Back to Build/check report for BioC 3.17 |
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This page was generated on 2023-01-02 09:00:21 -0500 (Mon, 02 Jan 2023).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
palomino5 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2022-12-25 r83502 ucrt) -- "Unsuffered Consequences" | 4165 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the BioQC package: Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 197/2158 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
BioQC 1.27.0 (landing page) Jitao David Zhang
| palomino5 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | ||||||||
Package: BioQC |
Version: 1.27.0 |
Command: rm -rf BioQC.buildbin-libdir && mkdir BioQC.buildbin-libdir && F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL --build --library=BioQC.buildbin-libdir BioQC_1.27.0.tar.gz |
StartedAt: 2022-12-29 04:53:39 -0500 (Thu, 29 Dec 2022) |
EndedAt: 2022-12-29 04:54:00 -0500 (Thu, 29 Dec 2022) |
EllapsedTime: 20.7 seconds |
RetCode: 0 |
Status: OK |
PackageFile: BioQC_1.27.0.zip |
PackageFileSize: 4.444 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf BioQC.buildbin-libdir && mkdir BioQC.buildbin-libdir && F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL --build --library=BioQC.buildbin-libdir BioQC_1.27.0.tar.gz ### ############################################################################## ############################################################################## * installing *source* package 'BioQC' ... ** using staged installation ** libs using C compiler: 'gcc.exe (GCC) 12.2.0' using C++ compiler: 'G__~1.EXE (GCC) 12.2.0' gcc -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG `F:/biocbuild/bbs-3.17-bioc/R/bin/Rscript -e 'Rcpp:::CxxFlags()'` -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c gini.c -o gini.o gcc -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG `F:/biocbuild/bbs-3.17-bioc/R/bin/Rscript -e 'Rcpp:::CxxFlags()'` -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c init.c -o init.o g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG `F:/biocbuild/bbs-3.17-bioc/R/bin/Rscript -e 'Rcpp:::CxxFlags()'` -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c read_gmt.cpp -o read_gmt.o gcc -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG `F:/biocbuild/bbs-3.17-bioc/R/bin/Rscript -e 'Rcpp:::CxxFlags()'` -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c stat_rank.c -o stat_rank.o gcc -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG `F:/biocbuild/bbs-3.17-bioc/R/bin/Rscript -e 'Rcpp:::CxxFlags()'` -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c wmw_test.c -o wmw_test.o wmw_test.c: In function 'wmw_test_list': wmw_test.c:118: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 118 | #pragma omp parallel for | wmw_test.c: In function 'wmw_test': wmw_test.c:168: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 168 | #pragma omp parallel for | wmw_test.c: In function 'signed_wmw_test_list': wmw_test.c:201: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 201 | #pragma omp parallel for | wmw_test.c: In function 'signed_wmw_test': wmw_test.c:270: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 270 | #pragma omp parallel for | g++ -std=gnu++11 -shared -s -static-libgcc -o BioQC.dll tmp.def gini.o init.o read_gmt.o stat_rank.o wmw_test.o -Lc:/rtools42/x86_64-w64-mingw32.static.posix/lib/x64 -Lc:/rtools42/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.17-bioc/R/bin/x64 -lR installing to F:/biocbuild/bbs-3.17-bioc-rtools43/meat/BioQC.buildbin-libdir/00LOCK-BioQC/00new/BioQC/libs/x64 ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * MD5 sums packaged installation of 'BioQC' as BioQC_1.27.0.zip * DONE (BioQC)