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This page was generated on 2023-01-02 09:00:21 -0500 (Mon, 02 Jan 2023).

HostnameOSArch (*)R versionInstalled pkgs
palomino5Windows Server 2022 Datacenterx64R Under development (unstable) (2022-12-25 r83502 ucrt) -- "Unsuffered Consequences" 4165
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD results for BSgenome on palomino5


To the developers/maintainers of the BSgenome package:
Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 224/2158HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
BSgenome 1.67.1  (landing page)
Hervé Pagès
Snapshot Date: 2022-12-28 11:00:06 -0500 (Wed, 28 Dec 2022)
git_url: https://git.bioconductor.org/packages/BSgenome
git_branch: master
git_last_commit: e997a8a
git_last_commit_date: 2022-11-03 05:14:53 -0500 (Thu, 03 Nov 2022)
palomino5Windows Server 2022 Datacenter / x64  OK    OK    WARNINGS    OK  

Summary

Package: BSgenome
Version: 1.67.1
Command: chmod a+r BSgenome -R && F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data BSgenome
StartedAt: 2022-12-28 17:02:14 -0500 (Wed, 28 Dec 2022)
EndedAt: 2022-12-28 17:04:10 -0500 (Wed, 28 Dec 2022)
EllapsedTime: 116.5 seconds
RetCode: 0
Status:   OK  
PackageFile: BSgenome_1.67.1.tar.gz
PackageFileSize: 5.64 MiB

Command output

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### Running command:
###
###   chmod a+r BSgenome -R && F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data BSgenome
###
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* checking for file 'BSgenome/DESCRIPTION' ... OK
* preparing 'BSgenome':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... OK
* checking for LF line-endings in source and make files and shell scripts
* checking for empty or unneeded directories
WARNING: directory 'BSgenome/inst/pkgtemplates/BSgenome_datapkg/inst/extdata' is empty
WARNING: directory 'BSgenome/inst/pkgtemplates/MaskedBSgenome_datapkg/inst/extdata' is empty
* building 'BSgenome_1.67.1.tar.gz'
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  'BSgenome/inst/extdata/GentlemanLab/BSgenome.Gmellonella.NCBI.ASM364042v2-tools/fasta_to_sorted_2bit.R'