binning method is used...2022-12-28 10:30:06 PM
>> preparing body regions by enhancer... 2022-12-28 10:30:06 PM
>> preparing tag matrix by binning...  2022-12-28 10:30:06 PM 
>> preparing matrix with flank extension from (enhancer_SS-1000bp)~(enhancer_TS+1000bp)... 2022-12-28 10:30:06 PM
>> 0 peaks(0%), having lengths smaller than 800bp, are filtered... 2022-12-28 10:30:07 PM
>> preparing start_site regions by gene... 2022-12-28 10:30:09 PM
>> preparing tag matrix...  2022-12-28 10:30:09 PM 
>> preparing start_site regions by gene... 2022-12-28 10:30:21 PM
>> preparing tag matrix...  2022-12-28 10:30:21 PM 
>> binning method is used...2022-12-28 10:30:21 PM
>> preparing body regions by gene... 2022-12-28 10:30:21 PM
>> preparing tag matrix by binning...  2022-12-28 10:30:21 PM 
>> preparing matrix for body region with no flank extension... 2022-12-28 10:30:21 PM
>> 9 peaks(1.2%), having lengths smaller than 800bp, are filtered... 2022-12-28 10:30:23 PM
>> binning method is used...2022-12-28 10:30:46 PM
>> preparing body regions by enhancer... 2022-12-28 10:30:46 PM
>> preparing tag matrix by binning...  2022-12-28 10:30:46 PM 
>> preparing matrix with extension from (enhancer_SS-20%)~(enhancer_TS+20%)... 2022-12-28 10:30:46 PM
>> 0 peaks(0%), having lengths smaller than 800bp, are filtered... 2022-12-28 10:30:46 PM
>> binning method is used...2022-12-28 10:30:50 PM
>> preparing body regions by gene... 2022-12-28 10:30:50 PM
>> preparing tag matrix by binning...  2022-12-28 10:30:50 PM 
>> preparing matrix with flank extension from (TSS-1000bp)~(TTS+1000bp)... 2022-12-28 10:30:50 PM
>> 15 peaks(1.80072%), having lengths smaller than 800bp, are filtered... 2022-12-28 10:30:52 PM
>> preparing start_site regions by enhancer non-enhancer... 2022-12-28 10:31:20 PM
>> preparing tag matrix...  2022-12-28 10:31:20 PM 
>> plotting figure...			 2022-12-28 10:31:20 PM 
>> Running bootstrapping for tag matrix...		 2022-12-28 10:31:21 PM 
>> Running bootstrapping for tag matrix...		 2022-12-28 10:31:22 PM 
>> preparing start_site regions by enhancer non-enhancer... 2022-12-28 10:31:22 PM
>> preparing tag matrix...  2022-12-28 10:31:22 PM 
>> preparing start_site regions by enhancer non-enhancer... 2022-12-28 10:31:23 PM
>> preparing tag matrix...  2022-12-28 10:31:23 PM 
>> plotting figure...			 2022-12-28 10:31:24 PM 
>> Running bootstrapping for tag matrix...		 2022-12-28 10:31:25 PM 
>> Running bootstrapping for tag matrix...		 2022-12-28 10:31:26 PM 
>> Running bootstrapping for tag matrix...		 2022-12-28 10:31:27 PM 
>> Running bootstrapping for tag matrix...		 2022-12-28 10:31:28 PM 
>> preparing start_site regions by enhancer gene... 2022-12-28 10:31:28 PM
>> preparing tag matrix...  2022-12-28 10:31:28 PM 
>> plotting figure...			 2022-12-28 10:31:32 PM 
>> Running bootstrapping for tag matrix...		 2022-12-28 10:31:32 PM 
>> Running bootstrapping for tag matrix...		 2022-12-28 10:31:38 PM 
>> binning method is used...2022-12-28 10:31:38 PM
>> preparing body regions by enhancer gene... 2022-12-28 10:31:38 PM
>> preparing tag matrix by binning...  2022-12-28 10:31:38 PM 
>> preparing matrix with flank extension from (enhancer_SS-1000bp)~(enhancer_TS+1000bp)... 2022-12-28 10:31:38 PM
>> 0 peaks(0%), having lengths smaller than 800bp, are filtered... 2022-12-28 10:31:38 PM
>> preparing matrix with flank extension from (TSS-1000bp)~(TTS+1000bp)... 2022-12-28 10:31:40 PM
>> 15 peaks(1.80072%), having lengths smaller than 800bp, are filtered... 2022-12-28 10:31:42 PM
>> Running bootstrapping for tag matrix...		 2022-12-28 10:32:04 PM 
>> Running bootstrapping for tag matrix...		 2022-12-28 10:32:08 PM 
>> binning method is used...2022-12-28 10:32:08 PM
>> preparing body regions by enhancer gene... 2022-12-28 10:32:08 PM
>> preparing tag matrix by binning...  2022-12-28 10:32:08 PM 
>> preparing matrix for body region with no flank extension... 2022-12-28 10:32:08 PM
>> 0 peaks(0%), having lengths smaller than 800bp, are filtered... 2022-12-28 10:32:08 PM
>> preparing matrix for body region with no flank extension... 2022-12-28 10:32:10 PM
>> 9 peaks(1.2%), having lengths smaller than 800bp, are filtered... 2022-12-28 10:32:12 PM
>> Running bootstrapping for tag matrix...		 2022-12-28 10:32:33 PM 
>> Running bootstrapping for tag matrix...		 2022-12-28 10:32:36 PM 
>> binning method is used...2022-12-28 10:32:36 PM
>> preparing body regions by enhancer gene... 2022-12-28 10:32:36 PM
>> preparing tag matrix by binning...  2022-12-28 10:32:36 PM 
>> preparing matrix with extension from (enhancer_SS-20%)~(enhancer_TS+20%)... 2022-12-28 10:32:36 PM
>> 0 peaks(0%), having lengths smaller than 800bp, are filtered... 2022-12-28 10:32:36 PM
>> preparing matrix with extension from (TSS-20%)~(TTS+20%)... 2022-12-28 10:32:40 PM
>> 9 peaks(0.872093%), having lengths smaller than 800bp, are filtered... 2022-12-28 10:32:42 PM
>> Running bootstrapping for tag matrix...		 2022-12-28 10:33:30 PM 
>> Running bootstrapping for tag matrix...		 2022-12-28 10:33:35 PM 
>> binning method is used...2022-12-28 10:33:35 PM
>> preparing body regions by enhancer gene... 2022-12-28 10:33:35 PM
>> preparing tag matrix by binning...  2022-12-28 10:33:35 PM 
>> preparing matrix with extension from (enhancer_SS-20%)~(enhancer_TS+20%)... 2022-12-28 10:33:36 PM
>> 0 peaks(0%), having lengths smaller than 800bp, are filtered... 2022-12-28 10:33:36 PM
>> preparing matrix with extension from (TSS-20%)~(TTS+20%)... 2022-12-28 10:33:40 PM
>> 9 peaks(0.872093%), having lengths smaller than 800bp, are filtered... 2022-12-28 10:33:43 PM
>> binning method is used...2022-12-28 10:34:32 PM
>> preparing body regions by enhancer gene... 2022-12-28 10:34:32 PM
>> preparing tag matrix by binning...  2022-12-28 10:34:32 PM 
>> preparing matrix with extension from (enhancer_SS-20%)~(enhancer_TS+20%)... 2022-12-28 10:34:32 PM
>> 0 peaks(0%), having lengths smaller than 800bp, are filtered... 2022-12-28 10:34:32 PM
>> preparing matrix with extension from (TSS-20%)~(TTS+20%)... 2022-12-28 10:34:38 PM
>> 9 peaks(0.7874016%), having lengths smaller than 800bp, are filtered... 2022-12-28 10:34:42 PM
>> Running bootstrapping for tag matrix...		 2022-12-28 10:35:38 PM 
>> Running bootstrapping for tag matrix...		 2022-12-28 10:35:43 PM 
>> Running bootstrapping for tag matrix...		 2022-12-28 10:35:44 PM 
>> Running bootstrapping for tag matrix...		 2022-12-28 10:35:50 PM 
>> binning method is used...2022-12-28 10:35:51 PM
>> preparing start_site regions by gene... 2022-12-28 10:35:51 PM
>> preparing tag matrix by binning...  2022-12-28 10:35:51 PM 
>> binning method is used...2022-12-28 10:35:52 PM
>> preparing start_site regions by gene... 2022-12-28 10:35:52 PM
>> preparing tag matrix by binning...  2022-12-28 10:35:52 PM 
>> binning method is used...2022-12-28 10:35:54 PM
>> preparing start_site regions by gene... 2022-12-28 10:35:54 PM
>> preparing tag matrix by binning...  2022-12-28 10:35:54 PM 
>> binning method is used...2022-12-28 10:35:56 PM
>> preparing body regions by gene... 2022-12-28 10:35:56 PM
>> preparing tag matrix by binning...  2022-12-28 10:35:56 PM 
>> preparing matrix for body region with no flank extension... 2022-12-28 10:35:56 PM
>> 9 peaks(1.2%), having lengths smaller than 800bp, are filtered... 2022-12-28 10:35:58 PM
>> binning method is used...2022-12-28 10:36:26 PM
>> preparing body regions by gene... 2022-12-28 10:36:26 PM
>> preparing tag matrix by binning...  2022-12-28 10:36:26 PM 
>> preparing matrix for body region with no flank extension... 2022-12-28 10:36:26 PM
>> 8 peaks(0.9791922%), having lengths smaller than 800bp, are filtered... 2022-12-28 10:36:28 PM
>> binning method is used...2022-12-28 10:36:55 PM
>> preparing body regions by gene... 2022-12-28 10:36:55 PM
>> preparing tag matrix by binning...  2022-12-28 10:36:55 PM 
>> preparing matrix with extension from (TSS-20%)~(TTS+20%)... 2022-12-28 10:36:55 PM
>> 9 peaks(0.872093%), having lengths smaller than 800bp, are filtered... 2022-12-28 10:36:58 PM
>> binning method is used...2022-12-28 10:37:51 PM
>> preparing body regions by gene... 2022-12-28 10:37:51 PM
>> preparing tag matrix by binning...  2022-12-28 10:37:51 PM 
>> preparing matrix with extension from (TSS-20%)~(TTS+20%)... 2022-12-28 10:37:51 PM
>> 9 peaks(0.7874016%), having lengths smaller than 800bp, are filtered... 2022-12-28 10:37:53 PM
>> binning method is used...2022-12-28 10:38:54 PM
>> preparing body regions by gene... 2022-12-28 10:38:54 PM
>> preparing tag matrix by binning...  2022-12-28 10:38:54 PM 
>> preparing matrix with flank extension from (TSS-1000bp)~(TTS+1000bp)... 2022-12-28 10:38:54 PM
>> 15 peaks(1.80072%), having lengths smaller than 800bp, are filtered... 2022-12-28 10:38:56 PM
>> binning method is used...2022-12-28 10:39:23 PM
>> preparing body regions by gene... 2022-12-28 10:39:23 PM
>> preparing tag matrix by binning...  2022-12-28 10:39:23 PM 
>> preparing matrix with flank extension from (TSS-1000bp)~(TTS+1000bp)... 2022-12-28 10:39:23 PM
>> 16 peaks(1.758242%), having lengths smaller than 800bp, are filtered... 2022-12-28 10:39:27 PM
>> binning method is used...2022-12-28 10:39:57 PM
>> preparing start_site regions by gene... 2022-12-28 10:39:57 PM
>> preparing tag matrix by binning...  2022-12-28 10:39:57 PM 
>> binning method is used...2022-12-28 10:39:57 PM
>> preparing start_site regions by gene... 2022-12-28 10:39:57 PM
>> preparing tag matrix by binning...  2022-12-28 10:39:57 PM 
>> binning method is used...2022-12-28 10:39:58 PM
>> preparing start_site regions by gene... 2022-12-28 10:39:58 PM
>> preparing tag matrix by binning...  2022-12-28 10:39:58 PM 
>> binning method is used...2022-12-28 10:39:58 PM
>> preparing body regions by gene... 2022-12-28 10:39:58 PM
>> preparing tag matrix by binning...  2022-12-28 10:39:58 PM 
>> preparing matrix for body region with no flank extension... 2022-12-28 10:39:58 PM
>> 0 peaks(0%), having lengths smaller than 800bp, are filtered... 2022-12-28 10:39:58 PM
>> binning method is used...2022-12-28 10:40:00 PM
>> preparing body regions by gene... 2022-12-28 10:40:00 PM
>> preparing tag matrix by binning...  2022-12-28 10:40:00 PM 
>> preparing matrix for body region with no flank extension... 2022-12-28 10:40:00 PM
>> 0 peaks(0%), having lengths smaller than 800bp, are filtered... 2022-12-28 10:40:00 PM
>> binning method is used...2022-12-28 10:40:02 PM
>> preparing body regions by gene... 2022-12-28 10:40:02 PM
>> preparing tag matrix by binning...  2022-12-28 10:40:02 PM 
>> preparing matrix with extension from (TSS-20%)~(TTS+20%)... 2022-12-28 10:40:02 PM
>> 0 peaks(0%), having lengths smaller than 800bp, are filtered... 2022-12-28 10:40:03 PM
>> binning method is used...2022-12-28 10:40:07 PM
>> preparing body regions by gene... 2022-12-28 10:40:07 PM
>> preparing tag matrix by binning...  2022-12-28 10:40:07 PM 
>> preparing matrix with extension from (TSS-20%)~(TTS+20%)... 2022-12-28 10:40:07 PM
>> 0 peaks(0%), having lengths smaller than 800bp, are filtered... 2022-12-28 10:40:07 PM
>> binning method is used...2022-12-28 10:40:13 PM
>> preparing body regions by gene... 2022-12-28 10:40:13 PM
>> preparing tag matrix by binning...  2022-12-28 10:40:13 PM 
>> preparing matrix with flank extension from (TSS-1000bp)~(TTS+1000bp)... 2022-12-28 10:40:13 PM
>> 0 peaks(0%), having lengths smaller than 800bp, are filtered... 2022-12-28 10:40:13 PM
>> binning method is used...2022-12-28 10:40:15 PM
>> preparing body regions by gene... 2022-12-28 10:40:15 PM
>> preparing tag matrix by binning...  2022-12-28 10:40:15 PM 
>> preparing matrix with flank extension from (TSS-1000bp)~(TTS+1000bp)... 2022-12-28 10:40:15 PM
>> 0 peaks(0%), having lengths smaller than 800bp, are filtered... 2022-12-28 10:40:15 PM
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 45 ]
> 
> proc.time()
   user  system elapsed 
 626.76   13.00  640.90

Example timings

ChIPseeker.Rcheck/ChIPseeker-Ex.timings

nameusersystemelapsed
annotatePeak000
dotFun000
plotAnnoPie000
plotDistToTSS.data.frame000
readPeakFile0.190.020.20
seq2gene000
vennplot000