Back to Build/check report for BioC 3.17 |
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This page was generated on 2023-01-02 09:00:22 -0500 (Mon, 02 Jan 2023).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
palomino5 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2022-12-25 r83502 ucrt) -- "Unsuffered Consequences" | 4165 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the CAGEfightR package: Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 239/2158 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
CAGEfightR 1.19.0 (landing page) Malte Thodberg
| palomino5 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | ||||||||
Package: CAGEfightR |
Version: 1.19.0 |
Command: F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:CAGEfightR.install-out.txt --library=F:\biocbuild\bbs-3.17-bioc\R\library --no-vignettes --timings CAGEfightR_1.19.0.tar.gz |
StartedAt: 2022-12-28 22:11:30 -0500 (Wed, 28 Dec 2022) |
EndedAt: 2022-12-28 22:17:03 -0500 (Wed, 28 Dec 2022) |
EllapsedTime: 333.5 seconds |
RetCode: 0 |
Status: OK |
CheckDir: CAGEfightR.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:CAGEfightR.install-out.txt --library=F:\biocbuild\bbs-3.17-bioc\R\library --no-vignettes --timings CAGEfightR_1.19.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'F:/biocbuild/bbs-3.17-bioc-rtools43/meat/CAGEfightR.Rcheck' * using R Under development (unstable) (2022-12-25 r83502 ucrt) * using platform: x86_64-w64-mingw32 (64-bit) * R was compiled by gcc.exe (GCC) 10.4.0 GNU Fortran (GCC) 10.4.0 * running under: Windows Server x64 (build 20348) * using session charset: UTF-8 * using option '--no-vignettes' * checking for file 'CAGEfightR/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'CAGEfightR' version '1.19.0' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'CAGEfightR' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in 'vignettes' ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed findLinks 4.80 0.06 37.05 trackLinks 1.59 0.03 17.88 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
CAGEfightR.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL CAGEfightR ### ############################################################################## ############################################################################## * installing to library 'F:/biocbuild/bbs-3.17-bioc/R/library' * installing *source* package 'CAGEfightR' ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (CAGEfightR)
CAGEfightR.Rcheck/CAGEfightR-Ex.timings
name | user | system | elapsed | |
assignGeneID | 2.84 | 0.09 | 3.19 | |
assignMissingID | 0.83 | 0.02 | 0.84 | |
assignTxID | 0.62 | 0.06 | 0.68 | |
assignTxType | 0 | 0 | 0 | |
balanceBC | 0 | 0 | 0 | |
balanceD | 0 | 0 | 0 | |
bwCommonGenome | 0 | 0 | 0 | |
bwGenomeCompatibility | 0 | 0 | 0 | |
bwValid | 0.01 | 0.00 | 0.02 | |
calcBidirectionality | 0.33 | 0.03 | 0.35 | |
calcComposition | 1.14 | 0.06 | 1.21 | |
calcPooled | 0.11 | 0.02 | 0.13 | |
calcShape | 2.01 | 0.14 | 2.15 | |
calcSupport | 0.12 | 0.00 | 0.13 | |
calcTPM | 0.11 | 0.00 | 0.10 | |
calcTotalTags | 0.05 | 0.01 | 0.07 | |
checkCTSSs | 0 | 0 | 0 | |
checkPeaked | 0.05 | 0.00 | 0.04 | |
checkPooled | 0.04 | 0.02 | 0.07 | |
clusterBidirectionally | 0 | 0 | 0 | |
clusterUnidirectionally | 0.99 | 0.03 | 1.01 | |
combineClusters | 0.55 | 0.02 | 0.56 | |
convertBAM2BigWig | 0 | 0 | 0 | |
convertBED2BigWig | 0 | 0 | 0 | |
convertGRanges2GPos | 0.07 | 0.00 | 0.08 | |
exampleDesign | 0.00 | 0.01 | 0.02 | |
findLinks | 4.80 | 0.06 | 37.05 | |
findStretches | 0.28 | 0.02 | 0.30 | |
quantifyCTSSs | 0 | 0 | 0 | |
quantifyCTSSs2 | 0 | 0 | 0 | |
quantifyClusters | 0.37 | 0.02 | 0.39 | |
quantifyGenes | 1.02 | 0.01 | 1.03 | |
quickEnhancers | 0 | 0 | 0 | |
quickGenes | 0 | 0 | 0 | |
quickTSSs | 0 | 0 | 0 | |
shapeEntropy | 0 | 0 | 0 | |
shapeIQR | 0 | 0 | 0 | |
shapeMean | 0 | 0 | 0 | |
shapeMultimodality | 0 | 0 | 0 | |
subsetByBidirectionality | 0.33 | 0.01 | 0.35 | |
subsetByComposition | 0.93 | 0.11 | 1.04 | |
subsetBySupport | 0.07 | 0.00 | 0.07 | |
swapRanges | 0.14 | 0.02 | 0.15 | |
swapScores | 0.09 | 0.00 | 0.10 | |
trackBalance | 0 | 0 | 0 | |
trackCTSS | 2.56 | 0.08 | 2.64 | |
trackClusters | 1.80 | 0.04 | 1.84 | |
trackLinks | 1.59 | 0.03 | 17.88 | |
trimToPeak | 0.63 | 0.00 | 0.62 | |
trimToPercentiles | 1.50 | 0.04 | 1.53 | |
tuneTagClustering | 0 | 0 | 0 | |
utilsAggregateRows | 0.45 | 0.29 | 0.75 | |
utilsDeStrand | 0.12 | 0.00 | 0.12 | |
utilsScoreOverlaps | 0.08 | 0.00 | 0.08 | |
utilsSimplifyTxDb | 0 | 0 | 0 | |