| Back to Mac ARM64 build report for BioC 3.17 |
|
This page was generated on 2023-10-20 09:38:15 -0400 (Fri, 20 Oct 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| kjohnson2 | macOS 12.6.1 Monterey | arm64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4347 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2199/2230 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| vsclust 1.2.0 (landing page) Veit Schwaemmle
| kjohnson2 | macOS 12.6.1 Monterey / arm64 | ERROR | OK | ERROR | OK | ||||||||
|
To the developers/maintainers of the vsclust package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: vsclust |
| Version: 1.2.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:vsclust.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings vsclust_1.2.0.tar.gz |
| StartedAt: 2023-10-19 09:49:40 -0400 (Thu, 19 Oct 2023) |
| EndedAt: 2023-10-19 09:49:47 -0400 (Thu, 19 Oct 2023) |
| EllapsedTime: 6.6 seconds |
| RetCode: 1 |
| Status: ERROR |
| CheckDir: vsclust.Rcheck |
| Warnings: NA |
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### Running command:
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### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:vsclust.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings vsclust_1.2.0.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-3.17-bioc-mac-arm64/meat/vsclust.Rcheck’
* using R version 4.3.1 (2023-06-16)
* using platform: aarch64-apple-darwin20 (64-bit)
* R was compiled by
Apple clang version 14.0.0 (clang-1400.0.29.202)
GNU Fortran (GCC) 12.2.0
* running under: macOS Monterey 12.6.7
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘vsclust/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘vsclust’ version ‘1.2.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘vsclust’ can be installed ... ERROR
Installation failed.
See ‘/Users/biocbuild/bbs-3.17-bioc-mac-arm64/meat/vsclust.Rcheck/00install.out’ for details.
* DONE
Status: 1 ERROR
See
‘/Users/biocbuild/bbs-3.17-bioc-mac-arm64/meat/vsclust.Rcheck/00check.log’
for details.
vsclust.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL vsclust ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library’ * installing *source* package ‘vsclust’ ... ** using staged installation ** libs using C++ compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’ using SDK: ‘MacOSX11.3.sdk’ make: Nothing to be done for `all'. installing to /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/00LOCK-vsclust/00new/vsclust/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location Error: package or namespace load failed for ‘vsclust’ in dyn.load(file, DLLpath = DLLpath, ...): unable to load shared object '/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/00LOCK-vsclust/00new/vsclust/libs/vsclust.so': dlopen(/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/00LOCK-vsclust/00new/vsclust/libs/vsclust.so, 0x0006): tried: '/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/00LOCK-vsclust/00new/vsclust/libs/vsclust.so' (not a mach-o file) Error: loading failed Execution halted ERROR: loading failed * removing ‘/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/vsclust’