| Back to Mac ARM64 build report for BioC 3.17 |
|
This page was generated on 2023-10-20 09:38:12 -0400 (Fri, 20 Oct 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| kjohnson2 | macOS 12.6.1 Monterey | arm64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4347 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1876/2230 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SELEX 1.32.0 (landing page) Harmen J. Bussemaker
| kjohnson2 | macOS 12.6.1 Monterey / arm64 | OK | OK | OK | OK | ||||||||
|
To the developers/maintainers of the SELEX package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: SELEX |
| Version: 1.32.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:SELEX.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings SELEX_1.32.0.tar.gz |
| StartedAt: 2023-10-18 23:56:15 -0400 (Wed, 18 Oct 2023) |
| EndedAt: 2023-10-19 00:00:01 -0400 (Thu, 19 Oct 2023) |
| EllapsedTime: 225.7 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: SELEX.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:SELEX.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings SELEX_1.32.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/Users/biocbuild/bbs-3.17-bioc-mac-arm64/meat/SELEX.Rcheck’
* using R version 4.3.1 (2023-06-16)
* using platform: aarch64-apple-darwin20 (64-bit)
* R was compiled by
Apple clang version 14.0.0 (clang-1400.0.29.202)
GNU Fortran (GCC) 12.2.0
* running under: macOS Monterey 12.6.7
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘SELEX/DESCRIPTION’ ... OK
* this is package ‘SELEX’ version ‘1.32.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘SELEX’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking startup messages can be suppressed ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in Makefiles ... OK
* checking for GNU extensions in Makefiles ... OK
* checking include directives in Makefiles ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
SELEX 16.331 1.615 15.087
selex.seqfilter 5.729 0.384 5.255
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
SELEX.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL SELEX ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library’ * installing *source* package ‘SELEX’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SELEX)
SELEX.Rcheck/SELEX-Ex.timings
| name | user | system | elapsed | |
| SELEX | 16.331 | 1.615 | 15.087 | |
| selex.affinities | 0.732 | 0.042 | 0.783 | |
| selex.config | 0.126 | 0.006 | 0.107 | |
| selex.countSummary | 1.028 | 0.044 | 0.804 | |
| selex.counts | 1.498 | 0.051 | 1.307 | |
| selex.defineSample | 0.126 | 0.010 | 0.100 | |
| selex.exampledata | 0.132 | 0.011 | 0.101 | |
| selex.fastqPSFM | 0.561 | 0.022 | 0.614 | |
| selex.getAttributes | 0.112 | 0.010 | 0.132 | |
| selex.getRound0 | 0.233 | 0.013 | 0.258 | |
| selex.getSeqfilter | 0.057 | 0.003 | 0.068 | |
| selex.infogain | 1.275 | 0.068 | 1.094 | |
| selex.infogainSummary | 0.699 | 0.033 | 0.585 | |
| selex.jvmStatus | 0.095 | 0.004 | 0.081 | |
| selex.kmax | 1.044 | 0.239 | 1.621 | |
| selex.kmerPSFM | 0.403 | 0.051 | 0.433 | |
| selex.loadAnnotation | 0.279 | 0.015 | 0.222 | |
| selex.mm | 0.559 | 0.030 | 0.513 | |
| selex.mmProb | 0.527 | 0.028 | 0.418 | |
| selex.mmSummary | 0.528 | 0.029 | 0.491 | |
| selex.revcomp | 0.988 | 0.055 | 0.879 | |
| selex.run | 1.425 | 0.061 | 1.130 | |
| selex.sample | 0.215 | 0.010 | 0.172 | |
| selex.samplePSFM | 0.420 | 0.020 | 0.343 | |
| selex.sampleSummary | 0.151 | 0.012 | 0.161 | |
| selex.saveAnnotation | 0.045 | 0.009 | 0.089 | |
| selex.seqfilter | 5.729 | 0.384 | 5.255 | |
| selex.setwd | 0.106 | 0.004 | 0.066 | |
| selex.split | 0.494 | 0.022 | 0.399 | |
| selex.summary | 0.784 | 0.060 | 1.060 | |