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This page was generated on 2023-10-20 09:38:03 -0400 (Fri, 20 Oct 2023).

HostnameOSArch (*)R versionInstalled pkgs
kjohnson2macOS 12.6.1 Montereyarm644.3.1 (2023-06-16) -- "Beagle Scouts" 4347
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 830/2230HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
geva 1.8.0  (landing page)
Itamar José Guimarães Nunes
Snapshot Date: 2023-10-15 14:00:07 -0400 (Sun, 15 Oct 2023)
git_url: https://git.bioconductor.org/packages/geva
git_branch: RELEASE_3_17
git_last_commit: 68ba8c2
git_last_commit_date: 2023-04-25 11:27:37 -0400 (Tue, 25 Apr 2023)
kjohnson2macOS 12.6.1 Monterey / arm64  OK    ERROR  skippedskipped

BUILD results for geva on kjohnson2


To the developers/maintainers of the geva package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: geva
Version: 1.8.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data geva
StartedAt: 2023-10-16 04:23:41 -0400 (Mon, 16 Oct 2023)
EndedAt: 2023-10-16 04:26:14 -0400 (Mon, 16 Oct 2023)
EllapsedTime: 153.5 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data geva
###
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* checking for file ‘geva/DESCRIPTION’ ... OK
* preparing ‘geva’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘geva.Rmd’ using rmarkdown
Warning in Sys.setlocale("LC_TIME", "English_United States") :
  OS reports request to set locale to "English_United States" cannot be honored
sh: /Library/TeX/texbin/biber: Bad CPU type in executable
Warning: LaTeX Warning: Citation 'smyth2005limma' on page 2 undefined on input line 165.
Warning: LaTeX Warning: Citation 'love2014moderated' on page 2 undefined on input line 1
Warning: 66.
Warning: LaTeX Warning: Citation 'nunes2018gene' on page 2 undefined on input line 169.
Warning: LaTeX Warning: Citation 'kallio2011chipster' on page 2 undefined on input line 
Warning: 170.
Warning: Package longtable Warning: Column widths have changed
Warning: (longtable)                in table 1 on input line 903.
Warning: Package longtable Warning: Column widths have changed
Warning: (longtable)                in table 2 on input line 942.
Warning: LaTeX Warning: Empty bibliography on input line 993.
Warning: Package longtable Warning: Table widths have changed. Rerun LaTeX.
Warning: LaTeX Warning: There were undefined references.
Warning: LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right.
Warning: Package biblatex Warning: Please (re)run Biber on the file:
Warning: (biblatex)                geva
Warning: (biblatex)                and rerun LaTeX afterwards.
Error: processing vignette 'geva.Rmd' failed with diagnostics:
Failed to build the bibliography via biber
--- failed re-building ‘geva.Rmd’

SUMMARY: processing the following file failed:
  ‘geva.Rmd’

Error: Vignette re-building failed.
Execution halted