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This page was generated on 2023-01-02 09:00:18 -0500 (Mon, 02 Jan 2023).

HostnameOSArch (*)R versionInstalled pkgs
palomino5Windows Server 2022 Datacenterx64R Under development (unstable) (2022-12-25 r83502 ucrt) -- "Unsuffered Consequences" 4165
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BUILD results for AnnotationHub on palomino5


To the developers/maintainers of the AnnotationHub package:
Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 58/2158HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
AnnotationHub 3.7.0  (landing page)
Bioconductor Package Maintainer
Snapshot Date: 2022-12-28 11:00:06 -0500 (Wed, 28 Dec 2022)
git_url: https://git.bioconductor.org/packages/AnnotationHub
git_branch: master
git_last_commit: 7fa9930
git_last_commit_date: 2022-11-01 11:08:05 -0500 (Tue, 01 Nov 2022)
palomino5Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped

Summary

Package: AnnotationHub
Version: 3.7.0
Command: chmod a+r AnnotationHub -R && F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data AnnotationHub
StartedAt: 2022-12-28 16:37:47 -0500 (Wed, 28 Dec 2022)
EndedAt: 2022-12-28 16:39:59 -0500 (Wed, 28 Dec 2022)
EllapsedTime: 132.1 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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###
### Running command:
###
###   chmod a+r AnnotationHub -R && F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data AnnotationHub
###
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* checking for file 'AnnotationHub/DESCRIPTION' ... OK
* preparing 'AnnotationHub':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'AnnotationHub-HOWTO.Rmd' using rmarkdown
--- finished re-building 'AnnotationHub-HOWTO.Rmd'

--- re-building 'AnnotationHub.Rmd' using rmarkdown
Quitting from lines 148-149 (AnnotationHub.Rmd) 
Error: processing vignette 'AnnotationHub.Rmd' failed with diagnostics:
failed to load resource
  name: AH15146
  title: dm1ToDm2.over.chain.gz
  reason: expected 11 elements in header, got 1, on line 1
--- failed re-building 'AnnotationHub.Rmd'

--- re-building 'TroubleshootingTheCache.Rmd' using rmarkdown
--- finished re-building 'TroubleshootingTheCache.Rmd'

SUMMARY: processing the following file failed:
  'AnnotationHub.Rmd'

Error: Vignette re-building failed.
Execution halted