Back to Build/check report for BioC 3.17 |
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This page was generated on 2023-01-02 09:00:18 -0500 (Mon, 02 Jan 2023).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
palomino5 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2022-12-25 r83502 ucrt) -- "Unsuffered Consequences" | 4165 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the AffiXcan package: Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 20/2158 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
AffiXcan 1.17.0 (landing page) Alessandro Lussana
| palomino5 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | ||||||||
Package: AffiXcan |
Version: 1.17.0 |
Command: F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:AffiXcan.install-out.txt --library=F:\biocbuild\bbs-3.17-bioc\R\library --no-vignettes --timings AffiXcan_1.17.0.tar.gz |
StartedAt: 2022-12-28 21:28:11 -0500 (Wed, 28 Dec 2022) |
EndedAt: 2022-12-28 21:32:00 -0500 (Wed, 28 Dec 2022) |
EllapsedTime: 229.2 seconds |
RetCode: 0 |
Status: OK |
CheckDir: AffiXcan.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:AffiXcan.install-out.txt --library=F:\biocbuild\bbs-3.17-bioc\R\library --no-vignettes --timings AffiXcan_1.17.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'F:/biocbuild/bbs-3.17-bioc-rtools43/meat/AffiXcan.Rcheck' * using R Under development (unstable) (2022-12-25 r83502 ucrt) * using platform: x86_64-w64-mingw32 (64-bit) * R was compiled by gcc.exe (GCC) 10.4.0 GNU Fortran (GCC) 10.4.0 * running under: Windows Server x64 (build 20348) * using session charset: UTF-8 * using option '--no-vignettes' * checking for file 'AffiXcan/DESCRIPTION' ... OK * this is package 'AffiXcan' version '1.17.0' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'AffiXcan' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE computeBs: no visible binding for global variable 'V1' computeRSquared: no visible binding for global variable 'exprMatrix' Undefined global functions or variables: V1 exprMatrix * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in 'vignettes' ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed AffiXcan-package 3.14 0.05 52.90 affiXcanImpute 2.22 0.09 52.94 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See 'F:/biocbuild/bbs-3.17-bioc-rtools43/meat/AffiXcan.Rcheck/00check.log' for details.
AffiXcan.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL AffiXcan ### ############################################################################## ############################################################################## * installing to library 'F:/biocbuild/bbs-3.17-bioc/R/library' * installing *source* package 'AffiXcan' ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (AffiXcan)
AffiXcan.Rcheck/AffiXcan-Ex.timings
name | user | system | elapsed | |
AffiXcan-package | 3.14 | 0.05 | 52.90 | |
affiXcanBs | 0 | 0 | 0 | |
affiXcanGReX | 0 | 0 | 0 | |
affiXcanImpute | 2.22 | 0.09 | 52.94 | |
affiXcanPca | 0.00 | 0.02 | 0.01 | |
affiXcanPcs | 0 | 0 | 0 | |
affiXcanTrain | 0 | 0 | 0 | |
assoc2list | 0 | 0 | 0 | |
computeBs | 0 | 0 | 0 | |
computeCorrelation | 0.02 | 0.00 | 0.02 | |
computeExpr | 0 | 0 | 0 | |
computePca | 0 | 0 | 0 | |
computePcs | 0 | 0 | 0 | |
computeRSquared | 0 | 0 | 0 | |
exprMatrix | 0.00 | 0.01 | 0.01 | |
overlookRegions | 0 | 0 | 0 | |
regionAssoc | 0.01 | 0.00 | 0.02 | |
subsetKFold | 0 | 0 | 0 | |
trainingCovariates | 0 | 0 | 0 | |