| Back to Build/check report for BioC 3.17 |
|
This page was generated on 2023-01-02 09:00:17 -0500 (Mon, 02 Jan 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| palomino5 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2022-12-25 r83502 ucrt) -- "Unsuffered Consequences" | 4165 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the ADaCGH2 package: Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 14/2158 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| ADaCGH2 2.39.0 (landing page) Ramon Diaz-Uriarte
| palomino5 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | ||||||||
| Package: ADaCGH2 |
| Version: 2.39.0 |
| Command: F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL ADaCGH2 |
| StartedAt: 2022-12-28 16:14:56 -0500 (Wed, 28 Dec 2022) |
| EndedAt: 2022-12-28 16:15:28 -0500 (Wed, 28 Dec 2022) |
| EllapsedTime: 32.1 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL ADaCGH2
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* installing to library 'F:/biocbuild/bbs-3.17-bioc/R/library'
* installing *source* package 'ADaCGH2' ...
** using staged installation
** libs
using C compiler: 'gcc.exe (GCC) 12.2.0'
gcc -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c init.c -o init.o
gcc -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c r_haarseg.c -o r_haarseg.o
r_haarseg.c: In function 'ad_HaarConv':
r_haarseg.c:65:12: warning: unused variable 'totalNorm' [-Wunused-variable]
65 | double totalNorm;
| ^~~~~~~~~
r_haarseg.c: In function 'ad_FindLocalPeaks':
r_haarseg.c:152:43: warning: "/*" within comment [-Wcomment]
152 | }/* for j */
|
r_haarseg.c:176:43: warning: "/*" within comment [-Wcomment]
176 | }/* for j */
|
r_haarseg.c:128:16: warning: unused variable 'j' [-Wunused-variable]
128 | int k,j;
| ^
r_haarseg.c: In function 'ad_HaarConv':
r_haarseg.c:97:27: warning: 'highNonNormed' may be used uninitialized [-Wmaybe-uninitialized]
97 | highNonNormed += signal[highEnd]*weight[highEnd] - signal[k-1]*weight[k-1];
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
r_haarseg.c:64:12: note: 'highNonNormed' was declared here
64 | double highNonNormed;
| ^~~~~~~~~~~~~
r_haarseg.c:96:26: warning: 'lowNonNormed' may be used uninitialized [-Wmaybe-uninitialized]
96 | lowNonNormed += signal[lowEnd]*weight[lowEnd] - signal[k-1]*weight[k-1];
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
r_haarseg.c:63:12: note: 'lowNonNormed' was declared here
63 | double lowNonNormed;
| ^~~~~~~~~~~~
r_haarseg.c:98:26: warning: 'lowWeightSum' may be used uninitialized [-Wmaybe-uninitialized]
98 | lowWeightSum += weight[k-1] - weight[lowEnd];
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
r_haarseg.c:59:12: note: 'lowWeightSum' was declared here
59 | double lowWeightSum;
| ^~~~~~~~~~~~
gcc -shared -s -static-libgcc -o ADaCGH2.dll tmp.def init.o r_haarseg.o -Lc:/rtools42/x86_64-w64-mingw32.static.posix/lib/x64 -Lc:/rtools42/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.17-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.17-bioc/R/library/00LOCK-ADaCGH2/00new/ADaCGH2/libs/x64
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ADaCGH2)